REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0085AL166_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : SB-FOLD 
REMARK  ---------------------------------------------------------- 
TARGET T0085  
AUTHOR 7397-8542-2481  
METHOD PSI-BLAST searches yielded low similarities to 2 cytochrome cc3 proteins,  
METHOD one in Aquifex aeolicus and one in Desulfovibrio vulgaris.    
METHOD By performing reverse PSI-BLAST searches on these two sequences,  
METHOD we found that the Desulfovibrio vulgaris cytochrome cc3 hits our target  
METHOD as well as three cytochromes with known structures.  All of the sequences  
METHOD found with the Desulfovibrio vulgaris cytochrome cc3 search contained  
METHOD four CxxCH motifs.  The three known cytochrome structures are classified  
METHOD as small protein, multihem cytochromes [duplication:  contains multiple   
METHOD CxxCH motifs].  These proteins contain very little secondary structure  
METHOD [one or two helices and 2 beta strands] and therefore we just aligned  
METHOD the target sequence to the CxxCH motifs.    
MODEL  1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 2cy3 
ATOM      1  N   CYS    11       8.890  37.254  14.931  1.00  0.00              
ATOM      2  CA  CYS    11      10.071  36.385  14.860  1.00  0.00              
ATOM      3  C   CYS    11       9.906  35.164  15.749  1.00  0.00              
ATOM      4  O   CYS    11      10.213  34.035  15.343  1.00  0.00              
ATOM      5  N   SER    12       9.419  35.401  16.963  1.00  0.00              
ATOM      6  CA  SER    12       9.234  34.335  17.951  1.00  0.00              
ATOM      7  C   SER    12       8.322  33.198  17.490  1.00  0.00              
ATOM      8  O   SER    12       8.502  32.064  17.918  1.00  0.00              
ATOM      9  N   SER    13       7.357  33.488  16.616  1.00  0.00              
ATOM     10  CA  SER    13       6.444  32.430  16.170  1.00  0.00              
ATOM     11  C   SER    13       7.203  31.294  15.491  1.00  0.00              
ATOM     12  O   SER    13       6.918  30.123  15.743  1.00  0.00              
ATOM     13  N   CYS    14       8.179  31.637  14.655  1.00  0.00              
ATOM     14  CA  CYS    14       8.981  30.618  13.994  1.00  0.00              
ATOM     15  C   CYS    14      10.181  30.242  14.866  1.00  0.00              
ATOM     16  O   CYS    14      10.457  29.059  15.049  1.00  0.00              
ATOM     17  N   HIS    15      10.877  31.253  15.391  1.00  0.00              
ATOM     18  CA  HIS    15      12.046  31.062  16.257  1.00  0.00              
ATOM     19  C   HIS    15      11.492  30.947  17.671  1.00  0.00              
ATOM     20  O   HIS    15      11.758  31.767  18.559  1.00  0.00              
ATOM     21  N   CYS    60      17.534  25.906  13.374  1.00  0.00              
ATOM     22  CA  CYS    60      16.577  24.878  13.774  1.00  0.00              
ATOM     23  C   CYS    60      17.198  23.516  14.039  1.00  0.00              
ATOM     24  O   CYS    60      16.668  22.732  14.828  1.00  0.00              
ATOM     25  N   CYS    63      18.399  20.522  19.376  1.00  0.00              
ATOM     26  CA  CYS    63      17.147  20.950  18.763  1.00  0.00              
ATOM     27  C   CYS    63      16.699  19.908  17.735  1.00  0.00              
ATOM     28  O   CYS    63      16.687  18.711  18.038  1.00  0.00              
ATOM     29  N   HIS    64      16.320  20.323  16.533  1.00  0.00              
ATOM     30  CA  HIS    64      15.905  19.352  15.513  1.00  0.00              
ATOM     31  C   HIS    64      17.208  18.886  14.867  1.00  0.00              
ATOM     32  O   HIS    64      17.542  19.224  13.730  1.00  0.00              
ATOM     33  N   CYS    88       6.508  25.541   7.783  1.00  0.00              
ATOM     34  CA  CYS    88       6.259  26.121   6.464  1.00  0.00              
ATOM     35  C   CYS    88       4.927  25.795   5.793  1.00  0.00              
ATOM     36  O   CYS    88       4.147  26.699   5.473  1.00  0.00              
ATOM     37  N   GLU    89       4.663  24.506   5.618  1.00  0.00              
ATOM     38  CA  GLU    89       3.462  24.040   4.946  1.00  0.00              
ATOM     39  C   GLU    89       2.140  24.373   5.625  1.00  0.00              
ATOM     40  O   GLU    89       1.258  24.934   4.984  1.00  0.00              
ATOM     41  N   SER    90       2.007  24.059   6.909  1.00  0.00              
ATOM     42  CA  SER    90       0.749  24.308   7.623  1.00  0.00              
ATOM     43  C   SER    90       0.221  25.727   7.468  1.00  0.00              
ATOM     44  O   SER    90      -0.951  25.925   7.143  1.00  0.00              
ATOM     45  N   CYS    91       1.084  26.716   7.670  1.00  0.00              
ATOM     46  CA  CYS    91       0.633  28.087   7.542  1.00  0.00              
ATOM     47  C   CYS    91       0.187  28.403   6.119  1.00  0.00              
ATOM     48  O   CYS    91      -0.909  28.936   5.920  1.00  0.00              
ATOM     49  N   HIS    92       1.016  28.050   5.133  1.00  0.00              
ATOM     50  CA  HIS    92       0.691  28.311   3.729  1.00  0.00              
ATOM     51  C   HIS    92      -0.648  27.690   3.348  1.00  0.00              
ATOM     52  O   HIS    92      -1.510  28.363   2.776  1.00  0.00              
ATOM     53  N   CYS   134       5.664  20.598  -3.404  1.00  0.00              
ATOM     54  CA  CYS   134       7.069  20.247  -3.183  1.00  0.00              
ATOM     55  C   CYS   134       8.023  21.000  -4.115  1.00  0.00              
ATOM     56  O   CYS   134       8.973  21.649  -3.661  1.00  0.00              
ATOM     57  N   SER   135       7.745  20.946  -5.414  1.00  0.00              
ATOM     58  CA  SER   135       8.605  21.596  -6.391  1.00  0.00              
ATOM     59  C   SER   135       8.606  23.110  -6.363  1.00  0.00              
ATOM     60  O   SER   135       9.529  23.745  -6.871  1.00  0.00              
ATOM     61  N   ALA   136       7.577  23.693  -5.762  1.00  0.00              
ATOM     62  CA  ALA   136       7.459  25.145  -5.686  1.00  0.00              
ATOM     63  C   ALA   136       8.203  25.725  -4.475  1.00  0.00              
ATOM     64  O   ALA   136       8.338  26.941  -4.347  1.00  0.00              
ATOM     65  N   CYS   137       8.648  24.854  -3.572  1.00  0.00              
ATOM     66  CA  CYS   137       9.393  25.296  -2.397  1.00  0.00              
ATOM     67  C   CYS   137      10.839  24.809  -2.521  1.00  0.00              
ATOM     68  O   CYS   137      11.783  25.546  -2.233  1.00  0.00              
ATOM     69  N   HIS   138      11.013  23.555  -2.930  1.00  0.00              
ATOM     70  CA  HIS   138      12.353  23.013  -3.143  1.00  0.00              
ATOM     71  C   HIS   138      12.645  23.419  -4.584  1.00  0.00              
ATOM     72  O   HIS   138      12.130  22.806  -5.531  1.00  0.00              
END
