PFRMAT AL 
TARGET T0044 
AUTHOR 7169-6295-1599 
METHOD We paid attention on the submitter's remark, saying the secondary structure 
METHOD predition was quite accurate. Therefore we believed the structure of T0044 
METHOD was an irregular alpha/beta type. Furthermore we took into account the 
METHOD functional similarity: ATP-binding might be required to the parent 
METHOD structure. The target sequence, its apparently homologues sequences and 
METHOD their alignment were threaded on the structural library composed from PDB 
METHOD rel.83. The structure of 1asyA ranked at the relatively higher positions. 
METHOD Its similar fold (1atiA) has the most preferable secondary structure 
METHOD arrangement, and they have the ATP-binding site. 
MODEL 1 
PARENT 1ASY_A 
M 1 R 240 
V 2 T 241 
K 3 V 242 
R 4 T 243 
M 5 N 244 
I 6 Q 245 
A 7 A 246 
L 8 I 247 
D 9 F 248 
G 10 R 249 
A 11 I 250 
Q 12 Q 251 
G 13 A 252 
E 14 G 253 
G 15 V 254 
G 16 C 255 
G 17 E 256 
Q 18 L 257 
I 19 F 258 
L 20 R 259 
R 21 E 260 
S 22 Y 261 
A 23 L 262 
L 24 A 263 
S 25 T 264 
L 26 K 265 
S 27 K 266 
M 28 F 267 
I 29 T 268 
T 30 E 269 
G 31 V 270 
Q 32 H 271 
P 33 T 272 
F 34 P 273 
T 35 K 274 
I 36 L 275 
T 37 L 276 
S 38 G 277 
I 39 A 278 
R 40 P 279 
A 41 S 280 
G 42 E 281 
R 43 G 282 
A 44 G 283 
K 45 S 284 
P 46 S 285 
G 47 V 286 
L 48 F 287 
L 49 E 288 
R 50 V 289 
Q 51 T 290 
H 52 Y 291 
L 53 F 292 
T 54 K 293 
A 55 G 294 
V 56 K 295 
K 57 A 296 
A 58 Y 297 
A 59 L 298 
T 60 A 299 
E 61 Q 300 
I 62 S 301 
C 63 P 302 
G 64 Q 303 
A 65 F 304 
T 66 N 305 
V 67 K 306 
E 68 Q 307 
G 69 Q 308 
A 70 L 309 
E 71 I 310 
L 72 V 311 
G 73 A 312 
S 74 D 313 
Q 75 F 314 
R 76 E 315 
L 77 R 316 
L 78 V 317 
F 79 Y 318 
R 80 E 319 
P 81 I 320 
G 82 G 321 
T 83 P 322 
V 84 V 323 
R 85 F 324 
G 86 R 325 
G 87 A 326 
D 88 E 327 
G 94 N 328 
S 95 S 329 
A 96 N 330 
G 97 T 331 
S 98 H 332 
C 99 R 333 
T 100 H 334 
L 101 M 335 
V 102 T 336 
L 103 E 337 
Q 104 F 338 
T 105 T 339 
V 106 G 340 
L 107 L 341 
P 108 D 342 
A 109 M 343 
L 110 E 344 
W 111 M 345 
F 112 A 346 
A 113 F 347 
D 114 E 348 
G 115 E 349 
P 116 H 350 
S 117 Y 351 
R 118 H 352 
V 119 E 353 
E 120 V 354 
V 121 L 355 
S 122 D 356 
P 131 T 357 
P 132 L 358 
A 133 S 359 
D 134 E 360 
F 135 L 361 
I 136 F 362 
R 137 V 363 
R 138 F 364 
V 139 I 365 
L 140 F 366 
E 141 S 367 
P 142 E 368 
L 143 L 369 
L 144 P 370 
A 145 K 371 
K 146 R 372 
I 147 F 373 
G 148 A 374 
Q 151 H 375 
Q 152 E 376 
T 153 I 377 
T 154 E 378 
L 155 L 379 
L 156 V 380 
R 157 R 381 
H 158 K 382 
G 159 Q 383 
F 160 Y 384 
Y 161 P 385 
P 162 V 386 
A 163 E 387 
G 164 E 388 
G 165 F 389 
G 166 K 390 
V 167 L 391 
S 173 P 392 
P 174 K 393 
V 175 D 394 
A 176 G 395 
S 177 K 396 
F 178 M 397 
N 179 V 398 
T 180 R 399 
L 181 L 400 
Q 182 T 401 
L 183 Y 402 
G 184 K 403 
E 185 E 404 
R 186 G 405 
G 187 I 406 
N 188 E 407 
I 189 M 408 
V 190 L 409 
Q 191 R 410 
M 192 A 411 
R 193 A 412 
G 194 G 413 
E 195 K 414 
V 196 E 415 
L 198 I 416 
A 199 G 417 
G 200 D 418 
P 202 F 419 
R 203 E 420 
H 204 D 421 
V 205 L 422 
A 206 S 423 
E 207 T 424 
R 208 E 425 
E 209 N 426 
I 210 E 427 
A 211 K 428 
T 212 F 429 
L 213 L 430 
A 214 G 431 
G 215 K 432 
S 216 L 433 
F 217 V 434 
S 218 R 435 
L 219 D 436 
H 220 K 437 
E 221 Y 438 
Q 222 D 439 
N 223 T 440 
I 224 D 441 
H 225 F 442 
N 226 Y 443 
L 227 I 444 
P 228 L 445 
R 229 D 446 
D 230 K 447 
Q 231 F 448 
G 232 P 449 
P 233 L 450 
G 234 E 451 
N 235 I 452 
T 236 R 453 
V 237 P 454 
S 238 F 455 
L 239 Y 456 
E 240 T 457 
V 241 M 458 
E 242 P 459 
S 243 D 460 
E 244 P 461 
N 245 A 462 
I 246 N 463 
T 247 Y 466 
E 248 S 467 
R 249 N 468 
F 250 S 469 
F 251 Y 470 
V 252 D 471 
V 253 F 472 
G 254 F 473 
E 255 M 474 
K 256 R 475 
R 257 E 477 
V 258 E 478 
S 259 I 479 
A 260 L 480 
E 261 S 481 
V 262 G 482 
V 263 A 483 
A 264 Q 484 
A 265 R 485 
Q 266 I 486 
L 267 H 487 
V 268 D 488 
K 269 H 489 
E 270 A 490 
V 271 L 491 
K 272 L 492 
R 273 Q 493 
Y 274 E 494 
L 275 R 495 
A 276 M 496 
S 277 K 497 
T 278 A 498 
A 279 H 499 
A 280 G 500 
V 281 L 501 
G 282 S 502 
E 283 P 503 
Y 284 E 504 
L 285 D 505 
A 286 P 506 
D 287 L 508 
Q 288 K 509 
L 289 D 510 
V 290 Y 511 
L 291 C 512 
P 292 D 513 
M 293 G 514 
A 294 F 515 
L 295 S 516 
A 296 Y 517 
G 297 G 518 
A 298 C 519 
G 299 P 520 
E 300 P 521 
F 301 H 522 
T 302 A 523 
V 303 G 524 
A 304 G 525 
H 305 G 526 
P 306 I 527 
S 307 G 528 
C 308 L 529 
H 309 E 530 
L 310 R 531 
L 311 V 532 
T 312 V 533 
N 313 M 534 
I 314 F 535 
A 315 Y 536 
V 316 L 537 
V 317 L 539 
E 318 K 540 
R 319 N 541 
F 320 I 542 
L 321 R 543 
P 322 R 544 
V 323 A 545 
R 324 S 546 
F 325 L 547 
S 326 F 548 
L 327 P 549 
I 328 R 550 
E 329 D 551 
T 330 P 552 
D 331 K 553 
G 332 R 554 
V 333 L 555 
T 334 R 556 
R 335 P 557 
TER 
END 
