REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0085AL215_1_2 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : ZHU-JUN 
REMARK  ---------------------------------------------------------- 
TARGET     T0085  
AUTHOR     4070-8855-4894  
METHOD     The target is compared with PDB25 database (U.Hobohm et al., 1992).  
METHOD     For each structure in PDB25, a model is built in the following way:  
METHOD     the sequence (query) is compared with NR database using transitive   
METHOD     BLAST (Neuwald et al. 1997). Similar sequences are collected and   
METHOD     purged at score 150.  Those sequences are aligned with query   
METHOD     sequence using Bayesian aligner (Zhu et al., 1998) and a   
METHOD     profile-like model is built (Lawrence et al. 1993; Gribskov et al.,  
METHOD     1987; unpublished result by Jun Zhu, Roland Luthy and Charlse E.   
METHOD     Lawrence).  Then, the target file is compared with the models   
METHOD     derived from PDB25.  
MODEL     1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1wad 
ATOM      1  N   PRO    79      19.634   7.012  -6.519  1.00  0.00              
ATOM      2  CA  PRO    79      18.251   6.987  -6.077  1.00  0.00              
ATOM      3  C   PRO    79      17.403   6.172  -7.063  1.00  0.00              
ATOM      4  O   PRO    79      16.533   5.417  -6.646  1.00  0.00              
ATOM      5  N   LYS    80      17.693   6.332  -8.336  1.00  0.00              
ATOM      6  CA  LYS    80      17.004   5.653  -9.427  1.00  0.00              
ATOM      7  C   LYS    80      17.182   4.148  -9.299  1.00  0.00              
ATOM      8  O   LYS    80      16.242   3.363  -9.410  1.00  0.00              
ATOM      9  N   PRO    81      18.417   3.737  -9.010  1.00  0.00              
ATOM     10  CA  PRO    81      18.685   2.305  -8.840  1.00  0.00              
ATOM     11  C   PRO    81      17.974   1.784  -7.605  1.00  0.00              
ATOM     12  O   PRO    81      17.298   0.758  -7.648  1.00  0.00              
ATOM     13  N   MET    82      18.068   2.547  -6.513  1.00  0.00              
ATOM     14  CA  MET    82      17.462   2.108  -5.262  1.00  0.00              
ATOM     15  C   MET    82      15.953   2.075  -5.343  1.00  0.00              
ATOM     16  O   MET    82      15.294   1.191  -4.806  1.00  0.00              
ATOM     17  N   LEU    83      15.362   3.061  -6.034  1.00  0.00              
ATOM     18  CA  LEU    83      13.931   3.194  -6.086  1.00  0.00              
ATOM     19  C   LEU    83      13.240   2.552  -7.244  1.00  0.00              
ATOM     20  O   LEU    83      12.016   2.315  -7.170  1.00  0.00              
ATOM     21  N   THR    84      13.933   2.312  -8.375  1.00  0.00              
ATOM     22  CA  THR    84      13.262   1.751  -9.534  1.00  0.00              
ATOM     23  C   THR    84      13.929   0.512 -10.106  1.00  0.00              
ATOM     24  O   THR    84      13.372  -0.105 -11.039  1.00  0.00              
ATOM     25  N   GLY    85      15.083   0.114  -9.600  1.00  0.00              
ATOM     26  CA  GLY    85      15.836  -1.019 -10.151  1.00  0.00              
ATOM     27  C   GLY    85      15.088  -2.309 -10.065  1.00  0.00              
ATOM     28  O   GLY    85      14.327  -2.562  -9.116  1.00  0.00              
ATOM     29  N   VAL    86      15.295  -3.239 -11.017  1.00  0.00              
ATOM     30  CA  VAL    86      14.561  -4.489 -10.934  1.00  0.00              
ATOM     31  C   VAL    86      15.251  -5.504 -10.018  1.00  0.00              
ATOM     32  O   VAL    86      14.613  -6.415  -9.515  1.00  0.00              
ATOM     33  N   GLY    87      16.548  -5.332  -9.846  1.00  0.00              
ATOM     34  CA  GLY    87      17.318  -6.215  -8.962  1.00  0.00              
ATOM     35  C   GLY    87      18.300  -5.344  -8.178  1.00  0.00              
ATOM     36  O   GLY    87      18.835  -4.383  -8.716  1.00  0.00              
ATOM     37  N   CYS    88      18.489  -5.656  -6.902  1.00  0.00              
ATOM     38  CA  CYS    88      19.415  -4.876  -6.090  1.00  0.00              
ATOM     39  C   CYS    88      18.814  -3.546  -5.694  1.00  0.00              
ATOM     40  O   CYS    88      19.524  -2.606  -5.339  1.00  0.00              
ATOM     41  N   GLU    89      17.479  -3.454  -5.786  1.00  0.00              
ATOM     42  CA  GLU    89      16.835  -2.181  -5.382  1.00  0.00              
ATOM     43  C   GLU    89      16.208  -2.410  -3.985  1.00  0.00              
ATOM     44  O   GLU    89      16.262  -3.497  -3.448  1.00  0.00              
ATOM     45  N   SER    90      15.580  -1.365  -3.466  1.00  0.00              
ATOM     46  CA  SER    90      14.942  -1.509  -2.136  1.00  0.00              
ATOM     47  C   SER    90      13.744  -2.420  -2.229  1.00  0.00              
ATOM     48  O   SER    90      13.340  -3.064  -1.264  1.00  0.00              
ATOM     49  N   CYS    91      13.120  -2.486  -3.416  1.00  0.00              
ATOM     50  CA  CYS    91      11.945  -3.346  -3.529  1.00  0.00              
ATOM     51  C   CYS    91      12.356  -4.805  -3.721  1.00  0.00              
ATOM     52  O   CYS    91      11.759  -5.673  -3.111  1.00  0.00              
ATOM     53  N   HIS    92      13.322  -5.011  -4.596  1.00  0.00              
ATOM     54  CA  HIS    92      13.802  -6.348  -4.939  1.00  0.00              
ATOM     55  C   HIS    92      15.305  -6.421  -4.661  1.00  0.00              
ATOM     56  O   HIS    92      16.132  -6.257  -5.551  1.00  0.00              
ATOM     57  N   GLY    93      15.646  -6.568  -3.384  1.00  0.00              
ATOM     58  CA  GLY    93      17.063  -6.524  -3.005  1.00  0.00              
ATOM     59  C   GLY    93      17.861  -7.684  -3.542  1.00  0.00              
ATOM     60  O   GLY    93      19.086  -7.512  -3.749  1.00  0.00              
END
