REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0085AL017_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : SJOLANDER-THOMAS 
REMARK  ---------------------------------------------------------- 
TARGET T0085  
AUTHOR 5827-4749-3439   
METHOD T0085 prediction method  
METHOD   
METHOD As usual, we employed a two-pronged approach: (1) We scored the target   
METHOD against all the HMMs and threading models in our libraries, and (2) we   
METHOD gathered homologs to the target using one or more tools  
METHOD (such as iterated FASTA or PsiBLAST), constructed an   
METHOD HMM for the target and homologs (using UCSC's HMM software), and   
METHOD scored PDB. This yielded three sets of scores, which we then used   
METHOD to find a target-structure match.  
METHOD   
METHOD Since we didn't find sequence homologs using BLAST,  
METHOD we focused on analyzing scores given the sequence by the  
METHOD HMMs in our library. This analysis  
METHOD revealed four structures from the same SCOP   
METHOD superfamily (multi-heme cytochromes)  
METHOD to have the highest scores in our hmm library:  
METHOD d1wad, d2cy3, and d1czj. Of these three, d1wad and d2cy3  
METHOD had virtually identical scores for the general hmms   
METHOD in our library (constructed to represent the family as a whole).  
METHOD While the scores were only moderately strong (NLL scores of  
METHOD -15.5 and -14.5 respectively), analysis of the scores given  
METHOD a representative subset of PDB by each of the HMMs showed  
METHOD the scores to be at least two standard deviations away  
METHOD from the mean scores. (In unpublished experiments on proteins   
METHOD with solved structures, we have found these z-scores   
METHOD to provide additional information than the simply NLL-NULL  
METHOD score alone,   
METHOD and two standard deviations from the mean to be a conservative  
METHOD cutoff with high confidence of accuracy, especially when  
METHOD combined with NLL-NULL scores < -13 or so.   
METHOD  
METHOD We chose d2cy3 over d1wad primarily because the sequence similarity  
METHOD of the target and structure was superior in variable regions of   
METHOD the multiple alignment of superfamily members.  
METHOD  
METHOD We considered, but rejected, a cytochrome fold with a different  
METHOD SCOP classification: single heme cytochromes, including  
METHOD 1ycc, 3c2c, and 1ctj. This group had high scores, although not as high  
METHOD as the multi-heme scores. Of this latter group, only the hmm for 1ycc   
METHOD and homologs gave the target scores as strong as those  
METHOD given by the multi-heme HMMs.   
METHOD These structures were rejected for two reasons: (1) our target  
METHOD contains multiple hemes, making it more naturally a member  
METHOD of the multiple heme SCOP class; (2) the alignment of the target  
METHOD to these structures were extremely gappy, albeit with some  
METHOD sequence similarities in aligned regions.  
METHOD  
METHOD   
METHOD The alignment submitted for the prediction was obtained as follows:  
METHOD (1) The target and structure homologs were aligned to the HMM  
METHOD constructed for d2cy3 and homologs. In constructing this HMM  
METHOD we used prrp from Gotoh to align the sequences, constructed an  
METHOD HMM from the alignment using modelfromalign, and then re-estimated  
METHOD the HMM using weighted sequences (weighting scheme   
METHOD uses an estimation of the number of independent observations  
METHOD to derive total weights, relative weighting scheme from   
METHOD Henikoff & Henikoff).  
METHOD (2) The multiple alignment of the structure and homologs was  
METHOD examined to identify regions of high variability. We employed   
METHOD a log likelihood function to measure the similarity among  
METHOD subfamilies for physical-chemical constraints at each position.  
METHOD We also examined the alignment for  
METHOD gapped regions as an additional signal of essential variability.  
METHOD We excluded these high-variability regions. (Bayesian formula  
METHOD was published in Sjolander's thesis, available by ftp from  
METHOD ftp.cse.ucsc.edu in pub/protein/phylogeny.)  
METHOD (3) The threading and HMM alignments were compared to  
METHOD find regions where the alignments agreed with shifts of  
METHOD less than or equal to 2 residues.  
METHOD (4) The alignment submitted contains those portions of the  
METHOD automatic HMM alignment that passed the criteria of (2) and (3).  
METHOD  
METHOD We have omitted the N-terminal 4 residues from the alignment  
METHOD (a conserved ADAP motif in both structure and target),  
METHOD even though they are aligned by HMM and threading methods,  
METHOD and the log likelihood function is positive in that region.  
METHOD Our reason for doing so is the expectation that this N-terminal  
METHOD region of the target must have a different structure than  
METHOD d2cy3 given the presence of a heme-binding CXXCH motif,  
METHOD and the otherwise variable primary sequence in that area.  
METHOD  
METHOD This produced an alignment that starts at d2cy3 V32  
METHOD and ends at d2cy3 K100,  
METHOD and omits four residues in a variable region in the middle.   
METHOD The C-terminal almost 70 residues of the target are left unaligned.  
METHOD  
METHOD Examining the alignment of the target to these structures  
METHOD revealed a different order of heme groups: the target inserts  
METHOD a heme group at the N-terminus, aligns its last three heme  
METHOD groups to the first three of these superfamily members,  
METHOD and has no heme group to align to the last C-terminal heme  
METHOD group of the structures. We also found that the  C-terminal heme   
METHOD of the superfamily relatives of d2cy3  
METHOD has only weak similarity among superfamily members; some have  
METHOD CXXCH motifs, while others have CXXXXCH motifs.   
METHOD Interestingly, the conserved Histidine residues upstream of  
METHOD the CXXCH motifs that help coordinate the heme groups   
METHOD among superfamily members is not found in the target.   
METHOD  
METHOD  
METHOD The un-edited alignment is shown below:  
METHOD  
METHOD                      10        20        30        40        50  
METHOD                       |         |         |         |         |  
METHOD T0085   ADAPFEgrkkcsSCHKAQAQSWKDTAHAKAMESLKPNVKKEAKQKAKLDPAKDY-TQDKDCV  
METHOD d2cy3__ ADAPGD......DYVISAPEGMKAKPKGDKPGALQKT------VPFPHTKHATV-----ECV  
METHOD   
METHOD   
METHOD           60        70               80                    90       10  
METHOD            |         |                |                     |  
METHOD T0085   GCHVDGFGQKGGYTIEspkpmltGVGCESCHGPGRNFRGDhrksgqafeksgKKTPRKDLAK  
METHOD d2cy3__ QCHHTLEADG--GAVK.......KCTTSGCHDSLE-FRDK............ANAKDIKLV-  
METHOD   
METHOD   
METHOD         0       110       120  
METHOD         |         |         |  
METHOD T0085   KGQDFHFEERCSACHLNYEGSPWKGAKAPYtpftpevdakytfkfdemvkevkamhehykle  
METHOD d2cy3__ ---ENAFHTQCIDCHKALKKDKKP--TGPT................................  
METHOD   
METHOD   
METHOD           130                   140  
METHOD             |                     |  
METHOD T0085   gvfeGEPKFKFHDEfqasakpakkgk.  
METHOD d2cy3__ ....AC--GKCHTT.............   
METHOD   
METHOD   
MODEL 1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 2cy3 
ATOM      1  N   GLN    44      15.792  25.171  -0.339  1.00  0.00              
ATOM      2  CA  GLN    44      14.649  26.077  -0.234  1.00  0.00              
ATOM      3  C   GLN    44      14.922  27.576   0.025  1.00  0.00              
ATOM      4  O   GLN    44      15.365  27.964   1.118  1.00  0.00              
ATOM      5  N   LYS    45      14.687  28.432  -0.989  1.00  0.00              
ATOM      6  CA  LYS    45      14.904  29.873  -0.816  1.00  0.00              
ATOM      7  C   LYS    45      13.876  30.347   0.207  1.00  0.00              
ATOM      8  O   LYS    45      12.715  29.924   0.166  1.00  0.00              
ATOM      9  N   ALA    46      14.309  31.169   1.157  1.00  0.00              
ATOM     10  CA  ALA    46      13.411  31.667   2.191  1.00  0.00              
ATOM     11  C   ALA    46      13.578  33.165   2.378  1.00  0.00              
ATOM     12  O   ALA    46      14.597  33.625   2.878  1.00  0.00              
ATOM     13  N   LYS    47      12.578  33.943   1.956  1.00  0.00              
ATOM     14  CA  LYS    47      12.651  35.407   2.092  1.00  0.00              
ATOM     15  C   LYS    47      11.949  35.947   3.348  1.00  0.00              
ATOM     16  O   LYS    47      10.716  35.921   3.456  1.00  0.00              
ATOM     17  N   LEU    48      12.739  36.449   4.290  1.00  0.00              
ATOM     18  CA  LEU    48      12.195  37.009   5.528  1.00  0.00              
ATOM     19  C   LEU    48      11.240  38.202   5.338  1.00  0.00              
ATOM     20  O   LEU    48      10.247  38.324   6.066  1.00  0.00              
ATOM     21  N   ASP    49      11.523  39.076   4.370  1.00  0.00              
ATOM     22  CA  ASP    49      10.659  40.246   4.145  1.00  0.00              
ATOM     23  C   ASP    49       9.225  39.848   3.820  1.00  0.00              
ATOM     24  O   ASP    49       8.281  40.597   4.107  1.00  0.00              
ATOM     25  N   PRO    50       9.060  38.658   3.249  1.00  0.00              
ATOM     26  CA  PRO    50       7.739  38.165   2.894  1.00  0.00              
ATOM     27  C   PRO    50       7.001  37.609   4.117  1.00  0.00              
ATOM     28  O   PRO    50       5.820  37.283   4.041  1.00  0.00              
ATOM     29  N   ALA    51       7.694  37.549   5.251  1.00  0.00              
ATOM     30  CA  ALA    51       7.105  37.030   6.484  1.00  0.00              
ATOM     31  C   ALA    51       7.157  38.049   7.617  1.00  0.00              
ATOM     32  O   ALA    51       7.098  37.694   8.806  1.00  0.00              
ATOM     33  N   LYS    52       7.239  39.320   7.234  1.00  0.00              
ATOM     34  CA  LYS    52       7.317  40.419   8.187  1.00  0.00              
ATOM     35  C   LYS    52       6.076  40.520   9.072  1.00  0.00              
ATOM     36  O   LYS    52       6.142  41.058  10.173  1.00  0.00              
ATOM     37  N   ASP    53       4.954  39.999   8.586  1.00  0.00              
ATOM     38  CA  ASP    53       3.691  40.038   9.314  1.00  0.00              
ATOM     39  C   ASP    53       3.620  38.965  10.413  1.00  0.00              
ATOM     40  O   ASP    53       2.674  38.926  11.207  1.00  0.00              
ATOM     41  N   TYR    54       4.640  38.114  10.467  1.00  0.00              
ATOM     42  CA  TYR    54       4.716  37.053  11.468  1.00  0.00              
ATOM     43  C   TYR    54       5.798  37.454  12.461  1.00  0.00              
ATOM     44  O   TYR    54       6.892  37.840  12.058  1.00  0.00              
ATOM     45  N   ASP    59       5.496  37.394  13.753  1.00  0.00              
ATOM     46  CA  ASP    59       6.492  37.751  14.766  1.00  0.00              
ATOM     47  C   ASP    59       7.672  36.767  14.689  1.00  0.00              
ATOM     48  O   ASP    59       7.483  35.575  14.408  1.00  0.00              
ATOM     49  N   CYS    60       8.890  37.254  14.931  1.00  0.00              
ATOM     50  CA  CYS    60      10.071  36.385  14.860  1.00  0.00              
ATOM     51  C   CYS    60       9.906  35.164  15.749  1.00  0.00              
ATOM     52  O   CYS    60      10.213  34.035  15.343  1.00  0.00              
ATOM     53  N   VAL    61       9.419  35.401  16.963  1.00  0.00              
ATOM     54  CA  VAL    61       9.234  34.335  17.951  1.00  0.00              
ATOM     55  C   VAL    61       8.322  33.198  17.490  1.00  0.00              
ATOM     56  O   VAL    61       8.502  32.064  17.918  1.00  0.00              
ATOM     57  N   GLY    62       7.357  33.488  16.616  1.00  0.00              
ATOM     58  CA  GLY    62       6.444  32.430  16.170  1.00  0.00              
ATOM     59  C   GLY    62       7.203  31.294  15.491  1.00  0.00              
ATOM     60  O   GLY    62       6.918  30.123  15.743  1.00  0.00              
ATOM     61  N   CYS    63       8.179  31.637  14.655  1.00  0.00              
ATOM     62  CA  CYS    63       8.981  30.618  13.994  1.00  0.00              
ATOM     63  C   CYS    63      10.181  30.242  14.866  1.00  0.00              
ATOM     64  O   CYS    63      10.457  29.059  15.049  1.00  0.00              
ATOM     65  N   HIS    64      10.877  31.253  15.391  1.00  0.00              
ATOM     66  CA  HIS    64      12.046  31.062  16.257  1.00  0.00              
ATOM     67  C   HIS    64      11.492  30.947  17.671  1.00  0.00              
ATOM     68  O   HIS    64      11.758  31.767  18.559  1.00  0.00              
ATOM     69  N   VAL    65      10.730  29.879  17.852  1.00  0.00              
ATOM     70  CA  VAL    65      10.010  29.600  19.083  1.00  0.00              
ATOM     71  C   VAL    65      10.774  29.436  20.389  1.00  0.00              
ATOM     72  O   VAL    65      10.167  29.463  21.450  1.00  0.00              
ATOM     73  N   ASP    66      12.093  29.299  20.330  1.00  0.00              
ATOM     74  CA  ASP    66      12.883  29.144  21.546  1.00  0.00              
ATOM     75  C   ASP    66      13.719  30.381  21.828  1.00  0.00              
ATOM     76  O   ASP    66      14.613  30.364  22.686  1.00  0.00              
ATOM     77  N   GLY    67      13.415  31.453  21.100  1.00  0.00              
ATOM     78  CA  GLY    67      14.127  32.726  21.213  1.00  0.00              
ATOM     79  C   GLY    67      14.371  33.137  22.656  1.00  0.00              
ATOM     80  O   GLY    67      15.522  33.368  23.052  1.00  0.00              
ATOM     81  N   PHE    68      13.302  33.145  23.451  1.00  0.00              
ATOM     82  CA  PHE    68      13.400  33.549  24.847  1.00  0.00              
ATOM     83  C   PHE    68      14.345  32.682  25.670  1.00  0.00              
ATOM     84  O   PHE    68      15.206  33.206  26.381  1.00  0.00              
ATOM     85  N   GLY    69      14.176  31.369  25.577  1.00  0.00              
ATOM     86  CA  GLY    69      15.024  30.426  26.300  1.00  0.00              
ATOM     87  C   GLY    69      16.480  30.595  25.839  1.00  0.00              
ATOM     88  O   GLY    69      17.414  30.422  26.629  1.00  0.00              
ATOM     89  N   GLN    70      16.650  30.968  24.570  1.00  0.00              
ATOM     90  CA  GLN    70      17.969  31.185  23.967  1.00  0.00              
ATOM     91  C   GLN    70      18.487  32.605  24.208  1.00  0.00              
ATOM     92  O   GLN    70      19.441  33.050  23.561  1.00  0.00              
ATOM     93  N   LYS    71      17.819  33.341  25.093  1.00  0.00              
ATOM     94  CA  LYS    71      18.245  34.691  25.426  1.00  0.00              
ATOM     95  C   LYS    71      18.346  35.728  24.320  1.00  0.00              
ATOM     96  O   LYS    71      19.269  36.553  24.332  1.00  0.00              
ATOM     97  N   GLY    85      19.977  28.094  14.731  1.00  0.00              
ATOM     98  CA  GLY    85      19.512  27.317  13.586  1.00  0.00              
ATOM     99  C   GLY    85      18.598  26.209  14.112  1.00  0.00              
ATOM    100  O   GLY    85      18.842  25.662  15.181  1.00  0.00              
ATOM    101  N   VAL    86      17.534  25.906  13.374  1.00  0.00              
ATOM    102  CA  VAL    86      16.577  24.878  13.774  1.00  0.00              
ATOM    103  C   VAL    86      17.198  23.516  14.039  1.00  0.00              
ATOM    104  O   VAL    86      16.668  22.732  14.828  1.00  0.00              
ATOM    105  N   GLY    87      18.286  23.219  13.340  1.00  0.00              
ATOM    106  CA  GLY    87      18.940  21.921  13.460  1.00  0.00              
ATOM    107  C   GLY    87      20.096  21.836  14.454  1.00  0.00              
ATOM    108  O   GLY    87      20.715  20.773  14.594  1.00  0.00              
ATOM    109  N   CYS    88      20.367  22.921  15.169  1.00  0.00              
ATOM    110  CA  CYS    88      21.476  22.918  16.115  1.00  0.00              
ATOM    111  C   CYS    88      21.355  21.840  17.192  1.00  0.00              
ATOM    112  O   CYS    88      20.251  21.397  17.534  1.00  0.00              
ATOM    113  N   GLU    89      22.507  21.396  17.692  1.00  0.00              
ATOM    114  CA  GLU    89      22.575  20.359  18.719  1.00  0.00              
ATOM    115  C   GLU    89      21.598  20.624  19.864  1.00  0.00              
ATOM    116  O   GLU    89      21.576  21.711  20.447  1.00  0.00              
ATOM    117  N   SER    90      20.780  19.622  20.163  1.00  0.00              
ATOM    118  CA  SER    90      19.785  19.748  21.211  1.00  0.00              
ATOM    119  C   SER    90      18.443  20.190  20.658  1.00  0.00              
ATOM    120  O   SER    90      17.452  20.252  21.382  1.00  0.00              
ATOM    121  N   CYS    91      18.399  20.522  19.376  1.00  0.00              
ATOM    122  CA  CYS    91      17.147  20.950  18.763  1.00  0.00              
ATOM    123  C   CYS    91      16.699  19.908  17.735  1.00  0.00              
ATOM    124  O   CYS    91      16.687  18.711  18.038  1.00  0.00              
ATOM    125  N   HIS    92      16.320  20.323  16.533  1.00  0.00              
ATOM    126  CA  HIS    92      15.905  19.352  15.513  1.00  0.00              
ATOM    127  C   HIS    92      17.208  18.886  14.867  1.00  0.00              
ATOM    128  O   HIS    92      17.542  19.224  13.730  1.00  0.00              
ATOM    129  N   GLY    93      17.930  18.098  15.659  1.00  0.00              
ATOM    130  CA  GLY    93      19.267  17.603  15.352  1.00  0.00              
ATOM    131  C   GLY    93      19.405  16.235  14.667  1.00  0.00              
ATOM    132  O   GLY    93      20.509  15.837  14.300  1.00  0.00              
ATOM    133  N   PRO    94      18.315  15.502  14.510  1.00  0.00              
ATOM    134  CA  PRO    94      18.422  14.206  13.862  1.00  0.00              
ATOM    135  C   PRO    94      18.810  14.352  12.394  1.00  0.00              
ATOM    136  O   PRO    94      18.365  15.277  11.707  1.00  0.00              
ATOM    137  N   GLY    95      19.652  13.435  11.926  1.00  0.00              
ATOM    138  CA  GLY    95      20.089  13.412  10.537  1.00  0.00              
ATOM    139  C   GLY    95      19.381  12.244   9.841  1.00  0.00              
ATOM    140  O   GLY    95      19.631  11.952   8.668  1.00  0.00              
ATOM    141  N   ARG    96      18.471  11.599  10.565  1.00  0.00              
ATOM    142  CA  ARG    96      17.731  10.454  10.046  1.00  0.00              
ATOM    143  C   ARG    96      16.580  10.846   9.132  1.00  0.00              
ATOM    144  O   ARG    96      15.891  11.833   9.390  1.00  0.00              
ATOM    145  N   PHE    98      16.377  10.073   8.066  1.00  0.00              
ATOM    146  CA  PHE    98      15.295  10.348   7.128  1.00  0.00              
ATOM    147  C   PHE    98      13.959   9.905   7.717  1.00  0.00              
ATOM    148  O   PHE    98      13.907   9.012   8.571  1.00  0.00              
ATOM    149  N   ARG    99      12.887  10.538   7.261  1.00  0.00              
ATOM    150  CA  ARG    99      11.543  10.254   7.749  1.00  0.00              
ATOM    151  C   ARG    99      10.945   8.954   7.186  1.00  0.00              
ATOM    152  O   ARG    99      10.892   8.755   5.975  1.00  0.00              
ATOM    153  N   GLY   100      10.502   8.069   8.073  1.00  0.00              
ATOM    154  CA  GLY   100       9.915   6.795   7.663  1.00  0.00              
ATOM    155  C   GLY   100       8.687   6.536   8.525  1.00  0.00              
ATOM    156  O   GLY   100       8.239   7.424   9.249  1.00  0.00              
ATOM    157  N   ASP   101       8.149   5.320   8.462  1.00  0.00              
ATOM    158  CA  ASP   101       6.957   4.970   9.232  1.00  0.00              
ATOM    159  C   ASP   101       7.257   4.863  10.722  1.00  0.00              
ATOM    160  O   ASP   101       6.501   5.360  11.556  1.00  0.00              
ATOM    161  N   LYS   114       8.379   4.233  11.048  1.00  0.00              
ATOM    162  CA  LYS   114       8.767   4.035  12.438  1.00  0.00              
ATOM    163  C   LYS   114       8.988   5.333  13.216  1.00  0.00              
ATOM    164  O   LYS   114       8.627   5.423  14.391  1.00  0.00              
ATOM    165  N   LYS   115       9.549   6.343  12.560  1.00  0.00              
ATOM    166  CA  LYS   115       9.829   7.623  13.214  1.00  0.00              
ATOM    167  C   LYS   115       9.021   8.793  12.640  1.00  0.00              
ATOM    168  O   LYS   115       9.410   9.954  12.782  1.00  0.00              
ATOM    169  N   THR   116       7.870   8.491  12.053  1.00  0.00              
ATOM    170  CA  THR   116       7.020   9.517  11.445  1.00  0.00              
ATOM    171  C   THR   116       6.583  10.662  12.364  1.00  0.00              
ATOM    172  O   THR   116       6.323  11.772  11.890  1.00  0.00              
ATOM    173  N   PRO   117       6.489  10.380  13.664  1.00  0.00              
ATOM    174  CA  PRO   117       6.040  11.355  14.659  1.00  0.00              
ATOM    175  C   PRO   117       7.167  12.104  15.387  1.00  0.00              
ATOM    176  O   PRO   117       6.914  13.010  16.184  1.00  0.00              
ATOM    177  N   ARG   118       8.407  11.733  15.106  1.00  0.00              
ATOM    178  CA  ARG   118       9.550  12.357  15.750  1.00  0.00              
ATOM    179  C   ARG   118       9.788  13.823  15.304  1.00  0.00              
ATOM    180  O   ARG   118      10.249  14.096  14.191  1.00  0.00              
ATOM    181  N   LYS   119       9.526  14.748  16.219  1.00  0.00              
ATOM    182  CA  LYS   119       9.708  16.171  15.960  1.00  0.00              
ATOM    183  C   LYS   119      11.194  16.530  15.798  1.00  0.00              
ATOM    184  O   LYS   119      11.534  17.634  15.367  1.00  0.00              
ATOM    185  N   ASP   120      12.082  15.600  16.127  1.00  0.00              
ATOM    186  CA  ASP   120      13.515  15.861  15.977  1.00  0.00              
ATOM    187  C   ASP   120      13.956  15.793  14.506  1.00  0.00              
ATOM    188  O   ASP   120      15.038  16.274  14.141  1.00  0.00              
ATOM    189  N   LEU   121      13.120  15.175  13.674  1.00  0.00              
ATOM    190  CA  LEU   121      13.402  15.027  12.252  1.00  0.00              
ATOM    191  C   LEU   121      13.348  16.358  11.514  1.00  0.00              
ATOM    192  O   LEU   121      12.463  17.185  11.765  1.00  0.00              
ATOM    193  N   ALA   122      14.278  16.539  10.587  1.00  0.00              
ATOM    194  CA  ALA   122      14.348  17.771   9.810  1.00  0.00              
ATOM    195  C   ALA   122      13.068  17.982   9.011  1.00  0.00              
ATOM    196  O   ALA   122      12.428  19.029   9.108  1.00  0.00              
ATOM    197  N   ASP   127      12.642  16.943   8.307  1.00  0.00              
ATOM    198  CA  ASP   127      11.441  17.018   7.491  1.00  0.00              
ATOM    199  C   ASP   127      10.207  17.417   8.297  1.00  0.00              
ATOM    200  O   ASP   127       9.422  18.244   7.839  1.00  0.00              
ATOM    201  N   PHE   128      10.052  16.877   9.507  1.00  0.00              
ATOM    202  CA  PHE   128       8.884  17.219  10.324  1.00  0.00              
ATOM    203  C   PHE   128       8.946  18.656  10.845  1.00  0.00              
ATOM    204  O   PHE   128       7.977  19.411  10.725  1.00  0.00              
ATOM    205  N   HIS   129      10.098  19.051  11.375  1.00  0.00              
ATOM    206  CA  HIS   129      10.264  20.398  11.904  1.00  0.00              
ATOM    207  C   HIS   129       9.916  21.468  10.861  1.00  0.00              
ATOM    208  O   HIS   129       9.072  22.337  11.105  1.00  0.00              
ATOM    209  N   PHE   130      10.535  21.381   9.687  1.00  0.00              
ATOM    210  CA  PHE   130      10.293  22.364   8.627  1.00  0.00              
ATOM    211  C   PHE   130       8.927  22.275   7.951  1.00  0.00              
ATOM    212  O   PHE   130       8.294  23.303   7.676  1.00  0.00              
ATOM    213  N   GLU   131       8.456  21.063   7.681  1.00  0.00              
ATOM    214  CA  GLU   131       7.164  20.921   7.011  1.00  0.00              
ATOM    215  C   GLU   131       6.007  21.408   7.873  1.00  0.00              
ATOM    216  O   GLU   131       5.095  22.075   7.378  1.00  0.00              
ATOM    217  N   GLU   132       6.066  21.119   9.168  1.00  0.00              
ATOM    218  CA  GLU   132       5.008  21.552  10.070  1.00  0.00              
ATOM    219  C   GLU   132       4.969  23.088  10.115  1.00  0.00              
ATOM    220  O   GLU   132       3.896  23.687  10.080  1.00  0.00              
ATOM    221  N   ARG   133       6.141  23.724  10.119  1.00  0.00              
ATOM    222  CA  ARG   133       6.193  25.179  10.162  1.00  0.00              
ATOM    223  C   ARG   133       5.769  25.835   8.850  1.00  0.00              
ATOM    224  O   ARG   133       4.779  26.562   8.805  1.00  0.00              
ATOM    225  N   CYS   134       6.508  25.541   7.783  1.00  0.00              
ATOM    226  CA  CYS   134       6.259  26.121   6.464  1.00  0.00              
ATOM    227  C   CYS   134       4.927  25.795   5.793  1.00  0.00              
ATOM    228  O   CYS   134       4.147  26.699   5.473  1.00  0.00              
ATOM    229  N   SER   135       4.663  24.506   5.618  1.00  0.00              
ATOM    230  CA  SER   135       3.462  24.040   4.946  1.00  0.00              
ATOM    231  C   SER   135       2.140  24.373   5.625  1.00  0.00              
ATOM    232  O   SER   135       1.258  24.934   4.984  1.00  0.00              
ATOM    233  N   ALA   136       2.007  24.059   6.909  1.00  0.00              
ATOM    234  CA  ALA   136       0.749  24.308   7.623  1.00  0.00              
ATOM    235  C   ALA   136       0.221  25.727   7.468  1.00  0.00              
ATOM    236  O   ALA   136      -0.951  25.925   7.143  1.00  0.00              
ATOM    237  N   CYS   137       1.084  26.716   7.670  1.00  0.00              
ATOM    238  CA  CYS   137       0.633  28.087   7.542  1.00  0.00              
ATOM    239  C   CYS   137       0.187  28.403   6.119  1.00  0.00              
ATOM    240  O   CYS   137      -0.909  28.936   5.920  1.00  0.00              
ATOM    241  N   HIS   138       1.016  28.050   5.133  1.00  0.00              
ATOM    242  CA  HIS   138       0.691  28.311   3.729  1.00  0.00              
ATOM    243  C   HIS   138      -0.648  27.690   3.348  1.00  0.00              
ATOM    244  O   HIS   138      -1.510  28.363   2.776  1.00  0.00              
ATOM    245  N   LEU   139      -0.831  26.420   3.691  1.00  0.00              
ATOM    246  CA  LEU   139      -2.070  25.730   3.370  1.00  0.00              
ATOM    247  C   LEU   139      -3.283  26.424   4.005  1.00  0.00              
ATOM    248  O   LEU   139      -4.279  26.698   3.327  1.00  0.00              
ATOM    249  N   ASN   140      -3.171  26.771   5.282  1.00  0.00              
ATOM    250  CA  ASN   140      -4.269  27.431   5.981  1.00  0.00              
ATOM    251  C   ASN   140      -4.623  28.777   5.337  1.00  0.00              
ATOM    252  O   ASN   140      -5.799  29.122   5.211  1.00  0.00              
ATOM    253  N   TYR   141      -3.613  29.537   4.922  1.00  0.00              
ATOM    254  CA  TYR   141      -3.880  30.827   4.295  1.00  0.00              
ATOM    255  C   TYR   141      -4.547  30.643   2.937  1.00  0.00              
ATOM    256  O   TYR   141      -5.453  31.404   2.574  1.00  0.00              
ATOM    257  N   GLU   142      -4.125  29.610   2.207  1.00  0.00              
ATOM    258  CA  GLU   142      -4.702  29.318   0.898  1.00  0.00              
ATOM    259  C   GLU   142      -6.201  29.065   1.051  1.00  0.00              
ATOM    260  O   GLU   142      -7.012  29.568   0.267  1.00  0.00              
END
