PFRMAT SS 
TARGET T0081 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t81.t98_6.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 2.69035 
METHOD 
MODEL 1 
M C 0.58 
E C 0.52 
L C 0.54 
T C 0.56 
T C 0.49 
R C 0.47 
T C 0.48 
L H 0.47 
P H 0.56 
A H 0.70 
R H 0.65 
K H 0.43 
H E 0.40 
I E 0.68 
A E 0.80 
L E 0.80 
V E 0.71 
A E 0.47 
H C 0.59 
D C 0.54 
H C 0.51 
C H 0.56 
K H 0.77 
Q H 0.84 
M H 0.86 
L H 0.92 
M H 0.96 
S H 0.96 
W H 0.95 
V H 0.98 
E H 0.98 
R H 0.97 
H H 0.97 
Q H 0.97 
P H 0.97 
L H 0.95 
L H 0.93 
E H 0.85 
Q H 0.71 
H H 0.44 
V E 0.52 
L E 0.71 
Y E 0.81 
A E 0.71 
T C 0.57 
G C 0.79 
T C 0.80 
T C 0.58 
G C 0.39 
N H 0.40 
L E 0.42 
I H 0.42 
S H 0.42 
R C 0.46 
A C 0.69 
T C 0.85 
G C 0.83 
M C 0.66 
N E 0.48 
V E 0.55 
N E 0.49 
A E 0.45 
M C 0.46 
L C 0.56 
S C 0.72 
G C 0.85 
P C 0.82 
M C 0.76 
G C 0.93 
G C 0.93 
D C 0.88 
Q C 0.57 
Q C 0.49 
V C 0.41 
G H 0.44 
A H 0.51 
L H 0.44 
I H 0.48 
S H 0.58 
E C 0.43 
G C 0.76 
K C 0.74 
I C 0.54 
D E 0.73 
V E 0.91 
L E 0.95 
I E 0.93 
F E 0.86 
F E 0.66 
W C 0.65 
D C 0.86 
P C 0.70 
L C 0.60 
N C 0.64 
A C 0.71 
V C 0.91 
P C 0.93 
H C 0.87 
D C 0.76 
P C 0.52 
D H 0.57 
V H 0.94 
K H 0.97 
A H 0.97 
L H 0.97 
L H 0.95 
R H 0.88 
L H 0.80 
A H 0.53 
T H 0.49 
V C 0.47 
W C 0.62 
N C 0.57 
I C 0.55 
P C 0.59 
V E 0.44 
A E 0.45 
T C 0.44 
N C 0.62 
V H 0.52 
A H 0.69 
T H 0.82 
A H 0.93 
D H 0.93 
F H 0.91 
I H 0.86 
I H 0.80 
Q H 0.61 
S H 0.50 
P C 0.50 
H C 0.64 
F C 0.59 
N C 0.62 
D C 0.60 
A C 0.60 
V C 0.54 
D C 0.51 
I C 0.45 
L C 0.45 
I C 0.47 
P C 0.54 
D C 0.61 
Y C 0.48 
Q H 0.71 
R H 0.77 
Y H 0.66 
L H 0.68 
A H 0.66 
D H 0.62 
R H 0.47 
L C 0.65 
K C 0.82 
END 
