PFRMAT SS 
TARGET T0083 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t83.t98_6.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 4.50348 
METHOD 
MODEL 1 
M C 0.63 
I C 0.56 
Q H 0.48 
S H 0.63 
Q H 0.58 
I H 0.60 
N H 0.66 
R H 0.78 
N H 0.71 
I H 0.73 
R H 0.77 
L H 0.82 
D H 0.73 
L H 0.80 
A H 0.93 
D H 0.97 
A H 0.97 
I H 0.97 
L H 0.95 
L H 0.92 
S H 0.88 
K H 0.71 
A H 0.54 
K C 0.63 
K C 0.85 
D C 0.82 
L C 0.63 
S C 0.52 
F H 0.89 
A H 0.97 
E H 0.98 
I H 0.98 
A H 0.97 
D H 0.94 
G H 0.84 
T C 0.57 
G C 0.69 
L H 0.47 
A H 0.63 
E H 0.82 
A H 0.91 
F H 0.93 
V H 0.96 
T H 0.97 
A H 0.95 
A H 0.93 
L H 0.83 
L H 0.51 
G C 0.54 
Q C 0.60 
Q C 0.48 
A C 0.58 
L C 0.74 
P C 0.61 
A H 0.77 
D H 0.92 
A H 0.96 
A H 0.98 
R H 0.99 
L H 0.98 
V H 0.98 
G H 0.96 
A H 0.91 
K H 0.75 
L C 0.49 
D C 0.67 
L C 0.67 
D C 0.66 
E H 0.77 
D H 0.82 
S H 0.80 
I H 0.80 
L H 0.77 
L H 0.70 
L H 0.51 
Q C 0.63 
M C 0.71 
I C 0.87 
P C 0.86 
L C 0.60 
R C 0.60 
G C 0.73 
C C 0.74 
I C 0.75 
D C 0.90 
D C 0.85 
R C 0.76 
I C 0.85 
P C 0.87 
T C 0.87 
D C 0.86 
P C 0.68 
T H 0.47 
M H 0.61 
Y H 0.75 
R H 0.80 
F H 0.90 
Y H 0.94 
E H 0.97 
M H 0.98 
L H 0.98 
Q H 0.96 
V H 0.91 
Y H 0.81 
G H 0.87 
T H 0.91 
T H 0.87 
L H 0.96 
K H 0.97 
A H 0.97 
L H 0.94 
V H 0.92 
H H 0.90 
E H 0.85 
K H 0.62 
F C 0.69 
G C 0.85 
D C 0.84 
G C 0.64 
I E 0.61 
I E 0.75 
S E 0.84 
A E 0.87 
I E 0.80 
N E 0.70 
F E 0.60 
K E 0.56 
L E 0.54 
D E 0.51 
V E 0.45 
K C 0.38 
K C 0.40 
V C 0.52 
A C 0.72 
D C 0.90 
P C 0.88 
E C 0.88 
G C 0.94 
G C 0.94 
E C 0.72 
R E 0.73 
A E 0.92 
V E 0.96 
I E 0.95 
T E 0.92 
L E 0.75 
D C 0.55 
G E 0.51 
K E 0.70 
Y E 0.84 
L E 0.83 
P E 0.70 
T E 0.49 
K C 0.74 
P C 0.77 
F C 0.79 
END 
