PFRMAT AL 
TARGET t0046 
AUTHOR 4139-4764-1095 
METHOD 1) Several methods (threader, ssHMM, secondary structure predictions) 
METHOD indicated that t0046 was an IG or fibronectn fold 
METHOD 2) HMMs where constructed for these folds and the fibronectin 
METHOD fold consistently scored higher 
METHOD 3) We choosed 1cfb as the best representative and performed a  
METHOD smith-waterman alignment. It seemed good enough ! 
MODEL 1 
PARENT 1cfb 
I   1	A 617 
P   2	P 618 
S   3	K 619 
I   4	L 620 
T   5	T 621 
A   6	G 622 
Y   7	I 623 
S   8	T 624 
K   9	C 625 
N  10	Q 626 
G  11	A 627 
L  12	D 628 
K  13	K 629 
I  14	A 630 
E  15	E 631 
F  16	I 632 
T  17	H 633 
F  18	W 634 
E  19	E 635 
R  20	Q 636 
S  21	Q 637 
N  22	G 638 
T  23	D 639 
N  24	N 640 
P  25	R 641 
S  26	S 642 
V  27	I 644 
T  28	L 645 
V  29	H 646 
I  30	Y 647 
T  31	T 648 
I  32	I 649 
Q  33	Q 650 
A  34	F 651 
S  35	N 652 
N  36	T 653 
S  37	S 654 
T  38	F 655 
E  39	T 656 
L  40	P 657 
D  41	A 658 
M  42	S 659 
T  43	W 660 
D  44	D 661 
F  45	A 662 
V  46	A 663 
F  47	Y 664 
Q  48	E 665 
A  49	K 666 
V  51	V 667 
P  52	P 668 
K  53	N 669 
T  54	T 670 
F  55	F 674 
Q  56	V 675 
L  57	V 676 
Q  58	Q 677 
L  59	M 678 
S  61	S 679 
P  62	P 680 
S  63	W 681 
S  64	A 682 
S  65	N 683 
V  66	Y 684 
V  67	V 688 
P  68	I 689 
A  69	A 690 
F  70	F 691 
N  71	N 692 
T  72	K 693 
G  73	I 694 
T  74	G 695 
I  75	A 696 
T  76	S 697 
Q  77	P 698 
V  78	P 699 
I  79	S 700 
K  80	A 701 
V  81	H 702 
L  82	S 703 
N  83	D 704 
P  84	S 705 
Q  85	C 706 
K  86	T 707 
Q  87	T 708 
Q  88	Q 709 
L  89	P 710 
R  90	D 711 
M  91	V 712 
R  92	P 713 
I  93	F 714 
K  94	K 715 
L  95	N 716 
T  96	P 717 
Y  97	D 718 
N  98	N 719 
H  99	V 720 
K 100	V 721 
G 101	G 722 
S 102	Q 723 
A 103	G 724 
M 104	T 725 
Q 105	E 726 
D 106	P 727 
TER 
END 
