PFRMAT SS 
TARGET T0082 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t82.t98_6.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 13.77 
METHOD 
MODEL 1 
F C 0.87 
D C 0.77 
S E 0.57 
F E 0.83 
W E 0.92 
F E 0.91 
V E 0.86 
Q E 0.73 
Q E 0.47 
W C 0.72 
P C 0.80 
P C 0.66 
A C 0.52 
V E 0.45 
C C 0.47 
S C 0.52 
F C 0.69 
Q C 0.88 
K C 0.91 
S C 0.84 
G C 0.70 
S C 0.61 
C C 0.62 
P C 0.76 
G C 0.87 
S C 0.92 
G C 0.91 
L C 0.91 
R C 0.82 
T C 0.66 
F E 0.61 
T E 0.84 
I E 0.84 
H E 0.75 
G E 0.67 
L E 0.61 
W C 0.60 
P C 0.77 
Q C 0.76 
Q C 0.80 
S C 0.94 
G C 0.92 
T C 0.75 
S C 0.53 
L E 0.48 
T E 0.43 
N C 0.56 
C C 0.83 
P C 0.89 
G C 0.89 
S C 0.93 
P C 0.85 
F C 0.67 
D C 0.56 
I C 0.48 
T C 0.52 
K C 0.60 
I C 0.58 
S C 0.54 
H C 0.50 
L H 0.65 
Q H 0.82 
S H 0.91 
Q H 0.86 
L H 0.93 
N H 0.93 
T H 0.89 
L H 0.53 
W C 0.50 
P C 0.56 
N H 0.67 
V H 0.53 
L C 0.64 
R C 0.74 
A C 0.82 
N C 0.95 
N C 0.86 
Q C 0.69 
Q C 0.50 
F H 0.47 
W H 0.68 
S H 0.87 
H H 0.90 
E H 0.84 
W H 0.84 
T H 0.74 
K H 0.54 
H C 0.62 
G C 0.65 
T C 0.61 
C C 0.55 
S C 0.55 
E C 0.57 
S C 0.61 
T C 0.57 
F C 0.52 
N H 0.51 
Q H 0.75 
A H 0.83 
A H 0.86 
Y H 0.85 
F H 0.91 
K H 0.91 
L H 0.84 
A H 0.86 
V H 0.87 
D H 0.74 
M H 0.73 
R H 0.57 
N C 0.51 
N H 0.57 
Y H 0.62 
D H 0.54 
I H 0.89 
I H 0.94 
G H 0.95 
A H 0.94 
L H 0.87 
R H 0.70 
P H 0.50 
H C 0.84 
A C 0.85 
A C 0.71 
G C 0.73 
P C 0.82 
N C 0.84 
G C 0.89 
R C 0.88 
T C 0.72 
K C 0.57 
S C 0.57 
R H 0.90 
Q H 0.98 
A H 0.99 
I H 0.99 
K H 1.00 
G H 1.00 
F H 0.99 
L H 0.99 
K H 0.98 
A H 0.96 
K H 0.86 
F C 0.62 
G C 0.87 
K C 0.78 
F C 0.83 
P C 0.85 
G C 0.61 
L C 0.44 
R C 0.49 
C C 0.56 
R C 0.61 
T C 0.74 
D C 0.78 
P C 0.73 
Q C 0.69 
T C 0.80 
K C 0.80 
V C 0.56 
S C 0.47 
Y C 0.36 
L H 0.48 
V H 0.41 
Q E 0.58 
V E 0.66 
V E 0.70 
A E 0.76 
C E 0.71 
F E 0.46 
A C 0.77 
Q C 0.86 
D C 0.86 
G C 0.75 
S C 0.70 
T C 0.54 
L E 0.53 
I E 0.58 
D C 0.48 
C C 0.73 
T C 0.80 
R C 0.74 
D C 0.72 
T C 0.70 
C C 0.71 
G C 0.78 
A C 0.87 
N C 0.82 
F C 0.80 
I C 0.87 
F C 0.86 
END 
