PFRMAT AL 
TARGET T0044 
AUTHOR 2746-8822-4809 
METHOD SEQFOLD(MSI) IMPLEMENTATION OF FOLD RECOGNITION 
METHOD BASED ON FISCHER AND EISENBERG PROT. SCI. 5, 943, 1996 
METHOD GLOBAL-LOCAL SEQUENCE ALIGNEMENT DRIVEN BY PREDICTED 
METHOD SECONDARY STRUCTURE  
METHOD CONSEQUENTLY - MODELS ARE ALWAYS BASED ON SINGLE SEQUENCE 
METHOD NOVEL SIGNIFICANCE ANALYSIS BASED ON RANDOM ALIGNMENTS  
METHOD FOLD LIBRARY BASED ON SCOP 1.37 RELEASE  
MODEL 5 
PARENT 2pol_A 
M 1     L 10    
V 2     L 11    
K 3     K 12    
R 4     P 13    
M 5     L 14    
I 6     Q 15    
A 7     Q 16    
L 8     V 17    
D 9     S 18    
G 10    G 19    
A 11    P 20    
Q 12    L 21    
G 13    G 22    
E 14    G 23    
G 15    R 24    
REMARK TAR GAP 6 
G 16    G 31    
G 17    N 32    
Q 18    L 33    
I 19    L 34    
L 20    L 35    
R 21    Q 36    
S 22    V 37    
A 23    A 38    
L 24    D 39    
S 25    G 40    
L 26    T 41    
S 27    L 42    
M 28    S 43    
I 29    L 44    
T 30    T 45    
G 31    G 46    
Q 32    T 47    
P 33    D 48    
F 34    L 49    
T 35    E 50    
I 36    M 51    
T 37    E 52    
S 38    M 53    
I 39    V 54    
REMARK TAR GAP 1 
R 40    R 56    
A 41    V 57    
G 42    A 58    
R 43    L 59    
A 44    V 60    
K 45    Q 61    
P 46    P 62    
G 47    H 63    
L 48    E 64    
L 49    P 65    
R 50    G 66    
Q 51    A 67    
H 52    T 68    
L 53    T 69    
T 54    V 70    
A 55    P 71    
V 56    A 72    
K 57    R 73    
A 58    K 74    
A 59    F 75    
T 60    F 76    
E 61    D 77    
I 62    I 78    
C 63    C 79    
G 64    R 80    
A 65    G 81    
T 66    L 82    
V 67    P 83    
E 68    E 84    
G 69    G 85    
A 70    A 86    
E 71    E 87    
L 72    I 88    
G 73    A 89    
REMARK TAR GAP 4 
S 74    G 94    
Q 75    E 95    
R 76    R 96    
L 77    M 97    
L 78    L 98    
REMARK REF GAP 5 
V 84    V 99    
R 85    R 100   
G 86    S 101   
G 87    G 102   
D 88    R 103   
Y 89    S 104   
R 90    R 105   
F 91    F 106   
A 92    S 107   
I 93    L 108   
G 94    S 109   
S 95    T 110   
A 96    L 111   
G 97    P 112   
S 98    A 113   
C 99    A 114   
T 100   D 115   
REMARK REF GAP 6 
L 107   F 116   
P 108   P 117   
A 109   N 118   
L 110   L 119   
REMARK TAR GAP 2 
W 111   W 122   
REMARK REF GAP 4 
P 116   Q 123   
S 117   S 124   
R 118   E 125   
V 119   V 126   
E 120   E 127   
V 121   F 128   
S 122   T 129   
REMARK REF GAP 8 
P 131   L 130   
P 132   P 131   
A 133   Q 132   
D 134   A 133   
F 135   T 134   
I 136   M 135   
R 137   K 136   
R 138   R 137   
V 139   L 138   
L 140   I 139   
E 141   E 140   
P 142   A 141   
L 143   T 142   
L 144   Q 143   
A 145   F 144   
K 146   S 145   
I 147   M 146   
G 148   A 147   
I 149   H 148   
H 150   Q 149   
Q 151   D 150   
Q 152   V 151   
T 153   R 152   
T 154   Y 153   
L 155   Y 154   
L 156   L 155   
R 157   N 156   
H 158   G 157   
G 159   M 158   
F 160   L 159   
Y 161   F 160   
P 162   E 161   
A 163   T 162   
G 164   E 163   
G 165   G 164   
G 166   E 165   
V 167   E 166   
V 168   L 167   
A 169   R 168   
T 170   T 169   
E 171   V 170   
V 172   A 171   
S 173   T 172   
P 174   D 173   
V 175   G 174   
A 176   H 175   
S 177   R 176   
F 178   L 177   
N 179   A 178   
REMARK TAR GAP 2 
T 180   S 181   
L 181   M 182   
Q 182   P 183   
L 183   I 184   
G 184   G 185   
E 185   Q 186   
REMARK TAR GAP 4 
R 186   H 191   
G 187   S 192   
N 188   V 193   
I 189   I 194   
V 190   V 195   
Q 191   P 196   
M 192   R 197   
R 193   K 198   
G 194   G 199   
E 195   V 200   
V 196   I 201   
REMARK TAR GAP 4 
L 197   M 206   
L 198   L 207   
A 199   D 208   
G 200   G 209   
REMARK TAR GAP 4 
V 201   L 214   
P 202   R 215   
R 203   V 216   
H 204   Q 217   
V 205   I 218   
A 206   G 219   
E 207   S 220   
R 208   N 221   
E 209   N 222   
I 210   I 223   
A 211   R 224   
T 212   A 225   
L 213   H 226   
A 214   V 227   
G 215   G 228   
S 216   D 229   
F 217   F 230   
S 218   I 231   
L 219   F 232   
H 220   T 233   
E 221   S 234   
Q 222   K 235   
N 223   L 236   
I 224   V 237   
H 225   D 238   
N 226   G 239   
REMARK TAR GAP 8 
L 227   L 248   
P 228   P 249   
R 229   K 250   
D 230   N 251   
Q 231   P 252   
G 232   D 253   
P 233   K 254   
REMARK REF GAP 4 
S 238   H 255   
L 239   L 256   
E 240   E 257   
V 241   A 258   
E 242   G 259   
S 243   C 260   
E 244   D 261   
N 245   L 262   
I 246   L 263   
T 247   K 264   
E 248   Q 265   
R 249   A 266   
F 250   F 267   
REMARK REF GAP 7 
V 258   A 268   
S 259   R 269   
A 260   A 270   
E 261   A 271   
V 262   I 272   
V 263   L 273   
A 264   S 274   
A 265   N 275   
Q 266   E 276   
L 267   K 277   
V 268   F 278   
K 269   R 279   
E 270   G 280   
V 271   V 281   
K 272   R 282   
R 273   L 283   
Y 274   Y 284   
L 275   V 285   
A 276   S 286   
S 277   E 287   
REMARK TAR GAP 5 
T 278   T 293   
A 279   A 294   
A 280   N 295   
V 281   N 296   
G 282   P 297   
E 283   E 298   
Y 284   Q 299   
L 285   E 300   
A 286   E 301   
D 287   A 302   
Q 288   E 303   
L 289   E 304   
V 290   I 305   
L 291   L 306   
P 292   D 307   
M 293   V 308   
A 294   T 309   
L 295   Y 310   
A 296   S 311   
G 297   G 312   
A 298   A 313   
REMARK REF GAP 1 
E 300   E 314   
F 301   M 315   
T 302   E 316   
V 303   I 317   
A 304   G 318   
H 305   F 319   
P 306   N 320   
S 307   V 321   
C 308   S 322   
H 309   Y 323   
L 310   V 324   
L 311   L 325   
REMARK REF GAP 3 
A 315   D 326   
V 316   V 327   
V 317   L 328   
E 318   N 329   
R 319   A 330   
F 320   L 331   
L 321   K 332   
P 322   C 333   
V 323   E 334   
R 324   N 335   
F 325   V 336   
S 326   R 337   
L 327   M 338   
I 328   M 339   
E 329   L 340   
T 330   T 341   
D 331   D 342   
G 332   S 343   
V 333   V 344   
T 334   S 345   
R 335   S 346   
V 336   V 347   
S 337   Q 348   
I 338   I 349   
E 339   E 350   
G 340   D 351   
S 341   A 352   
H 342   A 353   
H 343   S 354   
H 344   Q 355   
H 345   S 356   
TER 
END 
