PFRMAT TS 
TARGET T0079 
AUTHOR 9098-1319-9502 
REMARK Enoch S. Huang and Jay W. Ponder 
REMARK Internal code: mara-HTH.pdb 
METHOD 
METHOD Homology model from 1r69 helix turn helix motif, aligned by 
METHOD manual intervention.  Side-chains built with the program SCWRL 
METHOD (Bower MJ, Cohen FE, Dunbrack RL, Jr. J Mol Biol 1997 267:1268-82). 
METHOD  
MODEL 2 
PARENT 1r69 
ATOM      1  N   LEU    30     -16.708   6.594  26.164  1.00  0.00 
ATOM      2  CA  LEU    30     -17.058   6.190  24.785  1.00  0.00 
ATOM      3  C   LEU    30     -17.372   7.343  23.840  1.00  0.00 
ATOM      4  O   LEU    30     -17.047   7.234  22.649  1.00  0.00 
ATOM      5  CB  LEU    30     -18.298   5.293  24.788  1.00  0.00 
ATOM      6  CG  LEU    30     -18.098   3.863  25.293  1.00  0.00 
ATOM      7  CD1 LEU    30     -19.425   3.120  25.341  1.00  0.00 
ATOM      8  CD2 LEU    30     -17.157   3.096  24.378  1.00  0.00 
ATOM      9  N   GLU    31     -18.003   8.374  24.353  1.00  0.00 
ATOM     10  CA  GLU    31     -18.392   9.532  23.539  1.00  0.00 
ATOM     11  C   GLU    31     -17.171  10.278  23.035  1.00  0.00 
ATOM     12  O   GLU    31     -17.174  10.732  21.877  1.00  0.00 
ATOM     13  CB  GLU    31     -19.239  10.505  24.362  1.00  0.00 
ATOM     14  CG  GLU    31     -20.623   9.981  24.711  1.00  0.00 
ATOM     15  CD  GLU    31     -21.408  10.944  25.580  1.00  0.00 
ATOM     16  OE1 GLU    31     -20.859  12.010  25.932  1.00  0.00 
ATOM     17  OE2 GLU    31     -22.571  10.633  25.910  1.00  0.00 
ATOM     18  N   LYS    32     -16.177  10.400  23.877  1.00  0.00 
ATOM     19  CA  LYS    32     -14.912  11.072  23.580  1.00  0.00 
ATOM     20  C   LYS    32     -14.095  10.313  22.551  1.00  0.00 
ATOM     21  O   LYS    32     -13.476  10.951  21.676  1.00  0.00 
ATOM     22  CB  LYS    32     -14.062  11.199  24.846  1.00  0.00 
ATOM     23  CG  LYS    32     -14.594  12.206  25.852  1.00  0.00 
ATOM     24  CD  LYS    32     -13.704  12.281  27.082  1.00  0.00 
ATOM     25  CE  LYS    32     -14.243  13.279  28.094  1.00  0.00 
ATOM     26  NZ  LYS    32     -13.401  13.337  29.320  1.00  0.00 
ATOM     27  N   VAL    33     -14.111   8.996  22.676  1.00  0.00 
ATOM     28  CA  VAL    33     -13.401   8.104  21.752  1.00  0.00 
ATOM     29  C   VAL    33     -14.087   8.146  20.376  1.00  0.00 
ATOM     30  O   VAL    33     -13.357   8.142  19.366  1.00  0.00 
ATOM     31  CB  VAL    33     -13.405   6.649  22.257  1.00  0.00 
ATOM     32  CG1 VAL    33     -12.830   5.717  21.201  1.00  0.00 
ATOM     33  CG2 VAL    33     -12.568   6.521  23.520  1.00  0.00 
ATOM     34  N   SER    34     -15.403   8.184  20.353  1.00  0.00 
ATOM     35  CA  SER    34     -16.199   8.256  19.125  1.00  0.00 
ATOM     36  C   SER    34     -15.839   9.517  18.343  1.00  0.00 
ATOM     37  O   SER    34     -15.543   9.433  17.145  1.00  0.00 
ATOM     38  CB  SER    34     -17.692   8.294  19.456  1.00  0.00 
ATOM     39  OG  SER    34     -18.110   7.086  20.067  1.00  0.00 
ATOM     40  N   GLU    35     -15.832  10.667  19.000  1.00  0.00 
ATOM     41  CA  GLU    35     -15.494  11.953  18.392  1.00  0.00 
ATOM     42  C   GLU    35     -14.046  11.988  17.907  1.00  0.00 
ATOM     43  O   GLU    35     -13.749  12.649  16.892  1.00  0.00 
ATOM     44  CB  GLU    35     -15.675  13.087  19.403  1.00  0.00 
ATOM     45  CG  GLU    35     -17.121  13.346  19.793  1.00  0.00 
ATOM     46  CD  GLU    35     -17.256  14.431  20.843  1.00  0.00 
ATOM     47  OE1 GLU    35     -16.215  14.963  21.285  1.00  0.00 
ATOM     48  OE2 GLU    35     -18.402  14.750  21.225  1.00  0.00 
ATOM     49  N   ARG    36     -13.137  11.331  18.604  1.00  0.00 
ATOM     50  CA  ARG    36     -11.711  11.296  18.219  1.00  0.00 
ATOM     51  C   ARG    36     -11.518  10.449  16.959  1.00  0.00 
ATOM     52  O   ARG    36     -10.700  10.764  16.078  1.00  0.00 
ATOM     53  CB  ARG    36     -10.867  10.691  19.343  1.00  0.00 
ATOM     54  CG  ARG    36     -10.735  11.582  20.568  1.00  0.00 
ATOM     55  CD  ARG    36      -9.876  10.926  21.637  1.00  0.00 
ATOM     56  NE  ARG    36      -9.788  11.743  22.845  1.00  0.00 
ATOM     57  CZ  ARG    36      -9.205  11.348  23.972  1.00  0.00 
ATOM     58  NH1 ARG    36      -9.173  12.159  25.021  1.00  0.00 
ATOM     59  NH2 ARG    36      -8.655  10.144  24.048  1.00  0.00 
ATOM     60  N   SER    37     -12.281   9.382  16.884  1.00  0.00 
ATOM     61  CA  SER    37     -12.262   8.435  15.755  1.00  0.00 
ATOM     62  C   SER    37     -13.091   9.002  14.606  1.00  0.00 
ATOM     63  O   SER    37     -12.733   8.778  13.441  1.00  0.00 
ATOM     64  CB  SER    37     -12.850   7.087  16.176  1.00  0.00 
ATOM     65  OG  SER    37     -14.197   7.226  16.595  1.00  0.00 
ATOM     66  N   GLY    38     -14.144   9.732  14.914  1.00  0.00 
ATOM     67  CA  GLY    38     -15.028  10.338  13.915  1.00  0.00 
ATOM     68  C   GLY    38     -16.145   9.377  13.523  1.00  0.00 
ATOM     69  O   GLY    38     -16.572   9.312  12.365  1.00  0.00 
ATOM     70  N   TYR    39     -16.620   8.627  14.501  1.00  0.00 
ATOM     71  CA  TYR    39     -17.700   7.651  14.325  1.00  0.00 
ATOM     72  C   TYR    39     -18.824   7.974  15.312  1.00  0.00 
ATOM     73  O   TYR    39     -18.790   9.012  15.981  1.00  0.00 
ATOM     74  CB  TYR    39     -17.189   6.233  14.588  1.00  0.00 
ATOM     75  CG  TYR    39     -16.066   5.806  13.670  1.00  0.00 
ATOM     76  CD1 TYR    39     -14.742   5.883  14.082  1.00  0.00 
ATOM     77  CD2 TYR    39     -16.334   5.328  12.393  1.00  0.00 
ATOM     78  CE1 TYR    39     -13.709   5.496  13.250  1.00  0.00 
ATOM     79  CE2 TYR    39     -15.314   4.936  11.547  1.00  0.00 
ATOM     80  CZ  TYR    39     -13.994   5.024  11.987  1.00  0.00 
ATOM     81  OH  TYR    39     -12.967   4.637  11.156  1.00  0.00 
ATOM     82  N   SER    40     -19.803   7.099  15.358  1.00  0.00 
ATOM     83  CA  SER    40     -20.986   7.204  16.204  1.00  0.00 
ATOM     84  C   SER    40     -20.720   6.581  17.570  1.00  0.00 
ATOM     85  O   SER    40     -19.822   5.734  17.685  1.00  0.00 
ATOM     86  CB  SER    40     -22.170   6.478  15.562  1.00  0.00 
ATOM     87  OG  SER    40     -21.916   5.088  15.452  1.00  0.00 
ATOM     88  N   LYS    41     -21.500   7.012  18.552  1.00  0.00 
ATOM     89  CA  LYS    41     -21.349   6.461  19.921  1.00  0.00 
ATOM     90  C   LYS    41     -21.656   4.963  19.881  1.00  0.00 
ATOM     91  O   LYS    41     -20.934   4.159  20.475  1.00  0.00 
ATOM     92  CB  LYS    41     -22.314   7.152  20.886  1.00  0.00 
ATOM     93  CG  LYS    41     -21.930   8.581  21.231  1.00  0.00 
ATOM     94  CD  LYS    41     -22.930   9.205  22.191  1.00  0.00 
ATOM     95  CE  LYS    41     -22.552  10.639  22.527  1.00  0.00 
ATOM     96  NZ  LYS    41     -23.542  11.275  23.439  1.00  0.00 
ATOM     97  N   TRP    42     -22.688   4.591  19.159  1.00  0.00 
ATOM     98  CA  TRP    42     -23.188   3.240  18.947  1.00  0.00 
ATOM     99  C   TRP    42     -22.139   2.322  18.329  1.00  0.00 
ATOM    100  O   TRP    42     -22.112   1.135  18.703  1.00  0.00 
ATOM    101  CB  TRP    42     -24.394   3.257  18.006  1.00  0.00 
ATOM    102  CG  TRP    42     -25.648   3.769  18.646  1.00  0.00 
ATOM    103  CD1 TRP    42     -26.156   5.032  18.557  1.00  0.00 
ATOM    104  CD2 TRP    42     -26.553   3.028  19.474  1.00  0.00 
ATOM    105  NE1 TRP    42     -27.322   5.127  19.278  1.00  0.00 
ATOM    106  CE2 TRP    42     -27.587   3.908  19.852  1.00  0.00 
ATOM    107  CE3 TRP    42     -26.590   1.709  19.934  1.00  0.00 
ATOM    108  CZ2 TRP    42     -28.646   3.510  20.666  1.00  0.00 
ATOM    109  CZ3 TRP    42     -27.642   1.319  20.741  1.00  0.00 
ATOM    110  CH2 TRP    42     -28.656   2.213  21.101  1.00  0.00 
ATOM    111  N   HIS    43     -21.301   2.794  17.437  1.00  0.00 
ATOM    112  CA  HIS    43     -20.250   1.992  16.811  1.00  0.00 
ATOM    113  C   HIS    43     -19.221   1.587  17.877  1.00  0.00 
ATOM    114  O   HIS    43     -18.693   0.470  17.822  1.00  0.00 
ATOM    115  CB  HIS    43     -19.546   2.794  15.715  1.00  0.00 
ATOM    116  CG  HIS    43     -18.503   2.016  14.973  1.00  0.00 
ATOM    117  ND1 HIS    43     -18.808   1.157  13.941  1.00  0.00 
ATOM    118  CD2 HIS    43     -17.054   1.894  15.044  1.00  0.00 
ATOM    119  CE1 HIS    43     -17.671   0.609  13.476  1.00  0.00 
ATOM    120  NE2 HIS    43     -16.615   1.046  14.134  1.00  0.00 
ATOM    121  N   LEU    44     -18.943   2.522  18.782  1.00  0.00 
ATOM    122  CA  LEU    44     -17.984   2.292  19.859  1.00  0.00 
ATOM    123  C   LEU    44     -18.514   1.235  20.842  1.00  0.00 
ATOM    124  O   LEU    44     -17.774   0.368  21.311  1.00  0.00 
ATOM    125  CB  LEU    44     -17.729   3.586  20.635  1.00  0.00 
ATOM    126  CG  LEU    44     -16.634   3.532  21.702  1.00  0.00 
ATOM    127  CD1 LEU    44     -15.280   3.249  21.069  1.00  0.00 
ATOM    128  CD2 LEU    44     -16.544   4.855  22.447  1.00  0.00 
ATOM    129  N   GLN    45     -19.792   1.341  21.126  1.00  0.00 
ATOM    130  CA  GLN    45     -20.517   0.454  22.024  1.00  0.00 
ATOM    131  C   GLN    45     -20.522  -0.972  21.502  1.00  0.00 
ATOM    132  O   GLN    45     -20.299  -1.918  22.273  1.00  0.00 
ATOM    133  CB  GLN    45     -21.970   0.910  22.170  1.00  0.00 
ATOM    134  CG  GLN    45     -22.139   2.203  22.953  1.00  0.00 
ATOM    135  CD  GLN    45     -23.584   2.656  23.023  1.00  0.00 
ATOM    136  OE1 GLN    45     -24.474   2.013  22.468  1.00  0.00 
ATOM    137  NE2 GLN    45     -23.820   3.769  23.708  1.00  0.00 
ATOM    138  N   ARG    46     -20.767  -1.097  20.212  1.00  0.00 
ATOM    139  CA  ARG    46     -20.806  -2.392  19.522  1.00  0.00 
ATOM    140  C   ARG    46     -19.442  -3.064  19.488  1.00  0.00 
ATOM    141  O   ARG    46     -19.358  -4.302  19.531  1.00  0.00 
ATOM    142  CB  ARG    46     -21.270  -2.214  18.075  1.00  0.00 
ATOM    143  CG  ARG    46     -22.735  -1.833  17.935  1.00  0.00 
ATOM    144  CD  ARG    46     -23.130  -1.686  16.475  1.00  0.00 
ATOM    145  NE  ARG    46     -24.519  -1.260  16.324  1.00  0.00 
ATOM    146  CZ  ARG    46     -25.080  -0.937  15.163  1.00  0.00 
ATOM    147  NH1 ARG    46     -26.351  -0.562  15.122  1.00  0.00 
ATOM    148  NH2 ARG    46     -24.368  -0.991  14.045  1.00  0.00 
ATOM    149  N   MET    47     -18.393  -2.284  19.405  1.00  0.00 
ATOM    150  CA  MET    47     -17.022  -2.831  19.384  1.00  0.00 
ATOM    151  C   MET    47     -16.652  -3.292  20.793  1.00  0.00 
ATOM    152  O   MET    47     -16.017  -4.344  20.957  1.00  0.00 
ATOM    153  CB  MET    47     -16.026  -1.764  18.924  1.00  0.00 
ATOM    154  CG  MET    47     -16.151  -1.390  17.456  1.00  0.00 
ATOM    155  SD  MET    47     -15.832  -2.781  16.354  1.00  0.00 
ATOM    156  CE  MET    47     -14.070  -3.000  16.588  1.00  0.00 
ATOM    157  N   PHE    48     -17.069  -2.543  21.799  1.00  0.00 
ATOM    158  CA  PHE    48     -16.796  -2.867  23.205  1.00  0.00 
ATOM    159  C   PHE    48     -17.641  -4.005  23.736  1.00  0.00 
ATOM    160  O   PHE    48     -17.223  -4.610  24.735  1.00  0.00 
ATOM    161  CB  PHE    48     -17.072  -1.655  24.097  1.00  0.00 
ATOM    162  CG  PHE    48     -16.597  -1.824  25.512  1.00  0.00 
ATOM    163  CD1 PHE    48     -15.255  -1.700  25.827  1.00  0.00 
ATOM    164  CD2 PHE    48     -17.493  -2.107  26.529  1.00  0.00 
ATOM    165  CE1 PHE    48     -14.819  -1.855  27.129  1.00  0.00 
ATOM    166  CE2 PHE    48     -17.056  -2.262  27.831  1.00  0.00 
ATOM    167  CZ  PHE    48     -15.726  -2.138  28.133  1.00  0.00 
ATOM    168  N   LYS    49     -18.729  -4.333  23.076  1.00  0.00 
ATOM    169  CA  LYS    49     -19.650  -5.419  23.423  1.00  0.00 
ATOM    170  C   LYS    49     -19.428  -6.643  22.521  1.00  0.00 
ATOM    171  O   LYS    49     -20.228  -7.597  22.495  1.00  0.00 
ATOM    172  CB  LYS    49     -21.101  -4.964  23.258  1.00  0.00 
ATOM    173  CG  LYS    49     -21.577  -4.003  24.335  1.00  0.00 
ATOM    174  CD  LYS    49     -23.023  -3.593  24.110  1.00  0.00 
ATOM    175  CE  LYS    49     -23.495  -2.622  25.181  1.00  0.00 
ATOM    176  NZ  LYS    49     -24.900  -2.184  24.953  1.00  0.00 
TER     
END 
