PFRMAT AL 
TARGET T0046 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/14/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0046" has a significant match 
REMARK pdb1sri_A     5.429     0.269     9.103  STREPTAVIDIN COMPLEXED WITH 3',5'-DIMETHYL-HABA 
REMARK                                          SCOP: Beta; Streptavidin-like 
REMARK pdb1plc       4.573     0.236     9.453  PLASTOCYANIN (CU2+, PH 6.0) 
REMARK                                          SCOP: Beta; Cupredoxins 
REMARK pdb2trx_A     3.807     0.207     7.086  THIOREDOXIN 
REMARK                                          SCOP: A/B; Thioredoxin-like 
REMARK pdb1rsy       3.706     0.203    15.094  SYNAPTOTAGMIN I (FIRST C2 DOMAIN) (CALB) 
REMARK                                          SCOP: Beta; Immunoglobulin-like beta-sandwich 
REMARK pdb1anu       3.670     0.202     0.398  MOLECULE: COHESIN-2; 
REMARK                                          SCOP: Beta; Common fold of diphtheria toxin/transcription factors/cytochrome f 
REMARK pdb2fx2       3.665     0.202    10.318  FLAVODOXIN 
REMARK                                          SCOP: A/B; Flavodoxin-like 
REMARK pdb1ctf       3.611     0.199    16.816  L7(SLASH)*L12 50 S RIBOSOMAL PROTEIN (C-TERMINAL DOMAIN) 
REMARK                                          SCOP: A+B; Ribosomal protein L7/12, C-terminal fragment 
REMARK pdb1erw       3.583     0.198     9.086  MOLECULE: THIOREDOXIN; 
REMARK                                          SCOP: A/B; Thioredoxin-like 
REMARK pdb1amm       3.557     0.197    11.457  MOLECULE: GAMMA B-CRYSTALLIN; 
REMARK                                          SCOP: 1-85: Beta; Crystallins/protein S 
REMARK                                          SCOP: 86-174: Beta; Crystallins/protein S 
REMARK pdb1doi       3.519     0.196    12.625  MOLECULE: 2FE-2S FERREDOXIN; 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0046        ....IPSITAYSKNGLKIEFTFERS.NTNPSVTVITIQASNSTELDMTDF 
REMARK                  ||.:| .||.|.||.|.|::. ..   ||| : :|: |..|  . | 
REMARK pdb1sri_A    AEAGITGTW.YNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGR.Y 
REMARK  
REMARK t0046        VFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQKQQLRMRIKL 
REMARK              | .   | .| | || ...  :  .|  .|:||.#| .::: .|... #: 
REMARK pdb1sri_A    DSAPASGTALGWTVAWKNNYRN..AHS.ATTWSGQYVGGAEARINTQWLL 
REMARK  
REMARK t0046        TYNHKGSAMQDLAEVNNFPPQSWQ.. 
REMARK              .. .  . .:|. ..|   .|.|:   
REMARK pdb1sri_A    TSGTTEANAWKSTLVG...HDTFTKV 
REMARK  
PARENT 1sri_A 
I 1  I 17 
P 2  T 18 
S 3  G 19 
I 4  T 20 
T 5  W 21 
Y 7  Y 22 
S 8  N 23 
K 9  Q 24 
N 10  L 25 
G 11  G 26 
L 12  S 27 
K 13  T 28 
I 14  F 29 
E 15  I 30 
F 16  V 31 
T 17  T 32 
F 18  A 33 
E 19  G 34 
R 20  A 35 
S 21  D 36 
N 22  A 38 
T 23  L 39 
N 24  T 40 
P 25  G 41 
S 26  T 42 
V 27  Y 43 
T 28  E 44 
V 29  S 45 
I 30  A 46 
T 31  V 47 
I 32  G 48 
Q 33  N 49 
A 34  A 50 
S 35  E 51 
N 36  S 52 
S 37  R 53 
T 38  Y 54 
E 39  V 55 
L 40  L 56 
D 41  T 57 
M 42  G 58 
T 43  R 59 
F 45  Y 60 
V 46  D 61 
F 47  S 62 
Q 48  A 63 
A 49  P 64 
A 50  A 65 
V 51  S 69 
P 52  G 70 
K 53  T 71 
T 54  A 72 
F 55  L 73 
Q 56  G 74 
L 57  W 75 
Q 58  T 76 
L 59  V 77 
L 60  A 78 
S 61  W 79 
P 62  K 80 
S 63  N 81 
S 64  N 82 
S 65  Y 83 
V 66  R 84 
V 67  N 85 
F 70  A 86 
N 71  H 87 
T 72  S 88 
T 74  A 89 
I 75  T 90 
T 76  T 91 
Q 77  W 92 
V 78  S 93 
I 79  G 94 
K 80  Q 95 
V 81  Y 96 
L 82  V 97 
N 83  G 98 
P 84  G 99 
Q 85  A 100 
K 86  E 101 
Q 87  A 102 
Q 88  R 103 
L 89  I 104 
R 90  N 105 
M 91  T 106 
R 92  Q 107 
I 93  W 108 
K 94  L 109 
L 95  L 110 
T 96  T 111 
Y 97  S 112 
N 98  G 113 
H 99  T 114 
K 100  T 115 
G 101  E 116 
S 102  A 117 
A 103  N 118 
M 104  A 119 
Q 105  W 120 
D 106  K 121 
L 107  S 122 
A 108  T 123 
E 109  L 124 
V 110  V 125 
N 111  G 126 
P 115  H 127 
Q 116  D 128 
S 117  T 129 
W 118  F 130 
Q 119  T 131 
TER 
END 
