REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0084AL061_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : YANG-ANSUEI 
REMARK  ---------------------------------------------------------- 
TARGET T0084  
AUTHOR 5658-5421-3866  
REMARK prediction made by An-Suei Yang and Barry Honig  
REMARK Columbia University, Department of Biochemistry  
METHOD prediction made by PrISM, Protein Informatics System for Modeling  
METHOD protein structure database obtained by parsing PDB entries into domains  
METHOD sequence database obtained from SWISS-PROT  
METHOD 2nd prediction: neuro network algorithm in PrISM plus threading  
METHOD pairwise alignment: dynamic programming (DP) algorithm  
METHOD multiple alignment: progressive multi-aligning algorithm  
METHOD structure alignment: double DP algorithm  
METHOD plus rigid body superimposition  
METHOD sequence-structure alignment: variation of DP algorithm   
METHOD plus sequence-structure fitness function  
METHOD modeling: fragmental modeling based on a multiple-aligned parents  
MODEL  1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1ysa_C 
ATOM      1  N   GLY     6      13.704  18.593  16.763  1.00  0.00              
ATOM      2  CA  GLY     6      13.003  17.680  15.851  1.00  0.00              
ATOM      3  C   GLY     6      13.034  16.280  16.443  1.00  0.00              
ATOM      4  O   GLY     6      12.014  15.605  16.440  1.00  0.00              
ATOM      5  N   VAL     7      14.136  15.792  16.993  1.00  0.00              
ATOM      6  CA  VAL     7      14.148  14.506  17.708  1.00  0.00              
ATOM      7  C   VAL     7      13.310  14.467  18.997  1.00  0.00              
ATOM      8  O   VAL     7      12.735  13.448  19.375  1.00  0.00              
ATOM      9  N   LEU     8      13.217  15.583  19.716  1.00  0.00              
ATOM     10  CA  LEU     8      12.271  15.772  20.822  1.00  0.00              
ATOM     11  C   LEU     8      10.848  15.533  20.360  1.00  0.00              
ATOM     12  O   LEU     8      10.152  14.707  20.962  1.00  0.00              
ATOM     13  N   LYS     9      10.400  16.253  19.293  1.00  0.00              
ATOM     14  CA  LYS     9       9.052  16.046  18.772  1.00  0.00              
ATOM     15  C   LYS     9       8.715  14.650  18.305  1.00  0.00              
ATOM     16  O   LYS     9       7.710  14.124  18.801  1.00  0.00              
ATOM     17  N   LYS    10       9.517  14.020  17.435  1.00  0.00              
ATOM     18  CA  LYS    10       9.380  12.579  17.137  1.00  0.00              
ATOM     19  C   LYS    10       9.111  11.691  18.351  1.00  0.00              
ATOM     20  O   LYS    10       8.342  10.742  18.216  1.00  0.00              
ATOM     21  N   LEU    11       9.682  11.849  19.552  1.00  0.00              
ATOM     22  CA  LEU    11       9.172  11.014  20.651  1.00  0.00              
ATOM     23  C   LEU    11       7.911  11.522  21.370  1.00  0.00              
ATOM     24  O   LEU    11       7.099  10.746  21.893  1.00  0.00              
ATOM     25  N   ARG    12       7.702  12.837  21.495  1.00  0.00              
ATOM     26  CA  ARG    12       6.497  13.309  22.147  1.00  0.00              
ATOM     27  C   ARG    12       5.299  12.866  21.396  1.00  0.00              
ATOM     28  O   ARG    12       4.262  12.583  21.967  1.00  0.00              
ATOM     29  N   ALA    13       5.413  12.763  20.089  1.00  0.00              
ATOM     30  CA  ALA    13       4.338  12.155  19.344  1.00  0.00              
ATOM     31  C   ALA    13       4.214  10.647  19.562  1.00  0.00              
ATOM     32  O   ALA    13       3.136  10.120  19.850  1.00  0.00              
ATOM     33  N   VAL    14       5.277   9.860  19.471  1.00  0.00              
ATOM     34  CA  VAL    14       5.211   8.423  19.730  1.00  0.00              
ATOM     35  C   VAL    14       4.689   8.147  21.140  1.00  0.00              
ATOM     36  O   VAL    14       4.137   7.092  21.419  1.00  0.00              
ATOM     37  N   GLU    15       4.820   9.064  22.098  1.00  0.00              
ATOM     38  CA  GLU    15       4.089   8.924  23.367  1.00  0.00              
ATOM     39  C   GLU    15       2.557   9.023  23.185  1.00  0.00              
ATOM     40  O   GLU    15       1.793   8.214  23.729  1.00  0.00              
ATOM     41  N   ASN    16       2.084  10.002  22.382  1.00  0.00              
ATOM     42  CA  ASN    16       0.665  10.240  22.082  1.00  0.00              
ATOM     43  C   ASN    16       0.030   9.097  21.304  1.00  0.00              
ATOM     44  O   ASN    16      -0.918   8.533  21.839  1.00  0.00              
ATOM     45  N   GLU    17       0.495   8.669  20.103  1.00  0.00              
ATOM     46  CA  GLU    17       0.013   7.445  19.428  1.00  0.00              
ATOM     47  C   GLU    17      -0.044   6.338  20.481  1.00  0.00              
ATOM     48  O   GLU    17      -1.062   5.666  20.466  1.00  0.00              
ATOM     49  N   LEU    18       0.908   6.097  21.432  1.00  0.00              
ATOM     50  CA  LEU    18       0.728   5.111  22.517  1.00  0.00              
ATOM     51  C   LEU    18      -0.367   5.414  23.547  1.00  0.00              
ATOM     52  O   LEU    18      -1.001   4.503  24.076  1.00  0.00              
ATOM     53  N   HIS    19      -0.616   6.677  23.883  1.00  0.00              
ATOM     54  CA  HIS    19      -1.749   7.112  24.720  1.00  0.00              
ATOM     55  C   HIS    19      -3.114   6.729  24.105  1.00  0.00              
ATOM     56  O   HIS    19      -3.885   5.885  24.575  1.00  0.00              
ATOM     57  N   TYR    20      -3.433   7.350  22.956  1.00  0.00              
ATOM     58  CA  TYR    20      -4.750   7.224  22.295  1.00  0.00              
ATOM     59  C   TYR    20      -5.120   5.801  21.994  1.00  0.00              
ATOM     60  O   TYR    20      -6.288   5.450  22.079  1.00  0.00              
ATOM     61  N   ASN    21      -4.115   4.991  21.674  1.00  0.00              
ATOM     62  CA  ASN    21      -4.352   3.594  21.419  1.00  0.00              
ATOM     63  C   ASN    21      -4.797   2.937  22.701  1.00  0.00              
ATOM     64  O   ASN    21      -5.706   2.130  22.673  1.00  0.00              
ATOM     65  N   LYS    22      -4.249   3.246  23.860  1.00  0.00              
ATOM     66  CA  LYS    22      -4.855   2.724  25.075  1.00  0.00              
ATOM     67  C   LYS    22      -6.223   3.329  25.418  1.00  0.00              
ATOM     68  O   LYS    22      -7.108   2.606  25.864  1.00  0.00              
ATOM     69  N   SER    23      -6.542   4.610  25.240  1.00  0.00              
ATOM     70  CA  SER    23      -7.944   5.055  25.379  1.00  0.00              
ATOM     71  C   SER    23      -8.895   4.338  24.408  1.00  0.00              
ATOM     72  O   SER    23     -10.036   3.988  24.757  1.00  0.00              
ATOM     73  N   LEU    24      -8.488   4.104  23.145  1.00  0.00              
ATOM     74  CA  LEU    24      -9.278   3.363  22.178  1.00  0.00              
ATOM     75  C   LEU    24      -9.318   1.955  22.789  1.00  0.00              
ATOM     76  O   LEU    24     -10.461   1.644  23.155  1.00  0.00              
ATOM     77  N   LEU    25      -8.315   1.061  23.034  1.00  0.00              
ATOM     78  CA  LEU    25      -8.602  -0.219  23.718  1.00  0.00              
ATOM     79  C   LEU    25      -9.468  -0.156  25.018  1.00  0.00              
ATOM     80  O   LEU    25     -10.225  -1.100  25.321  1.00  0.00              
ATOM     81  N   GLU    26      -9.451   0.912  25.830  1.00  0.00              
ATOM     82  CA  GLU    26     -10.365   1.024  26.964  1.00  0.00              
ATOM     83  C   GLU    26     -11.793   1.027  26.463  1.00  0.00              
ATOM     84  O   GLU    26     -12.563   0.129  26.776  1.00  0.00              
ATOM     85  N   GLU    27     -12.173   2.009  25.621  1.00  0.00              
ATOM     86  CA  GLU    27     -13.577   2.156  25.146  1.00  0.00              
ATOM     87  C   GLU    27     -14.058   0.995  24.272  1.00  0.00              
ATOM     88  O   GLU    27     -15.190   0.509  24.385  1.00  0.00              
ATOM     89  N   VAL    28     -13.165   0.512  23.428  1.00  0.00              
ATOM     90  CA  VAL    28     -13.490  -0.676  22.703  1.00  0.00              
ATOM     91  C   VAL    28     -13.709  -1.916  23.576  1.00  0.00              
ATOM     92  O   VAL    28     -14.785  -2.472  23.413  1.00  0.00              
ATOM     93  N   LYS    29     -12.887  -2.428  24.514  1.00  0.00              
ATOM     94  CA  LYS    29     -13.301  -3.617  25.256  1.00  0.00              
ATOM     95  C   LYS    29     -14.532  -3.415  26.190  1.00  0.00              
ATOM     96  O   LYS    29     -15.303  -4.338  26.520  1.00  0.00              
ATOM     97  N   ASP    30     -14.806  -2.194  26.669  1.00  0.00              
ATOM     98  CA  ASP    30     -16.090  -1.904  27.336  1.00  0.00              
ATOM     99  C   ASP    30     -17.205  -2.092  26.320  1.00  0.00              
ATOM    100  O   ASP    30     -18.073  -2.914  26.536  1.00  0.00              
ATOM    101  N   GLU    31     -17.194  -1.418  25.176  1.00  0.00              
ATOM    102  CA  GLU    31     -18.214  -1.578  24.158  1.00  0.00              
ATOM    103  C   GLU    31     -18.521  -3.017  23.870  1.00  0.00              
ATOM    104  O   GLU    31     -19.694  -3.347  23.757  1.00  0.00              
ATOM    105  N   LEU    32     -17.496  -3.865  23.751  1.00  0.00              
ATOM    106  CA  LEU    32     -17.680  -5.289  23.511  1.00  0.00              
ATOM    107  C   LEU    32     -18.339  -5.709  24.762  1.00  0.00              
ATOM    108  O   LEU    32     -19.473  -6.111  24.589  1.00  0.00              
ATOM    109  N   GLN    33     -17.878  -5.588  26.003  1.00  0.00              
ATOM    110  CA  GLN    33     -18.624  -6.156  27.153  1.00  0.00              
ATOM    111  C   GLN    33     -20.115  -5.774  27.270  1.00  0.00              
ATOM    112  O   GLN    33     -20.923  -6.615  27.667  1.00  0.00              
ATOM    113  N   LYS    34     -20.515  -4.538  26.867  1.00  0.00              
ATOM    114  CA  LYS    34     -21.908  -4.069  26.763  1.00  0.00              
ATOM    115  C   LYS    34     -22.618  -4.866  25.697  1.00  0.00              
ATOM    116  O   LYS    34     -23.567  -5.542  26.084  1.00  0.00              
ATOM    117  N   MET    35     -22.286  -4.875  24.390  1.00  0.00              
ATOM    118  CA  MET    35     -23.098  -5.664  23.434  1.00  0.00              
ATOM    119  C   MET    35     -23.002  -7.180  23.687  1.00  0.00              
ATOM    120  O   MET    35     -23.916  -7.960  23.479  1.00  0.00              
ATOM    121  N   ARG    36     -21.903  -7.617  24.260  1.00  0.00              
ATOM    122  CA  ARG    36     -21.698  -8.980  24.746  1.00  0.00              
ATOM    123  C   ARG    36     -22.826  -9.372  25.694  1.00  0.00              
ATOM    124  O   ARG    36     -23.518 -10.382  25.542  1.00  0.00              
ATOM    125  N   GLN    37     -23.034  -8.533  26.701  1.00  0.00              
ATOM    126  CA  GLN    37     -24.091  -8.809  27.678  1.00  0.00              
ATOM    127  C   GLN    37     -25.466  -9.081  27.011  1.00  0.00              
ATOM    128  O   GLN    37     -26.049 -10.149  27.258  1.00  0.00              
END
