PFRMAT SS 
TARGET T0085 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t85.t98_6.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 5.06214 
METHOD 
MODEL 1 
A C 0.90 
D C 0.83 
A C 0.85 
P C 0.85 
F C 0.68 
E C 0.68 
G C 0.75 
R C 0.71 
K C 0.58 
K C 0.71 
C C 0.74 
S C 0.60 
S C 0.51 
C C 0.69 
H C 0.70 
K C 0.63 
A H 0.57 
Q H 0.52 
A H 0.50 
Q C 0.53 
S C 0.57 
W H 0.66 
K H 0.64 
D H 0.61 
T H 0.59 
A H 0.48 
H H 0.53 
A H 0.70 
K H 0.64 
A H 0.66 
M H 0.77 
E H 0.74 
S H 0.60 
L H 0.62 
K H 0.63 
P H 0.64 
N C 0.62 
V H 0.55 
K H 0.73 
K H 0.80 
E H 0.78 
A H 0.73 
K H 0.56 
Q H 0.51 
K H 0.42 
A C 0.51 
K C 0.48 
L C 0.60 
D C 0.87 
P C 0.79 
A C 0.74 
K C 0.84 
D C 0.86 
Y C 0.71 
T C 0.66 
Q C 0.68 
D C 0.56 
K C 0.49 
D C 0.53 
C C 0.50 
V H 0.39 
G H 0.47 
C H 0.45 
H C 0.45 
V C 0.48 
D C 0.59 
G C 0.65 
F C 0.78 
G C 0.87 
Q C 0.83 
K C 0.83 
G C 0.92 
G C 0.88 
Y C 0.66 
T C 0.57 
I C 0.48 
E C 0.46 
S C 0.68 
P C 0.77 
K C 0.76 
P C 0.71 
M E 0.49 
L E 0.58 
T E 0.50 
G C 0.62 
V C 0.74 
G C 0.83 
C C 0.70 
E C 0.48 
S C 0.51 
C C 0.63 
H C 0.80 
G C 0.93 
P C 0.87 
G C 0.69 
R C 0.57 
N C 0.51 
F C 0.57 
R C 0.75 
G C 0.85 
D C 0.87 
H C 0.77 
R C 0.76 
K C 0.80 
S C 0.87 
G C 0.81 
Q C 0.53 
A C 0.44 
F H 0.37 
E C 0.36 
K C 0.46 
S C 0.69 
G C 0.81 
K C 0.83 
K C 0.81 
T C 0.94 
P C 0.91 
R H 0.56 
K H 0.80 
D H 0.81 
L H 0.88 
A H 0.88 
K H 0.79 
K C 0.58 
G C 0.84 
Q C 0.73 
D C 0.62 
F C 0.61 
H C 0.48 
F H 0.61 
E H 0.75 
E H 0.82 
R H 0.76 
C H 0.63 
S H 0.72 
A H 0.61 
C H 0.51 
H C 0.48 
L C 0.55 
N C 0.60 
Y C 0.61 
E C 0.64 
G C 0.76 
S C 0.90 
P C 0.74 
W C 0.56 
K C 0.44 
G E 0.66 
A E 0.73 
K E 0.70 
A E 0.53 
P C 0.59 
Y C 0.70 
T C 0.89 
P C 0.87 
F C 0.84 
T C 0.85 
P C 0.52 
E H 0.62 
V H 0.51 
D C 0.43 
A C 0.37 
K E 0.54 
Y E 0.60 
T E 0.57 
F E 0.55 
K E 0.49 
F C 0.41 
D H 0.52 
E H 0.67 
M H 0.65 
V H 0.67 
K H 0.63 
E H 0.51 
V H 0.53 
K H 0.49 
A H 0.45 
M H 0.48 
H H 0.44 
E C 0.49 
H C 0.53 
Y C 0.67 
K C 0.69 
L C 0.43 
E E 0.42 
G E 0.56 
V E 0.56 
F E 0.45 
E C 0.58 
G C 0.82 
E C 0.94 
P C 0.90 
K C 0.69 
F C 0.68 
K C 0.76 
F C 0.79 
H C 0.81 
D C 0.53 
E C 0.53 
F C 0.51 
Q C 0.50 
A C 0.60 
S C 0.65 
A C 0.65 
K C 0.77 
P C 0.59 
A C 0.49 
K C 0.54 
K C 0.67 
G C 0.89 
K C 0.90 
END 
