REMARK  ----------------------------------------------------------  
REMARK  Molecule : T0076AL201_1  
REMARK  Alignment model prepared for CASP3 experiment  
REMARK  by group : TATSUYA-AKUTSU  
REMARK  ----------------------------------------------------------  
TARGET T0076   
AUTHOR 7648-2940-6918   
REMARK    
METHOD We align a target sequence with structurally aligned sequences   
METHOD (i.e., multiple structure alignment), where a multiple structure   
METHOD alignment is computed from results of pairwise structure alignments   
METHOD for similar structures.    
METHOD Pairwise structure alignments are computed using a computer   
METHOD program STRALIGN [1] developed by the group-leader and they are   
METHOD combined into a multiple structure alignment using a method like   
METHOD center-star alignment.   
METHOD A simple dynamic programming procedure (Smith-Waterman like procedure)   
METHOD is used for computing an alignment between a target sequence and   
METHOD the aligned sequences.   
METHOD Finally, an alignment between a target and one of the aligned   
METHOD sequences (i.e., template sequence) is extracted and refined.   
METHOD Human knowledge is also used to find template structures and   
METHOD to refine alignments.   
METHOD   
METHOD [1] T. Akutsu: Protein structure alignment using dynamic programming   
METHOD and iterative alignment, IEICE Transactions on Information and Systems,   
METHOD vol. E79-D, pp. 1629--1636, 1996.   
METHOD   
METHOD Program code of STRALIGN is available via   
METHOD http://www.hgc.ims.u-tokyo.ac.jp/service/tooldoc/stralign/intro.html   
MODEL  1   
REMARK  ----------------------------------------------------------  
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov  
REMARK  ----------------------------------------------------------  
REMARK  Coordinates assigned from PDB entry: 1cm4_A  
ATOM      1  N   LYS     8      18.123  56.557  82.827  1.00  0.00              
ATOM      2  CA  LYS     8      16.693  56.459  83.096  1.00  0.00              
ATOM      3  C   LYS     8      15.947  56.748  81.806  1.00  0.00              
ATOM      4  O   LYS     8      14.985  56.061  81.468  1.00  0.00              
ATOM      5  N   GLN     9      16.425  57.784  81.104  1.00  0.00              
ATOM      6  CA  GLN     9      15.868  58.202  79.835  1.00  0.00              
ATOM      7  C   GLN     9      16.060  57.171  78.721  1.00  0.00              
ATOM      8  O   GLN     9      15.174  57.008  77.881  1.00  0.00              
ATOM      9  N   ALA    10      17.190  56.449  78.697  1.00  0.00              
ATOM     10  CA  ALA    10      17.416  55.382  77.727  1.00  0.00              
ATOM     11  C   ALA    10      16.545  54.161  78.006  1.00  0.00              
ATOM     12  O   ALA    10      16.244  53.385  77.098  1.00  0.00              
ATOM     13  N   PHE    11      16.137  53.982  79.274  1.00  0.00              
ATOM     14  CA  PHE    11      15.224  52.919  79.660  1.00  0.00              
ATOM     15  C   PHE    11      13.818  53.259  79.164  1.00  0.00              
ATOM     16  O   PHE    11      13.151  52.403  78.583  1.00  0.00              
ATOM     17  N   SER    12      13.376  54.510  79.365  1.00  0.00              
ATOM     18  CA  SER    12      12.043  54.982  78.982  1.00  0.00              
ATOM     19  C   SER    12      11.639  54.831  77.521  1.00  0.00              
ATOM     20  O   SER    12      10.462  54.591  77.240  1.00  0.00              
ATOM     21  N   LEU    13      12.598  54.961  76.585  1.00  0.00              
ATOM     22  CA  LEU    13      12.324  54.839  75.156  1.00  0.00              
ATOM     23  C   LEU    13      12.027  53.416  74.695  1.00  0.00              
ATOM     24  O   LEU    13      11.206  53.232  73.794  1.00  0.00              
ATOM     25  N   PHE    14      12.661  52.393  75.292  1.00  0.00              
ATOM     26  CA  PHE    14      12.370  50.997  74.968  1.00  0.00              
ATOM     27  C   PHE    14      11.065  50.508  75.589  1.00  0.00              
ATOM     28  O   PHE    14      10.361  49.653  75.046  1.00  0.00              
ATOM     29  N   ASP    15      10.725  51.111  76.734  1.00  0.00              
ATOM     30  CA  ASP    15       9.600  50.713  77.568  1.00  0.00              
ATOM     31  C   ASP    15       8.181  50.768  77.007  1.00  0.00              
ATOM     32  O   ASP    15       7.247  50.358  77.690  1.00  0.00              
ATOM     33  N   ARG    16       8.024  51.249  75.768  1.00  0.00              
ATOM     34  CA  ARG    16       6.779  51.355  75.004  1.00  0.00              
ATOM     35  C   ARG    16       5.379  51.250  75.603  1.00  0.00              
ATOM     36  O   ARG    16       4.647  52.241  75.547  1.00  0.00              
ATOM     37  N   HIS    17       4.964  50.094  76.159  1.00  0.00              
ATOM     38  CA  HIS    17       3.628  49.935  76.740  1.00  0.00              
ATOM     39  C   HIS    17       3.508  50.379  78.198  1.00  0.00              
ATOM     40  O   HIS    17       2.475  50.207  78.855  1.00  0.00              
ATOM     41  N   GLY    18       4.585  51.002  78.683  1.00  0.00              
ATOM     42  CA  GLY    18       4.709  51.375  80.068  1.00  0.00              
ATOM     43  C   GLY    18       5.263  50.165  80.793  1.00  0.00              
ATOM     44  O   GLY    18       6.266  49.582  80.387  1.00  0.00              
ATOM     45  N   THR    19       4.552  49.780  81.853  1.00  0.00              
ATOM     46  CA  THR    19       4.854  48.678  82.763  1.00  0.00              
ATOM     47  C   THR    19       6.294  48.460  83.259  1.00  0.00              
ATOM     48  O   THR    19       6.643  47.379  83.743  1.00  0.00              
ATOM     49  N   GLY    20       7.124  49.516  83.161  1.00  0.00              
ATOM     50  CA  GLY    20       8.489  49.562  83.672  1.00  0.00              
ATOM     51  C   GLY    20       9.361  48.336  83.471  1.00  0.00              
ATOM     52  O   GLY    20      10.130  48.015  84.370  1.00  0.00              
ATOM     53  N   ARG    21       9.234  47.631  82.333  1.00  0.00              
ATOM     54  CA  ARG    21      10.020  46.446  82.011  1.00  0.00              
ATOM     55  C   ARG    21      10.387  46.381  80.534  1.00  0.00              
ATOM     56  O   ARG    21       9.654  46.900  79.705  1.00  0.00              
ATOM     57  N   ILE    22      11.480  45.719  80.140  1.00  0.00              
ATOM     58  CA  ILE    22      11.856  45.613  78.732  1.00  0.00              
ATOM     59  C   ILE    22      11.995  44.148  78.315  1.00  0.00              
ATOM     60  O   ILE    22      12.722  43.361  78.920  1.00  0.00              
ATOM     61  N   PRO    23      11.314  43.780  77.228  1.00  0.00              
ATOM     62  CA  PRO    23      11.333  42.420  76.710  1.00  0.00              
ATOM     63  C   PRO    23      12.262  42.274  75.505  1.00  0.00              
ATOM     64  O   PRO    23      12.810  43.265  75.018  1.00  0.00              
ATOM     65  N   LYS    24      12.442  41.052  74.982  1.00  0.00              
ATOM     66  CA  LYS    24      13.184  40.872  73.739  1.00  0.00              
ATOM     67  C   LYS    24      12.444  41.546  72.582  1.00  0.00              
ATOM     68  O   LYS    24      13.070  42.030  71.643  1.00  0.00              
ATOM     69  N   THR    25      11.101  41.605  72.701  1.00  0.00              
ATOM     70  CA  THR    25      10.240  42.254  71.733  1.00  0.00              
ATOM     71  C   THR    25      10.488  43.741  71.664  1.00  0.00              
ATOM     72  O   THR    25      10.641  44.252  70.560  1.00  0.00              
ATOM     73  N   SER    26      10.556  44.452  72.799  1.00  0.00              
ATOM     74  CA  SER    26      10.816  45.887  72.789  1.00  0.00              
ATOM     75  C   SER    26      12.215  46.207  72.283  1.00  0.00              
ATOM     76  O   SER    26      12.423  47.244  71.649  1.00  0.00              
ATOM     77  N   ILE    27      13.180  45.301  72.495  1.00  0.00              
ATOM     78  CA  ILE    27      14.501  45.448  71.894  1.00  0.00              
ATOM     79  C   ILE    27      14.384  45.367  70.382  1.00  0.00              
ATOM     80  O   ILE    27      14.771  46.294  69.687  1.00  0.00              
ATOM     81  N   GLY    28      13.817  44.269  69.882  1.00  0.00              
ATOM     82  CA  GLY    28      13.701  44.014  68.451  1.00  0.00              
ATOM     83  C   GLY    28      12.945  45.085  67.674  1.00  0.00              
ATOM     84  O   GLY    28      13.344  45.451  66.571  1.00  0.00              
ATOM     85  N   ASP    29      11.879  45.601  68.294  1.00  0.00              
ATOM     86  CA  ASP    29      10.993  46.597  67.730  1.00  0.00              
ATOM     87  C   ASP    29      11.685  47.944  67.610  1.00  0.00              
ATOM     88  O   ASP    29      11.775  48.475  66.503  1.00  0.00              
ATOM     89  N   LEU    30      12.221  48.485  68.716  1.00  0.00              
ATOM     90  CA  LEU    30      12.918  49.771  68.722  1.00  0.00              
ATOM     91  C   LEU    30      14.190  49.710  67.864  1.00  0.00              
ATOM     92  O   LEU    30      14.556  50.703  67.229  1.00  0.00              
ATOM     93  N   LEU    31      14.873  48.558  67.793  1.00  0.00              
ATOM     94  CA  LEU    31      16.049  48.452  66.940  1.00  0.00              
ATOM     95  C   LEU    31      15.674  48.376  65.468  1.00  0.00              
ATOM     96  O   LEU    31      16.420  48.889  64.635  1.00  0.00              
ATOM     97  N   ARG    32      14.519  47.785  65.120  1.00  0.00              
ATOM     98  CA  ARG    32      14.085  47.754  63.730  1.00  0.00              
ATOM     99  C   ARG    32      13.591  49.108  63.236  1.00  0.00              
ATOM    100  O   ARG    32      13.702  49.375  62.036  1.00  0.00              
ATOM    101  N   ALA    33      13.093  49.989  64.133  1.00  0.00              
ATOM    102  CA  ALA    33      12.700  51.335  63.730  1.00  0.00              
ATOM    103  C   ALA    33      13.917  52.222  63.495  1.00  0.00              
ATOM    104  O   ALA    33      13.807  53.317  62.946  1.00  0.00              
ATOM    105  N   CYS    34      15.085  51.771  63.960  1.00  0.00              
ATOM    106  CA  CYS    34      16.330  52.456  63.699  1.00  0.00              
ATOM    107  C   CYS    34      17.091  51.748  62.576  1.00  0.00              
ATOM    108  O   CYS    34      18.319  51.824  62.479  1.00  0.00              
ATOM    109  N   GLY    35      16.351  51.031  61.713  1.00  0.00              
ATOM    110  CA  GLY    35      16.902  50.378  60.533  1.00  0.00              
ATOM    111  C   GLY    35      17.781  49.165  60.777  1.00  0.00              
ATOM    112  O   GLY    35      18.495  48.729  59.868  1.00  0.00              
ATOM    113  N   GLN    36      17.756  48.617  61.994  1.00  0.00              
ATOM    114  CA  GLN    36      18.543  47.436  62.302  1.00  0.00              
ATOM    115  C   GLN    36      17.649  46.209  62.181  1.00  0.00              
ATOM    116  O   GLN    36      16.426  46.332  62.116  1.00  0.00              
ATOM    117  N   ASN    37      18.224  45.008  62.101  1.00  0.00              
ATOM    118  CA  ASN    37      17.415  43.808  62.034  1.00  0.00              
ATOM    119  C   ASN    37      17.999  42.684  62.870  1.00  0.00              
ATOM    120  O   ASN    37      18.834  41.898  62.415  1.00  0.00              
ATOM    121  N   PRO    38      17.587  42.615  64.145  1.00  0.00              
ATOM    122  CA  PRO    38      17.984  41.565  65.062  1.00  0.00              
ATOM    123  C   PRO    38      17.327  40.226  64.786  1.00  0.00              
ATOM    124  O   PRO    38      16.229  40.130  64.237  1.00  0.00              
ATOM    125  N   THR    39      18.057  39.180  65.148  1.00  0.00              
ATOM    126  CA  THR    39      17.554  37.821  65.057  1.00  0.00              
ATOM    127  C   THR    39      17.013  37.385  66.416  1.00  0.00              
ATOM    128  O   THR    39      17.510  37.857  67.437  1.00  0.00              
ATOM    129  N   LEU    40      15.993  36.514  66.472  1.00  0.00              
ATOM    130  CA  LEU    40      15.419  36.047  67.731  1.00  0.00              
ATOM    131  C   LEU    40      16.432  35.452  68.713  1.00  0.00              
ATOM    132  O   LEU    40      16.323  35.644  69.925  1.00  0.00              
ATOM    133  N   ALA    41      17.457  34.771  68.166  1.00  0.00              
ATOM    134  CA  ALA    41      18.529  34.159  68.938  1.00  0.00              
ATOM    135  C   ALA    41      19.430  35.220  69.543  1.00  0.00              
ATOM    136  O   ALA    41      19.732  35.149  70.732  1.00  0.00              
ATOM    137  N   GLU    42      19.831  36.230  68.754  1.00  0.00              
ATOM    138  CA  GLU    42      20.660  37.308  69.271  1.00  0.00              
ATOM    139  C   GLU    42      19.916  38.320  70.124  1.00  0.00              
ATOM    140  O   GLU    42      20.555  39.096  70.827  1.00  0.00              
ATOM    141  N   ILE    43      18.827  40.190  76.270  1.00  0.00              
ATOM    142  CA  ILE    43      17.957  40.314  77.438  1.00  0.00              
ATOM    143  C   ILE    43      18.165  39.243  78.501  1.00  0.00              
ATOM    144  O   ILE    43      18.353  39.609  79.660  1.00  0.00              
ATOM    145  N   THR    44      18.160  37.940  78.173  1.00  0.00              
ATOM    146  CA  THR    44      18.356  36.893  79.178  1.00  0.00              
ATOM    147  C   THR    44      19.725  36.837  79.852  1.00  0.00              
ATOM    148  O   THR    44      19.936  36.141  80.850  1.00  0.00              
ATOM    149  N   GLU    45      20.658  37.604  79.290  1.00  0.00              
ATOM    150  CA  GLU    45      21.990  37.770  79.835  1.00  0.00              
ATOM    151  C   GLU    45      21.916  38.598  81.119  1.00  0.00              
ATOM    152  O   GLU    45      22.548  38.287  82.133  1.00  0.00              
ATOM    153  N   ILE    46      21.091  39.647  81.069  1.00  0.00              
ATOM    154  CA  ILE    46      20.913  40.559  82.192  1.00  0.00              
ATOM    155  C   ILE    46      19.577  40.296  82.896  1.00  0.00              
ATOM    156  O   ILE    46      19.182  41.077  83.766  1.00  0.00              
ATOM    157  N   GLU    47      18.873  39.194  82.574  1.00  0.00              
ATOM    158  CA  GLU    47      17.542  38.936  83.111  1.00  0.00              
ATOM    159  C   GLU    47      17.462  38.898  84.622  1.00  0.00              
ATOM    160  O   GLU    47      16.952  39.876  85.146  1.00  0.00              
ATOM    161  N   SER    48      17.946  37.869  85.341  1.00  0.00              
ATOM    162  CA  SER    48      17.813  37.731  86.797  1.00  0.00              
ATOM    163  C   SER    48      16.372  37.725  87.318  1.00  0.00              
ATOM    164  O   SER    48      15.432  38.076  86.606  1.00  0.00              
ATOM    165  N   THR    49      16.171  37.284  88.567  1.00  0.00              
ATOM    166  CA  THR    49      14.873  37.129  89.236  1.00  0.00              
ATOM    167  C   THR    49      13.768  36.369  88.496  1.00  0.00              
ATOM    168  O   THR    49      12.634  36.258  88.974  1.00  0.00              
ATOM    169  N   LEU    50      14.116  35.757  87.357  1.00  0.00              
ATOM    170  CA  LEU    50      13.151  35.091  86.499  1.00  0.00              
ATOM    171  C   LEU    50      12.405  36.129  85.676  1.00  0.00              
ATOM    172  O   LEU    50      13.005  37.074  85.168  1.00  0.00              
ATOM    173  N   PRO    51      11.086  35.923  85.579  1.00  0.00              
ATOM    174  CA  PRO    51      10.092  36.744  84.884  1.00  0.00              
ATOM    175  C   PRO    51      10.258  37.166  83.417  1.00  0.00              
ATOM    176  O   PRO    51       9.265  37.567  82.810  1.00  0.00              
ATOM    177  N   ALA    52      11.448  37.099  82.799  1.00  0.00              
ATOM    178  CA  ALA    52      11.628  37.380  81.381  1.00  0.00              
ATOM    179  C   ALA    52      11.681  38.837  80.919  1.00  0.00              
ATOM    180  O   ALA    52      11.743  39.087  79.710  1.00  0.00              
ATOM    181  N   GLU    53      11.650  39.838  81.802  1.00  0.00              
ATOM    182  CA  GLU    53      11.711  41.228  81.363  1.00  0.00              
ATOM    183  C   GLU    53      12.827  41.970  82.080  1.00  0.00              
ATOM    184  O   GLU    53      13.405  41.451  83.028  1.00  0.00              
ATOM    185  N   VAL    54      13.160  43.192  81.671  1.00  0.00              
ATOM    186  CA  VAL    54      14.204  43.955  82.329  1.00  0.00              
ATOM    187  C   VAL    54      13.683  45.264  82.890  1.00  0.00              
ATOM    188  O   VAL    54      13.176  46.138  82.191  1.00  0.00              
ATOM    189  N   ASP    55      13.793  45.331  84.219  1.00  0.00              
ATOM    190  CA  ASP    55      13.439  46.517  84.979  1.00  0.00              
ATOM    191  C   ASP    55      14.631  47.469  85.027  1.00  0.00              
ATOM    192  O   ASP    55      15.712  47.088  84.568  1.00  0.00              
ATOM    193  N   MET    56      14.520  48.682  85.599  1.00  0.00              
ATOM    194  CA  MET    56      15.654  49.597  85.598  1.00  0.00              
ATOM    195  C   MET    56      16.876  49.154  86.404  1.00  0.00              
ATOM    196  O   MET    56      17.952  49.357  85.848  1.00  0.00              
ATOM    197  N   GLU    57      16.877  48.568  87.626  1.00  0.00              
ATOM    198  CA  GLU    57      18.056  47.975  88.268  1.00  0.00              
ATOM    199  C   GLU    57      18.897  47.105  87.350  1.00  0.00              
ATOM    200  O   GLU    57      20.116  47.250  87.337  1.00  0.00              
ATOM    201  N   GLN    58      18.244  46.259  86.536  1.00  0.00              
ATOM    202  CA  GLN    58      18.931  45.391  85.575  1.00  0.00              
ATOM    203  C   GLN    58      19.621  46.129  84.440  1.00  0.00              
ATOM    204  O   GLN    58      20.778  45.844  84.123  1.00  0.00              
ATOM    205  N   PHE    59      18.891  47.096  83.860  1.00  0.00              
ATOM    206  CA  PHE    59      19.375  47.946  82.777  1.00  0.00              
ATOM    207  C   PHE    59      20.598  48.703  83.259  1.00  0.00              
ATOM    208  O   PHE    59      21.604  48.762  82.568  1.00  0.00              
ATOM    209  N   LEU    60      20.488  49.228  84.482  1.00  0.00              
ATOM    210  CA  LEU    60      21.523  49.970  85.163  1.00  0.00              
ATOM    211  C   LEU    60      22.781  49.122  85.341  1.00  0.00              
ATOM    212  O   LEU    60      23.873  49.611  85.049  1.00  0.00              
ATOM    213  N   GLN    61      22.663  47.839  85.736  1.00  0.00              
ATOM    214  CA  GLN    61      23.840  46.978  85.922  1.00  0.00              
ATOM    215  C   GLN    61      24.508  46.690  84.581  1.00  0.00              
ATOM    216  O   GLN    61      25.734  46.696  84.472  1.00  0.00              
ATOM    217  N   VAL    62      23.675  46.466  83.555  1.00  0.00              
ATOM    218  CA  VAL    62      24.117  46.186  82.199  1.00  0.00              
ATOM    219  C   VAL    62      25.001  47.302  81.662  1.00  0.00              
ATOM    220  O   VAL    62      26.042  47.023  81.075  1.00  0.00              
ATOM    221  N   LEU    63      24.625  48.560  81.939  1.00  0.00              
ATOM    222  CA  LEU    63      25.347  49.734  81.466  1.00  0.00              
ATOM    223  C   LEU    63      26.723  49.934  82.087  1.00  0.00              
ATOM    224  O   LEU    63      27.514  50.762  81.632  1.00  0.00              
ATOM    225  N   ASN    64      27.005  49.161  83.141  1.00  0.00              
ATOM    226  CA  ASN    64      28.304  49.155  83.791  1.00  0.00              
ATOM    227  C   ASN    64      29.024  47.865  83.415  1.00  0.00              
ATOM    228  O   ASN    64      30.020  47.888  82.692  1.00  0.00              
ATOM    229  N   ARG    65      28.504  46.723  83.883  1.00  0.00              
ATOM    230  CA  ARG    65      29.052  45.407  83.584  1.00  0.00              
ATOM    231  C   ARG    65      28.389  44.868  82.321  1.00  0.00              
ATOM    232  O   ARG    65      27.479  44.032  82.307  1.00  0.00              
END 
