REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0075AL156_2 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : BENNER-COHEN 
REMARK  ---------------------------------------------------------- 
TARGET T0075  
AUTHOR 5529-3140-9255  
REMARK Prediction team BENNER-COHEN has two group leaders,  
REMARK but we will consistently use Steven Benner's predictor  
REMARK number to avoid confusion concerning a second team  
REMARK connected with Fred Cohen (called Cohen, Fred).  
REMARK (Fred Cohen's number as a group leader is 6140-7890-6093).  
REMARK Prediction team members: D.L.Gerloff, G.Cannarozzi,  
REMARK M.Joachimiak, F.E.Cohen & S.A.Benner.  
REMARK  
REMARK This threading alignment prediction is NOT accompanied by  
REMARK a separate secondary structure submission !!  
METHOD  
METHOD AS THE C-TERMINAL PART HAS SOME SEQUENCE SIMILARITY TO THE  
METHOD HELIX-LOOP-HELIX PROTEINS (SETH & PAPAS, ONCOGENE (1990), 5:1761-1767)   
METHOD WE ARE SUBMITTING THE SUGGESTED THREADING ALIGNMENT WITH A MEMBER OF  
METHOD THE bHLH PROTEINS (1AN4, USF1) AS A SECOND ALTERNATIVE. IF THE TARGET  
METHOD PROTEIN OCCURRED AT A DIMER, ONE WOULD HAVE TO START FROM THE HLH-  
METHOD FRAGMENT AND PACK A FRAGMENT SIMILAR TO A PART OF MODEL1:75-100   
METHOD AGAINST THE SIDE NOT OCCUPIED BY DIMER-INTERACTIONS. DUE TO TIME  
METHOD PRESSURE, WE WILL NOT BE ABLE TO MODEL THIS ALTERNATIVE IN COORDINATE  
METHOD FORMAT.  
METHOD OUR FAVORITE MODEL IS NUMBER ONE, SUBMITTED PREVIOUSLY,  
METHOD AND WE HAVE NO INDICATIONS FROM THE  
METHOD LITERATURE THAT T0075 IS A MANDATORY OLIGOMER. IN FACT, WE FOUND THE  
METHOD SOME REMARKS IN THE LITERATURE THAT THE ETS1 PROTEIN (FULL PROTEIN)  
METHOD APPEARS TO BE CAPABLE OF BINDING TO DNA AS A MONOMER.  
METHOD  
MODEL  2  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1an4_A 
ATOM      1  N   LYS    97      52.254 -17.419   7.694  1.00  0.00              
ATOM      2  CA  LYS    97      53.574 -16.790   7.785  1.00  0.00              
ATOM      3  C   LYS    97      54.668 -17.906   7.634  1.00  0.00              
ATOM      4  O   LYS    97      55.467 -17.911   6.686  1.00  0.00              
ATOM      5  N   PHE    98      54.709 -18.826   8.596  1.00  0.00              
ATOM      6  CA  PHE    98      55.625 -19.964   8.581  1.00  0.00              
ATOM      7  C   PHE    98      55.556 -20.705   7.250  1.00  0.00              
ATOM      8  O   PHE    98      56.364 -21.563   7.030  1.00  0.00              
ATOM      9  N   CYS    99      54.584 -20.459   6.378  1.00  0.00              
ATOM     10  CA  CYS    99      54.636 -21.191   5.119  1.00  0.00              
ATOM     11  C   CYS    99      55.723 -20.612   4.192  1.00  0.00              
ATOM     12  O   CYS    99      56.471 -21.390   3.570  1.00  0.00              
ATOM     13  N   MET   100      55.902 -19.286   4.142  1.00  0.00              
ATOM     14  CA  MET   100      56.936 -18.800   3.241  1.00  0.00              
ATOM     15  C   MET   100      58.399 -18.721   3.627  1.00  0.00              
ATOM     16  O   MET   100      59.183 -18.195   2.853  1.00  0.00              
ATOM     17  N   GLY   102      58.781 -19.245   4.796  1.00  0.00              
ATOM     18  CA  GLY   102      60.203 -19.295   5.209  1.00  0.00              
ATOM     19  C   GLY   102      60.666 -20.727   4.877  1.00  0.00              
ATOM     20  O   GLY   102      61.841 -20.939   4.508  1.00  0.00              
ATOM     21  N   ALA   103      59.750 -21.704   5.050  1.00  0.00              
ATOM     22  CA  ALA   103      60.076 -23.104   4.805  1.00  0.00              
ATOM     23  C   ALA   103      60.370 -23.301   3.361  1.00  0.00              
ATOM     24  O   ALA   103      61.448 -23.805   3.023  1.00  0.00              
ATOM     25  N   ALA   104      59.445 -22.858   2.508  1.00  0.00              
ATOM     26  CA  ALA   104      59.629 -22.982   1.054  1.00  0.00              
ATOM     27  C   ALA   104      61.047 -22.592   0.530  1.00  0.00              
ATOM     28  O   ALA   104      61.470 -22.993  -0.563  1.00  0.00              
ATOM     29  N   LEU   105      61.793 -21.861   1.352  1.00  0.00              
ATOM     30  CA  LEU   105      63.142 -21.454   1.019  1.00  0.00              
ATOM     31  C   LEU   105      63.931 -22.730   0.988  1.00  0.00              
ATOM     32  O   LEU   105      64.139 -23.336  -0.076  1.00  0.00              
ATOM     33  N   CYS   106      64.218 -23.186   2.209  1.00  0.00              
ATOM     34  CA  CYS   106      65.006 -24.391   2.502  1.00  0.00              
ATOM     35  C   CYS   106      64.658 -25.463   1.494  1.00  0.00              
ATOM     36  O   CYS   106      65.441 -25.717   0.598  1.00  0.00              
ATOM     37  N   ALA   107      63.421 -25.958   1.577  1.00  0.00              
ATOM     38  CA  ALA   107      62.891 -27.002   0.712  1.00  0.00              
ATOM     39  C   ALA   107      63.528 -26.957  -0.656  1.00  0.00              
ATOM     40  O   ALA   107      64.377 -27.791  -0.968  1.00  0.00              
ATOM     41  N   LEU   108      63.226 -25.912  -1.422  1.00  0.00              
ATOM     42  CA  LEU   108      63.751 -25.818  -2.785  1.00  0.00              
ATOM     43  C   LEU   108      65.235 -25.627  -2.763  1.00  0.00              
ATOM     44  O   LEU   108      65.961 -26.228  -3.564  1.00  0.00              
ATOM     45  N   GLY   109      65.685 -24.790  -1.836  1.00  0.00              
ATOM     46  CA  GLY   109      67.096 -24.502  -1.721  1.00  0.00              
ATOM     47  C   GLY   109      67.953 -25.471  -0.884  1.00  0.00              
ATOM     48  O   GLY   109      69.125 -25.190  -0.587  1.00  0.00              
ATOM     49  N   ASP   123      58.975 -34.354   3.718  1.00  0.00              
ATOM     50  CA  ASP   123      59.690 -35.299   2.893  1.00  0.00              
ATOM     51  C   ASP   123      60.983 -34.560   2.546  1.00  0.00              
ATOM     52  O   ASP   123      61.773 -35.036   1.725  1.00  0.00              
ATOM     53  N   ILE   124      61.161 -33.376   3.158  1.00  0.00              
ATOM     54  CA  ILE   124      62.348 -32.515   2.998  1.00  0.00              
ATOM     55  C   ILE   124      63.084 -32.458   4.317  1.00  0.00              
ATOM     56  O   ILE   124      64.244 -32.835   4.358  1.00  0.00              
ATOM     57  N   LEU   125      62.383 -32.068   5.396  1.00  0.00              
ATOM     58  CA  LEU   125      62.972 -31.928   6.742  1.00  0.00              
ATOM     59  C   LEU   125      63.929 -33.049   7.000  1.00  0.00              
ATOM     60  O   LEU   125      64.830 -32.971   7.843  1.00  0.00              
ATOM     61  N   TRP   126      63.610 -34.133   6.332  1.00  0.00              
ATOM     62  CA  TRP   126      64.401 -35.300   6.333  1.00  0.00              
ATOM     63  C   TRP   126      65.777 -34.749   5.961  1.00  0.00              
ATOM     64  O   TRP   126      66.652 -34.621   6.811  1.00  0.00              
ATOM     65  N   GLU   127      65.948 -34.344   4.715  1.00  0.00              
ATOM     66  CA  GLU   127      67.234 -33.820   4.314  1.00  0.00              
ATOM     67  C   GLU   127      67.542 -32.441   4.938  1.00  0.00              
ATOM     68  O   GLU   127      68.466 -32.328   5.730  1.00  0.00              
ATOM     69  N   HIS   128      66.749 -31.425   4.617  1.00  0.00              
ATOM     70  CA  HIS   128      66.933 -30.047   5.106  1.00  0.00              
ATOM     71  C   HIS   128      68.079 -29.838   6.063  1.00  0.00              
ATOM     72  O   HIS   128      69.232 -29.657   5.625  1.00  0.00              
ATOM     73  N   LEU   129      67.742 -29.978   7.356  1.00  0.00              
ATOM     74  CA  LEU   129      68.627 -29.819   8.533  1.00  0.00              
ATOM     75  C   LEU   129      70.124 -29.955   8.226  1.00  0.00              
ATOM     76  O   LEU   129      70.901 -29.008   8.438  1.00  0.00              
ATOM     77  N   GLU   130      70.473 -31.134   7.693  1.00  0.00              
ATOM     78  CA  GLU   130      71.812 -31.556   7.261  1.00  0.00              
ATOM     79  C   GLU   130      72.741 -30.415   6.817  1.00  0.00              
ATOM     80  O   GLU   130      73.564 -29.967   7.621  1.00  0.00              
ATOM     81  N   ILE   131      72.573 -29.904   5.592  1.00  0.00              
ATOM     82  CA  ILE   131      73.449 -28.840   5.070  1.00  0.00              
ATOM     83  C   ILE   131      73.710 -27.771   6.126  1.00  0.00              
ATOM     84  O   ILE   131      74.852 -27.386   6.347  1.00  0.00              
ATOM     85  N   LEU   132      72.653 -27.366   6.829  1.00  0.00              
ATOM     86  CA  LEU   132      72.745 -26.330   7.851  1.00  0.00              
ATOM     87  C   LEU   132      73.657 -26.678   9.036  1.00  0.00              
ATOM     88  O   LEU   132      74.374 -25.826   9.551  1.00  0.00              
ATOM     89  N   GLN   133      73.647 -27.921   9.487  1.00  0.00              
ATOM     90  CA  GLN   133      74.517 -28.258  10.595  1.00  0.00              
ATOM     91  C   GLN   133      75.940 -28.160  10.049  1.00  0.00              
ATOM     92  O   GLN   133      76.701 -27.262  10.449  1.00  0.00              
END
