REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0084AL201_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : TATSUYA-AKUTSU 
REMARK  ---------------------------------------------------------- 
TARGET T0084  
AUTHOR 7648-2940-6918  
REMARK  
REMARK t84 is a single alpha-helix which is a mirror image of 2zta (subunit a  
REMARK or b), which means that if 2zta (subunit a or b) is a right-handed  
REMARK helix, then t84 would have a left-handed conformation.  
REMARK  
METHOD We align a target sequence with structurally aligned sequences  
METHOD (i.e., multiple structure alignment), where a multiple structure  
METHOD alignment is computed from results of pairwise structure alignments  
METHOD for similar structures.   
METHOD Pairwise structure alignments are computed using a computer  
METHOD program STRALIGN [1] developed by the group-leader and they are  
METHOD combined into a multiple structure alignment using a method like  
METHOD center-star alignment.  
METHOD A simple dynamic programming procedure (Smith-Waterman like procedure)  
METHOD is used for computing an alignment between a target sequence and  
METHOD the aligned sequences.  
METHOD Finally, an alignment between a target and one of the aligned  
METHOD sequences (i.e., template sequence) is extracted and refined.  
METHOD Human knowledge is also used to find template structures and  
METHOD to refine alignments.  
METHOD  
METHOD [1] T. Akutsu: Protein structure alignment using dynamic programming  
METHOD and iterative alignment, IEICE Transactions on Information and Systems,  
METHOD vol. E79-D, pp. 1629--1636, 1996.  
METHOD  
METHOD Program code of STRALIGN is available via  
METHOD http://www.hgc.ims.u-tokyo.ac.jp/service/tooldoc/stralign/intro.html  
MODEL  1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 2zta_A 
ATOM      1  N   GLY     6      -0.649  23.935  -3.979  1.00  0.00              
ATOM      2  CA  GLY     6      -1.672  24.948  -4.007  1.00  0.00              
ATOM      3  C   GLY     6      -1.510  25.860  -5.212  1.00  0.00              
ATOM      4  O   GLY     6      -2.491  26.329  -5.797  1.00  0.00              
ATOM      5  N   VAL     7       1.411  22.161  -4.828  1.00  0.00              
ATOM      6  CA  VAL     7       0.184  21.709  -4.154  1.00  0.00              
ATOM      7  C   VAL     7      -0.970  22.690  -4.228  1.00  0.00              
ATOM      8  O   VAL     7      -2.127  22.345  -4.499  1.00  0.00              
ATOM      9  N   LEU     8       3.617  23.731  -5.731  1.00  0.00              
ATOM     10  CA  LEU     8       2.917  22.842  -6.655  1.00  0.00              
ATOM     11  C   LEU     8       1.523  22.471  -6.133  1.00  0.00              
ATOM     12  O   LEU     8       0.595  22.391  -6.906  1.00  0.00              
ATOM     13  N   LYS     9       4.293  24.835  -3.302  1.00  0.00              
ATOM     14  CA  LYS     9       3.872  25.752  -4.340  1.00  0.00              
ATOM     15  C   LYS     9       3.127  24.938  -5.434  1.00  0.00              
ATOM     16  O   LYS     9       2.077  25.324  -5.942  1.00  0.00              
ATOM     17  N   LYS    10       5.442  22.526  -2.316  1.00  0.00              
ATOM     18  CA  LYS    10       4.334  23.132  -1.617  1.00  0.00              
ATOM     19  C   LYS    10       3.522  24.052  -2.531  1.00  0.00              
ATOM     20  O   LYS    10       2.278  24.009  -2.547  1.00  0.00              
ATOM     21  N   LEU    11       7.652  22.156  -3.780  1.00  0.00              
ATOM     22  CA  LEU    11       6.581  21.183  -3.911  1.00  0.00              
ATOM     23  C   LEU    11       5.314  21.638  -3.285  1.00  0.00              
ATOM     24  O   LEU    11       4.262  21.231  -3.717  1.00  0.00              
ATOM     25  N   ARG    12       9.023  24.199  -2.915  1.00  0.00              
ATOM     26  CA  ARG    12       8.757  24.218  -4.310  1.00  0.00              
ATOM     27  C   ARG    12       7.617  23.282  -4.527  1.00  0.00              
ATOM     28  O   ARG    12       6.727  23.570  -5.329  1.00  0.00              
ATOM     29  N   ALA    13       9.339  23.476  -0.392  1.00  0.00              
ATOM     30  CA  ALA    13       8.696  24.740  -0.647  1.00  0.00              
ATOM     31  C   ALA    13       8.274  24.857  -2.089  1.00  0.00              
ATOM     32  O   ALA    13       7.348  25.560  -2.458  1.00  0.00              
ATOM     33  N   VAL    14      10.885  21.144  -0.615  1.00  0.00              
ATOM     34  CA  VAL    14       9.567  21.098   0.055  1.00  0.00              
ATOM     35  C   VAL    14       8.693  22.337  -0.258  1.00  0.00              
ATOM     36  O   VAL    14       7.471  22.279  -0.331  1.00  0.00              
ATOM     37  N   GLU    15      13.371  22.115  -1.777  1.00  0.00              
ATOM     38  CA  GLU    15      12.464  21.235  -2.495  1.00  0.00              
ATOM     39  C   GLU    15      11.028  21.230  -1.953  1.00  0.00              
ATOM     40  O   GLU    15      10.067  21.224  -2.727  1.00  0.00              
ATOM     41  N   ASN    16      14.350  23.531   0.462  1.00  0.00              
ATOM     42  CA  ASN    16      14.082  24.250  -0.792  1.00  0.00              
ATOM     43  C   ASN    16      13.093  23.412  -1.614  1.00  0.00              
ATOM     44  O   ASN    16      12.058  23.904  -2.029  1.00  0.00              
ATOM     45  N   GLU    17      14.762  21.483   2.300  1.00  0.00              
ATOM     46  CA  GLU    17      13.734  22.442   2.621  1.00  0.00              
ATOM     47  C   GLU    17      13.382  23.262   1.357  1.00  0.00              
ATOM     48  O   GLU    17      12.257  23.689   1.201  1.00  0.00              
ATOM     49  N   LEU    18      16.864  20.173   0.967  1.00  0.00              
ATOM     50  CA  LEU    18      15.562  19.515   1.148  1.00  0.00              
ATOM     51  C   LEU    18      14.448  20.469   1.537  1.00  0.00              
ATOM     52  O   LEU    18      13.294  20.298   1.171  1.00  0.00              
ATOM     53  N   HIS    19      18.860  22.130   1.184  1.00  0.00              
ATOM     54  CA  HIS    19      18.464  21.654  -0.143  1.00  0.00              
ATOM     55  C   HIS    19      17.085  21.019  -0.057  1.00  0.00              
ATOM     56  O   HIS    19      16.234  21.259  -0.906  1.00  0.00              
ATOM     57  N   TYR    20      19.061  22.299   4.002  1.00  0.00              
ATOM     58  CA  TYR    20      18.583  23.458   3.271  1.00  0.00              
ATOM     59  C   TYR    20      18.128  23.043   1.844  1.00  0.00              
ATOM     60  O   TYR    20      17.125  23.509   1.347  1.00  0.00              
ATOM     61  N   ASN    21      20.197  19.618   4.379  1.00  0.00              
ATOM     62  CA  ASN    21      18.920  20.029   4.916  1.00  0.00              
ATOM     63  C   ASN    21      18.309  21.239   4.222  1.00  0.00              
ATOM     64  O   ASN    21      17.156  21.194   3.870  1.00  0.00              
ATOM     65  N   LYS    22      22.683  19.813   3.160  1.00  0.00              
ATOM     66  CA  LYS    22      21.673  18.905   2.595  1.00  0.00              
ATOM     67  C   LYS    22      20.294  19.295   3.079  1.00  0.00              
ATOM     68  O   LYS    22      19.328  19.265   2.308  1.00  0.00              
ATOM     69  N   SER    23      23.646  21.917   4.934  1.00  0.00              
ATOM     70  CA  SER    23      23.635  22.121   3.513  1.00  0.00              
ATOM     71  C   SER    23      22.646  21.127   2.832  1.00  0.00              
ATOM     72  O   SER    23      21.785  21.529   2.057  1.00  0.00              
ATOM     73  N   LEU    24      23.765  20.415   7.323  1.00  0.00              
ATOM     74  CA  LEU    24      22.953  21.628   7.228  1.00  0.00              
ATOM     75  C   LEU    24      22.604  22.010   5.740  1.00  0.00              
ATOM     76  O   LEU    24      21.470  22.358   5.332  1.00  0.00              
ATOM     77  N   LEU    25      25.516  18.443   6.673  1.00  0.00              
ATOM     78  CA  LEU    25      24.139  18.084   6.963  1.00  0.00              
ATOM     79  C   LEU    25      23.279  19.279   6.875  1.00  0.00              
ATOM     80  O   LEU    25      22.186  19.189   6.384  1.00  0.00              
ATOM     81  N   GLU    26      27.889  19.970   6.297  1.00  0.00              
ATOM     82  CA  GLU    26      27.355  19.150   5.237  1.00  0.00              
ATOM     83  C   GLU    26      25.921  18.827   5.431  1.00  0.00              
ATOM     84  O   GLU    26      25.231  18.837   4.430  1.00  0.00              
ATOM     85  N   GLU    27      28.239  20.961   8.817  1.00  0.00              
ATOM     86  CA  GLU    27      28.153  21.876   7.674  1.00  0.00              
ATOM     87  C   GLU    27      27.513  21.208   6.465  1.00  0.00              
ATOM     88  O   GLU    27      26.657  21.739   5.763  1.00  0.00              
ATOM     89  N   VAL    28      28.592  18.513  10.326  1.00  0.00              
ATOM     90  CA  VAL    28      27.517  19.463  10.669  1.00  0.00              
ATOM     91  C   VAL    28      27.179  20.374   9.433  1.00  0.00              
ATOM     92  O   VAL    28      25.991  20.519   9.043  1.00  0.00              
ATOM     93  N   LYS    29      30.911  17.584   9.136  1.00  0.00              
ATOM     94  CA  LYS    29      29.714  16.773   9.066  1.00  0.00              
ATOM     95  C   LYS    29      28.481  17.604   9.342  1.00  0.00              
ATOM     96  O   LYS    29      27.466  17.458   8.679  1.00  0.00              
ATOM     97  N   ASP    30      32.702  19.646   9.977  1.00  0.00              
ATOM     98  CA  ASP    30      32.448  19.407   8.572  1.00  0.00              
ATOM     99  C   ASP    30      31.148  18.623   8.330  1.00  0.00              
ATOM    100  O   ASP    30      30.375  18.963   7.441  1.00  0.00              
ATOM    101  N   GLU    31      32.876  18.989  12.658  1.00  0.00              
ATOM    102  CA  GLU    31      32.395  20.303  12.225  1.00  0.00              
ATOM    103  C   GLU    31      31.875  20.301  10.802  1.00  0.00              
ATOM    104  O   GLU    31      30.804  20.880  10.473  1.00  0.00              
ATOM    105  N   LEU    32      33.995  16.437  12.613  1.00  0.00              
ATOM    106  CA  LEU    32      32.643  16.600  13.126  1.00  0.00              
ATOM    107  C   LEU    32      32.065  17.927  12.677  1.00  0.00              
ATOM    108  O   LEU    32      30.899  17.984  12.322  1.00  0.00              
ATOM    109  N   GLN    33      36.630  16.866  11.489  1.00  0.00              
ATOM    110  CA  GLN    33      35.671  15.982  10.839  1.00  0.00              
ATOM    111  C   GLN    33      34.203  16.207  11.309  1.00  0.00              
ATOM    112  O   GLN    33      33.250  16.103  10.533  1.00  0.00              
ATOM    113  N   LYS    34      37.334  18.677  13.666  1.00  0.00              
ATOM    114  CA  LYS    34      37.330  19.059  12.267  1.00  0.00              
ATOM    115  C   LYS    34      36.361  18.171  11.532  1.00  0.00              
ATOM    116  O   LYS    34      35.348  18.645  11.036  1.00  0.00              
ATOM    117  N   MET    35      37.447  16.947  15.901  1.00  0.00              
ATOM    118  CA  MET    35      36.661  18.155  15.840  1.00  0.00              
ATOM    119  C   MET    35      36.279  18.671  14.490  1.00  0.00              
ATOM    120  O   MET    35      35.112  19.078  14.259  1.00  0.00              
ATOM    121  N   ARG    36      37.494  13.382  15.829  1.00  0.00              
ATOM    122  CA  ARG    36      38.127  14.684  15.695  1.00  0.00              
ATOM    123  C   ARG    36      37.179  15.790  15.306  1.00  0.00              
ATOM    124  O   ARG    36      36.239  15.576  14.555  1.00  0.00              
END
