PFRMAT SS 
TARGET T0079 
AUTHOR 3403-1625-5531 
METHOD New Joint Method including SSthread 
METHOD (Prediction of protein Secondary Structure using Threading) 
METHOD K. Nishikawa and T. Noguchi:  
METHOD Methods in Enzymology, Vol.202, pp.31-44 (1991).  
METHOD M. Ito, Y. Matsuo and K. Nishikawa:  
METHOD Comput. Appl. Biosci. Vol.13, pp.415-423 (1997). 
MODEL  1 
M C 0.6 
T E 0.2 
M E 0.2 
S C 0.8 
R C 1.0 
R C 1.0 
N C 1.0 
T C 1.0 
D C 1.0 
A C 0.8 
I E 0.6 
T E 0.8 
I E 0.6 
H H 0.6 
S H 0.2 
I H 0.2 
L H 0.6 
D H 0.2 
W H 0.6 
I H 0.6 
E H 0.1 
D C 0.8 
N C 0.8 
L C 0.6 
E C 1.0 
S C 1.0 
P C 1.0 
L C 1.0 
S C 0.8 
L C 0.4 
E E 0.2 
K E 0.4 
V C 0.6 
S C 0.6 
E C 0.8 
R C 1.0 
S C 1.0 
G C 1.0 
Y C 1.0 
S C 1.0 
K H 0.6 
W H 0.6 
H H 0.6 
L H 0.6 
Q H 0.6 
R H 0.6 
M H 0.6 
F H 0.6 
K C 0.6 
K C 0.6 
E C 0.8 
T C 1.0 
G C 1.0 
H C 1.0 
S C 1.0 
L C 0.6 
G C 0.6 
Q C 0.6 
Y E 0.4 
I E 0.4 
R E 0.4 
S H 0.8 
R H 0.6 
K H 0.2 
M H 0.8 
T H 0.8 
E H 1.0 
I H 1.0 
A H 1.0 
Q H 1.0 
K H 1.0 
L H 0.8 
K C 0.6 
E C 0.8 
S C 1.0 
N C 1.0 
E C 1.0 
P C 0.8 
I E 0.8 
L E 0.8 
Y E 1.0 
L E 0.8 
A C 0.6 
E C 0.8 
R C 0.8 
Y C 1.0 
G C 1.0 
F C 1.0 
E C 0.8 
S C 1.0 
Q H 0.6 
Q H 0.6 
T H 0.8 
L H 0.6 
T H 0.6 
R H 0.8 
T H 0.6 
F H 0.6 
K H 0.6 
N C 1.0 
Y C 0.8 
F C 0.8 
D C 1.0 
V C 1.0 
P C 1.0 
P C 1.0 
H C 1.0 
K C 1.0 
Y C 0.8 
R C 0.8 
M C 0.8 
T C 0.8 
N C 0.8 
M C 0.6 
Q C 0.8 
G C 0.8 
E C 0.8 
S C 0.8 
R C 0.8 
F C 0.6 
L C 0.6 
H C 0.8 
P C 0.8 
L C 0.8 
N C 1.0 
H C 1.0 
Y C 1.0 
N C 1.0 
S C 1.0 
END 
