PFRMAT AL 
TARGET T0044 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 7/15/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0044" has a significant match 
REMARK pdb1mla       7.415     0.159    -1.584  MOLECULE: MALONYL-COENZYME A ACYL CARRIER PROTEIN 
REMARK                                          SCOP: 3-127,198-307: A/B; Catalytic domain of malonyl-CoA ACP transacylase 
REMARK                                          SCOP: 128-197: A+B; Ferredoxin-like 
REMARK pdb1ukz       5.846     0.131     7.723  URIDYLATE KINASE (E.C.2.7.4.-) COMPLEXED WITH ADP AND AMP 
REMARK                                          SCOP: A/B; P-loop containing nucleotide triphosphate hydrolases 
REMARK pdb1xyz_A     5.650     0.127   -18.271  MOLECULE: 1,4-BETA-D-XYLAN-XYLANOHYDROLASE; 
REMARK                                          SCOP: A/B; beta/alpha (TIM)-barrel 
REMARK pdb1isc_A     4.941     0.114     0.991  IRON(III) SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-82: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 83-192: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb1exp       4.517     0.107   -29.374  MOLECULE: BETA-1,4-D-GLYCANASE CEX-CD; 
REMARK                                          SCOP: A/B; beta/alpha (TIM)-barrel 
REMARK pdb2reb       4.226     0.102   -20.129  REC A PROTEIN (E.C.3.4.99.37) 
REMARK                                          SCOP: 3-268: A/B; P-loop containing nucleotide triphosphate hydrolases 
REMARK                                          SCOP: 269-328: A+B; Anti-LPS factor/recA domain 
REMARK pdb5pal       3.748     0.093    15.971  PARVALBUMIN (ALPHA LINEAGE) 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb4xia_A     3.280     0.085   -39.551  D-*XYLOSE ISOMERASE (E.C.5.3.1.5), D-*SORBITOL COMPLEX 
REMARK                                          SCOP: A/B; beta/alpha (TIM)-barrel 
REMARK pdb1kaz       3.229     0.084    -4.235  MOLECULE: 70KD HEAT SHOCK COGNATE PROTEIN; 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0044        MVKRMIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLR 
REMARK                                               ::|:#   |  :||| . 
REMARK pdb1mla      ................................QFAFVFPGQGSQTVGMLA 
REMARK  
REMARK t0044        QHLTAVKAATEICGATVEGAELGSQ.RLLFRPGTVRGGDYRFAIGSAGSC 
REMARK              : :  ||.| ||.. ..|   :|..   |: :|  :  | |  . .|  : 
REMARK pdb1mla      DMAASYPIVEETFAEASA..ALGYDLWALTQQGPAEELNKT.WQTQP..A 
REMARK  
REMARK t0044        TLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGI 
REMARK               |||  ||  || .|||:.... . || | |# | :   |  |: :#|#| 
REMARK pdb1mla      LLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCAGVI..DFADAVRL 
REMARK  
REMARK t0044        HQQTTLLRHGFYPAG.GGVVATEVSPVASFNT.LQLGERGNIVQM..... 
REMARK               :.:. . .  :| | :::|:    | |:|:. |:  ::||||:|      
REMARK pdb1mla      VEMRGKFMQEAVPEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPVNFNS 
REMARK  
REMARK t0044        RGEVLLAGVPRHVAEREIATLA..GSFSLHEQNIHNLPRDQGPGNTVSLE 
REMARK              .|.||||| |:. |||#|| |.  |  :  :.| | ||      |: .|| 
REMARK pdb1mla      PGQVVIAG.HKEAVERAGAACKAAGAKRALPLPVSVPS......HCALMK 
REMARK  
REMARK t0044        VESENITERFFVVGEKRVSAEVVAA...QLVKEVKRY...LASTAAVGEY 
REMARK                 |.| |:|##: #:.:: .|:     :: ||.|:.   ||| :    : 
REMARK pdb1mla      PAADKLAVELAKITFNAPTVPVVNNVDVKCETNGDAIRDALVRQLYNPVQ 
REMARK  
REMARK t0044        LADQLVLPMALAGAGEFTVAHPSCHLLTNIAVVERFLP.VRFS.LIETDG 
REMARK              || :||  || .|. :|..: |:# .    : |:|. | ::.| | : :  
REMARK pdb1mla      WT.KSVEYMAAQGVEHLYEVGPGKVLT...GLTKRIVDTLTASALNEPSA 
REMARK  
REMARK t0044        VTRVSIEGSHHHHHH 
REMARK              |..|            
REMARK pdb1mla      MAAAL.......... 
REMARK  
PARENT 1mla 
P 33  Q 3 
F 34  F 4 
T 35  A 5 
I 36  F 6 
T 37  V 7 
S 38  F 8 
I 39  P 9 
R 40  G 10 
A 41  Q 11 
G 42  G 12 
R 43  S 13 
A 44  Q 14 
K 45  T 15 
P 46  V 16 
G 47  G 17 
L 48  M 18 
L 49  L 19 
R 50  A 20 
Q 51  D 21 
H 52  M 22 
L 53  A 23 
T 54  A 24 
A 55  S 25 
V 56  Y 26 
K 57  P 27 
A 58  I 28 
A 59  V 29 
T 60  E 30 
E 61  E 31 
I 62  T 32 
C 63  F 33 
G 64  A 34 
A 65  E 35 
T 66  A 36 
V 67  S 37 
E 68  A 38 
E 71  A 39 
L 72  L 40 
G 73  G 41 
S 74  Y 42 
Q 75  D 43 
R 76  W 45 
L 77  A 46 
L 78  L 47 
F 79  T 48 
R 80  Q 49 
P 81  Q 50 
G 82  G 51 
T 83  P 52 
V 84  A 53 
R 85  E 54 
G 86  E 55 
G 87  L 56 
D 88  N 57 
Y 89  K 58 
R 90  T 59 
A 92  W 60 
I 93  Q 61 
G 94  T 62 
S 95  Q 63 
A 96  P 64 
C 99  A 65 
T 100  L 66 
L 101  L 67 
V 102  T 68 
L 103  A 69 
Q 104  S 70 
T 105  V 71 
V 106  A 72 
L 107  L 73 
P 108  Y 74 
A 109  R 75 
L 110  V 76 
W 111  W 77 
F 112  Q 78 
A 113  Q 79 
D 114  Q 80 
G 115  G 81 
P 116  G 82 
S 117  K 83 
R 118  A 84 
V 119  P 85 
E 120  A 86 
V 121  M 87 
S 122  M 88 
G 123  A 89 
G 124  G 90 
T 125  H 91 
D 126  S 92 
N 127  L 93 
P 128  G 94 
S 129  E 95 
A 130  Y 96 
P 131  S 97 
P 132  A 98 
A 133  L 99 
D 134  V 100 
F 135  C 101 
I 136  A 102 
R 137  G 103 
R 138  V 104 
V 139  I 105 
P 142  D 106 
L 143  F 107 
L 144  A 108 
A 145  D 109 
K 146  A 110 
I 147  V 111 
G 148  R 112 
I 149  L 113 
H 150  V 114 
Q 151  E 115 
Q 152  M 116 
T 153  R 117 
T 154  G 118 
L 155  K 119 
L 156  F 120 
R 157  M 121 
H 158  Q 122 
G 159  E 123 
F 160  A 124 
Y 161  V 125 
P 162  P 126 
A 163  E 127 
G 164  G 128 
G 165  G 130 
G 166  A 131 
V 167  M 132 
V 168  A 133 
A 169  A 134 
T 170  I 135 
E 171  I 136 
V 172  G 137 
S 173  L 138 
P 174  D 139 
V 175  D 140 
A 176  A 141 
S 177  S 142 
F 178  I 143 
N 179  A 144 
T 180  K 145 
L 181  C 147 
Q 182  E 148 
L 183  E 149 
G 184  A 150 
E 185  A 151 
R 186  E 152 
G 187  G 153 
N 188  Q 154 
I 189  V 155 
V 190  V 156 
Q 191  S 157 
M 192  P 158 
R 193  P 164 
G 194  G 165 
E 195  Q 166 
V 196  V 167 
L 197  V 168 
L 198  I 169 
A 199  A 170 
G 200  G 171 
P 202  H 172 
R 203  K 173 
H 204  E 174 
V 205  A 175 
A 206  V 176 
E 207  E 177 
R 208  R 178 
E 209  A 179 
I 210  G 180 
A 211  A 181 
T 212  A 182 
L 213  C 183 
A 214  K 184 
G 215  G 187 
S 216  A 188 
F 217  K 189 
S 218  R 190 
L 219  A 191 
H 220  L 192 
E 221  P 193 
Q 222  L 194 
N 223  P 195 
I 224  V 196 
H 225  S 197 
N 226  V 198 
L 227  P 199 
P 228  S 200 
N 235  H 201 
T 236  C 202 
V 237  A 203 
S 238  L 204 
L 239  M 205 
E 240  K 206 
V 241  P 207 
E 242  A 208 
S 243  A 209 
E 244  D 210 
N 245  K 211 
I 246  L 212 
T 247  A 213 
E 248  V 214 
R 249  E 215 
F 250  L 216 
F 251  A 217 
V 252  K 218 
V 253  I 219 
G 254  T 220 
E 255  F 221 
K 256  N 222 
R 257  A 223 
V 258  P 224 
S 259  T 225 
A 260  V 226 
E 261  P 227 
V 262  V 228 
V 263  V 229 
A 264  N 230 
A 265  N 231 
Q 266  K 235 
L 267  C 236 
V 268  E 237 
K 269  T 238 
E 270  N 239 
V 271  G 240 
K 272  D 241 
R 273  A 242 
Y 274  I 243 
L 275  L 247 
A 276  V 248 
S 277  R 249 
T 278  Q 250 
A 279  L 251 
A 280  Y 252 
V 281  N 253 
G 282  P 254 
E 283  V 255 
Y 284  Q 256 
L 285  W 257 
A 286  T 258 
Q 288  K 259 
L 289  S 260 
V 290  V 261 
L 291  E 262 
P 292  Y 263 
M 293  M 264 
A 294  A 265 
L 295  A 266 
A 296  Q 267 
G 297  G 268 
A 298  V 269 
G 299  E 270 
E 300  H 271 
F 301  L 272 
T 302  Y 273 
V 303  E 274 
A 304  V 275 
H 305  G 276 
P 306  P 277 
S 307  G 278 
C 308  K 279 
H 309  V 280 
L 310  L 281 
L 311  T 282 
A 315  G 283 
V 316  L 284 
V 317  T 285 
E 318  K 286 
R 319  R 287 
F 320  I 288 
L 321  V 289 
P 322  D 290 
V 323  L 292 
R 324  T 293 
F 325  A 294 
S 326  S 295 
L 327  L 297 
I 328  N 298 
E 329  E 299 
T 330  P 300 
D 331  S 301 
G 332  A 302 
V 333  M 303 
T 334  A 304 
R 335  A 305 
V 336  A 306 
S 337  L 307 
TER 
END 
