REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0080AL277_2_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : DEERFIELD 
REMARK  ---------------------------------------------------------- 
TARGET T0080  
AUTHOR 8120-3487-1357  
REMARK Matrix Used: BS_30_25%   
REMARK Alignment Method Used: 1onr_a: Quasi-Global Dynamic Programming  
REMARK Alignment Method Used: 1ses_b: Local Dynamic Programming  
METHOD Sequence-Structure alignment based on the environments  
METHOD published in: Deerfield, Holland-Minkley, Geigel, and   
METHOD Nicholas 1997. "Classification of the Environment of   
METHOD Protein Residues" J. Prot. Chem. 16:441-446.  
METHOD   
METHOD This test uses our latest (unpublished) environment   
METHOD classifications and extentions.  
MODEL  2  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1onr_A 
ATOM      1  N   LYS    80      58.028  -3.136  21.669  1.00  0.00              
ATOM      2  CA  LYS    80      58.604  -3.612  22.913  1.00  0.00              
ATOM      3  C   LYS    80      57.709  -4.655  23.561  1.00  0.00              
ATOM      4  O   LYS    80      56.514  -4.745  23.267  1.00  0.00              
ATOM      5  N   GLY    81      58.309  -5.432  24.456  1.00  0.00              
ATOM      6  CA  GLY    81      57.613  -6.486  25.180  1.00  0.00              
ATOM      7  C   GLY    81      56.518  -5.927  26.085  1.00  0.00              
ATOM      8  O   GLY    81      56.716  -4.922  26.776  1.00  0.00              
ATOM      9  N   HIS    82      55.369  -6.584  26.074  1.00  0.00              
ATOM     10  CA  HIS    82      54.238  -6.175  26.896  1.00  0.00              
ATOM     11  C   HIS    82      54.435  -6.648  28.324  1.00  0.00              
ATOM     12  O   HIS    82      54.989  -7.720  28.567  1.00  0.00              
ATOM     13  N   LEU    83      53.994  -5.847  29.300  1.00  0.00              
ATOM     14  CA  LEU    83      54.130  -6.194  30.714  1.00  0.00              
ATOM     15  C   LEU    83      53.097  -7.234  31.093  1.00  0.00              
ATOM     16  O   LEU    83      52.357  -7.723  30.247  1.00  0.00              
ATOM     17  N   THR    84      53.051  -7.583  32.368  1.00  0.00              
ATOM     18  CA  THR    84      52.067  -8.552  32.816  1.00  0.00              
ATOM     19  C   THR    84      50.725  -7.827  32.803  1.00  0.00              
ATOM     20  O   THR    84      50.682  -6.601  32.867  1.00  0.00              
ATOM     21  N   ARG    85      49.636  -8.576  32.711  1.00  0.00              
ATOM     22  CA  ARG    85      48.320  -7.956  32.696  1.00  0.00              
ATOM     23  C   ARG    85      47.967  -7.324  34.039  1.00  0.00              
ATOM     24  O   ARG    85      48.278  -7.865  35.097  1.00  0.00              
ATOM     25  N   LEU    86      47.322  -6.167  33.983  1.00  0.00              
ATOM     26  CA  LEU    86      46.915  -5.463  35.185  1.00  0.00              
ATOM     27  C   LEU    86      45.697  -6.207  35.753  1.00  0.00              
ATOM     28  O   LEU    86      44.855  -6.717  35.002  1.00  0.00              
ATOM     29  N   GLY    87      45.646  -6.345  37.077  1.00  0.00              
ATOM     30  CA  GLY    87      44.532  -7.018  37.726  1.00  0.00              
ATOM     31  C   GLY    87      43.487  -5.988  38.092  1.00  0.00              
ATOM     32  O   GLY    87      43.727  -4.783  38.019  1.00  0.00              
ATOM     33  N   LEU    88      42.326  -6.469  38.513  1.00  0.00              
ATOM     34  CA  LEU    88      41.237  -5.592  38.896  1.00  0.00              
ATOM     35  C   LEU    88      41.633  -4.635  40.020  1.00  0.00              
ATOM     36  O   LEU    88      41.327  -3.448  39.971  1.00  0.00              
ATOM     37  N   GLU    89      42.300  -5.168  41.041  1.00  0.00              
ATOM     38  CA  GLU    89      42.744  -4.368  42.186  1.00  0.00              
ATOM     39  C   GLU    89      43.658  -3.240  41.738  1.00  0.00              
ATOM     40  O   GLU    89      43.481  -2.091  42.150  1.00  0.00              
ATOM     41  N   PHE    90      44.636  -3.563  40.893  1.00  0.00              
ATOM     42  CA  PHE    90      45.563  -2.557  40.394  1.00  0.00              
ATOM     43  C   PHE    90      44.818  -1.561  39.514  1.00  0.00              
ATOM     44  O   PHE    90      45.079  -0.363  39.573  1.00  0.00              
ATOM     45  N   PHE    91      43.894  -2.054  38.694  1.00  0.00              
ATOM     46  CA  PHE    91      43.106  -1.176  37.833  1.00  0.00              
ATOM     47  C   PHE    91      42.314  -0.182  38.683  1.00  0.00              
ATOM     48  O   PHE    91      42.317   1.023  38.423  1.00  0.00              
ATOM     49  N   ASP    92      41.609  -0.700  39.683  1.00  0.00              
ATOM     50  CA  ASP    92      40.816   0.152  40.556  1.00  0.00              
ATOM     51  C   ASP    92      41.697   1.171  41.279  1.00  0.00              
ATOM     52  O   ASP    92      41.356   2.360  41.339  1.00  0.00              
ATOM     53  N   GLN    93      42.840   0.723  41.794  1.00  0.00              
ATOM     54  CA  GLN    93      43.761   1.621  42.486  1.00  0.00              
ATOM     55  C   GLN    93      44.221   2.760  41.560  1.00  0.00              
ATOM     56  O   GLN    93      44.106   3.950  41.883  1.00  0.00              
ATOM     57  N   PRO    94      44.745   2.380  40.401  1.00  0.00              
ATOM     58  CA  PRO    94      45.242   3.345  39.429  1.00  0.00              
ATOM     59  C   PRO    94      44.171   4.242  38.831  1.00  0.00              
ATOM     60  O   PRO    94      44.398   5.436  38.633  1.00  0.00              
ATOM     61  N   ALA    95      43.227   6.881  41.311  1.00  0.00              
ATOM     62  CA  ALA    95      44.295   7.809  41.640  1.00  0.00              
ATOM     63  C   ALA    95      44.099   9.071  40.797  1.00  0.00              
ATOM     64  O   ALA    95      44.691  10.106  41.081  1.00  0.00              
ATOM     65  N   VAL    96      43.276   8.961  39.753  1.00  0.00              
ATOM     66  CA  VAL    96      43.008  10.057  38.822  1.00  0.00              
ATOM     67  C   VAL    96      41.651  10.699  39.112  1.00  0.00              
ATOM     68  O   VAL    96      40.622  10.214  38.650  1.00  0.00              
ATOM     69  N   PRO    97      41.637  11.846  39.802  1.00  0.00              
ATOM     70  CA  PRO    97      40.414  12.574  40.163  1.00  0.00              
ATOM     71  C   PRO    97      39.507  12.887  38.974  1.00  0.00              
ATOM     72  O   PRO    97      38.288  12.747  39.057  1.00  0.00              
ATOM     73  N   LEU    98      40.110  13.311  37.874  1.00  0.00              
ATOM     74  CA  LEU    98      39.364  13.637  36.665  1.00  0.00              
ATOM     75  C   LEU    98      38.678  12.391  36.117  1.00  0.00              
ATOM     76  O   LEU    98      37.463  12.387  35.897  1.00  0.00              
ATOM     77  N   ALA    99      39.440  11.312  35.980  1.00  0.00              
ATOM     78  CA  ALA    99      38.895  10.068  35.449  1.00  0.00              
ATOM     79  C   ALA    99      37.758   9.555  36.324  1.00  0.00              
ATOM     80  O   ALA    99      36.752   9.039  35.819  1.00  0.00              
ATOM     81  N   ARG   100      37.936   9.663  37.639  1.00  0.00              
ATOM     82  CA  ARG   100      36.927   9.214  38.586  1.00  0.00              
ATOM     83  C   ARG   100      35.617   9.953  38.338  1.00  0.00              
ATOM     84  O   ARG   100      34.573   9.325  38.166  1.00  0.00              
ATOM     85  N   ALA   101      35.671  11.281  38.283  1.00  0.00              
ATOM     86  CA  ALA   101      34.478  12.076  38.051  1.00  0.00              
ATOM     87  C   ALA   101      33.844  11.822  36.690  1.00  0.00              
ATOM     88  O   ALA   101      32.665  11.473  36.592  1.00  0.00              
ATOM     89  N   PHE   102      34.640  12.007  35.644  1.00  0.00              
ATOM     90  CA  PHE   102      34.167  11.859  34.272  1.00  0.00              
ATOM     91  C   PHE   102      33.583  10.518  33.847  1.00  0.00              
ATOM     92  O   PHE   102      32.583  10.482  33.127  1.00  0.00              
ATOM     93  N   LEU   103      34.193   9.416  34.261  1.00  0.00              
ATOM     94  CA  LEU   103      33.647   8.118  33.911  1.00  0.00              
ATOM     95  C   LEU   103      32.249   7.983  34.520  1.00  0.00              
ATOM     96  O   LEU   103      31.281   7.710  33.809  1.00  0.00              
ATOM     97  N   GLY   104      32.141   8.193  35.832  1.00  0.00              
ATOM     98  CA  GLY   104      30.849   8.075  36.513  1.00  0.00              
ATOM     99  C   GLY   104      29.800   9.016  35.936  1.00  0.00              
ATOM    100  O   GLY   104      28.642   8.638  35.747  1.00  0.00              
ATOM    101  N   GLN   105      30.202  10.254  35.674  1.00  0.00              
ATOM    102  CA  GLN   105      29.301  11.254  35.123  1.00  0.00              
ATOM    103  C   GLN   105      28.818  10.908  33.710  1.00  0.00              
ATOM    104  O   GLN   105      27.639  11.072  33.391  1.00  0.00              
ATOM    105  N   VAL   106      29.733  10.451  32.861  1.00  0.00              
ATOM    106  CA  VAL   106      29.369  10.103  31.497  1.00  0.00              
ATOM    107  C   VAL   106      28.318   9.017  31.470  1.00  0.00              
ATOM    108  O   VAL   106      27.371   9.060  30.678  1.00  0.00              
ATOM    109  N   LEU   107      28.486   8.023  32.331  1.00  0.00              
ATOM    110  CA  LEU   107      27.532   6.926  32.415  1.00  0.00              
ATOM    111  C   LEU   107      26.166   7.445  32.870  1.00  0.00              
ATOM    112  O   LEU   107      25.142   7.058  32.313  1.00  0.00              
ATOM    113  N   VAL   108      26.150   8.324  33.876  1.00  0.00              
ATOM    114  CA  VAL   108      24.893   8.887  34.376  1.00  0.00              
ATOM    115  C   VAL   108      24.129   9.609  33.274  1.00  0.00              
ATOM    116  O   VAL   108      22.939   9.368  33.076  1.00  0.00              
ATOM    117  N   ARG   109      24.815  10.503  32.567  1.00  0.00              
ATOM    118  CA  ARG   109      24.199  11.273  31.488  1.00  0.00              
ATOM    119  C   ARG   109      23.619  10.376  30.388  1.00  0.00              
ATOM    120  O   ARG   109      22.489  10.581  29.944  1.00  0.00              
ATOM    121  N   ARG   110      24.389   9.385  29.952  1.00  0.00              
ATOM    122  CA  ARG   110      23.919   8.459  28.933  1.00  0.00              
ATOM    123  C   ARG   110      22.694   7.690  29.426  1.00  0.00              
ATOM    124  O   ARG   110      21.784   7.397  28.648  1.00  0.00              
ATOM    125  N   LEU   111      22.670   7.358  30.717  1.00  0.00              
ATOM    126  CA  LEU   111      21.546   6.614  31.288  1.00  0.00              
ATOM    127  C   LEU   111      20.278   7.466  31.248  1.00  0.00              
ATOM    128  O   LEU   111      19.195   6.988  30.898  1.00  0.00              
ATOM    129  N   PRO   112      20.422   8.738  31.593  1.00  0.00              
ATOM    130  CA  PRO   112      19.306   9.671  31.578  1.00  0.00              
ATOM    131  C   PRO   112      18.736   9.791  30.159  1.00  0.00              
ATOM    132  O   PRO   112      17.520   9.716  29.965  1.00  0.00              
ATOM    133  N   ASN   113      19.613   9.958  29.168  1.00  0.00              
ATOM    134  CA  ASN   113      19.173  10.077  27.779  1.00  0.00              
ATOM    135  C   ASN   113      18.465   8.815  27.315  1.00  0.00              
ATOM    136  O   ASN   113      17.515   8.884  26.540  1.00  0.00              
ATOM    137  N   GLY   114      18.894   7.669  27.826  1.00  0.00              
ATOM    138  CA  GLY   114      18.259   6.407  27.476  1.00  0.00              
ATOM    139  C   GLY   114      16.813   6.458  27.962  1.00  0.00              
ATOM    140  O   GLY   114      15.890   6.094  27.239  1.00  0.00              
ATOM    141  N   THR   115      16.626   6.914  29.198  1.00  0.00              
ATOM    142  CA  THR   115      15.300   7.014  29.798  1.00  0.00              
ATOM    143  C   THR   115      14.417   8.010  29.063  1.00  0.00              
ATOM    144  O   THR   115      13.223   7.761  28.869  1.00  0.00              
ATOM    145  N   GLU   116      15.004   9.124  28.638  1.00  0.00              
ATOM    146  CA  GLU   116      14.248  10.121  27.901  1.00  0.00              
ATOM    147  C   GLU   116      13.752   9.531  26.580  1.00  0.00              
ATOM    148  O   GLU   116      12.622   9.798  26.162  1.00  0.00              
ATOM    149  N   LEU   117      14.579   8.698  25.949  1.00  0.00              
ATOM    150  CA  LEU   117      14.200   8.064  24.687  1.00  0.00              
ATOM    151  C   LEU   117      13.031   7.117  24.952  1.00  0.00              
ATOM    152  O   LEU   117      12.023   7.141  24.238  1.00  0.00              
ATOM    153  N   ARG   118      13.166   6.287  25.988  1.00  0.00              
ATOM    154  CA  ARG   118      12.113   5.342  26.356  1.00  0.00              
ATOM    155  C   ARG   118      10.801   6.072  26.648  1.00  0.00              
ATOM    156  O   ARG   118       9.720   5.584  26.306  1.00  0.00              
ATOM    157  N   GLY   119      10.911   7.243  27.269  1.00  0.00              
ATOM    158  CA  GLY   119       9.757   8.076  27.589  1.00  0.00              
ATOM    159  C   GLY   119       9.042   8.368  26.269  1.00  0.00              
ATOM    160  O   GLY   119       7.870   8.031  26.086  1.00  0.00              
ATOM    161  N   ARG   120       9.797   8.935  25.332  1.00  0.00              
ATOM    162  CA  ARG   120       9.286   9.295  24.020  1.00  0.00              
ATOM    163  C   ARG   120       8.605   8.114  23.332  1.00  0.00              
ATOM    164  O   ARG   120       7.427   8.190  22.966  1.00  0.00              
ATOM    165  N   ILE   121       9.329   7.009  23.198  1.00  0.00              
ATOM    166  CA  ILE   121       8.792   5.815  22.557  1.00  0.00              
ATOM    167  C   ILE   121       7.517   5.347  23.246  1.00  0.00              
ATOM    168  O   ILE   121       6.538   4.994  22.586  1.00  0.00              
ATOM    169  N   VAL   122       7.517   5.379  24.575  1.00  0.00              
ATOM    170  CA  VAL   122       6.356   4.935  25.322  1.00  0.00              
ATOM    171  C   VAL   122       5.078   5.646  24.929  1.00  0.00              
ATOM    172  O   VAL   122       4.032   5.014  24.775  1.00  0.00              
ATOM    173  N   GLU   123       5.162   6.956  24.727  1.00  0.00              
ATOM    174  CA  GLU   123       3.994   7.742  24.366  1.00  0.00              
ATOM    175  C   GLU   123       3.448   7.407  22.980  1.00  0.00              
ATOM    176  O   GLU   123       2.355   7.839  22.627  1.00  0.00              
ATOM    177  N   THR   124       4.192   6.627  22.201  1.00  0.00              
ATOM    178  CA  THR   124       3.753   6.267  20.855  1.00  0.00              
ATOM    179  C   THR   124       3.188   4.858  20.748  1.00  0.00              
ATOM    180  O   THR   124       2.815   4.422  19.658  1.00  0.00              
ATOM    181  N   GLU   125       3.160   4.130  21.857  1.00  0.00              
ATOM    182  CA  GLU   125       2.633   2.771  21.836  1.00  0.00              
ATOM    183  C   GLU   125       1.154   2.782  22.216  1.00  0.00              
ATOM    184  O   GLU   125       0.330   2.281  21.414  1.00  0.00              
END
