REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0075AL009_5 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : XU-YING 
REMARK  ---------------------------------------------------------- 
TARGET T0075  
AUTHOR 4798-1984-8383  
REMARK CASP-3 target T0075, Ets-1 (fragment)  
REMARK  
METHOD This prediction is based, in part, on a threading algorithm described in  
METHOD three publications:  
METHOD (i) "An Efficient Computational Method for Globally Optimal Threading",  
METHOD by Y. Xu, D. Xu, and E.C. Uberbacher, Journal of Computational Biology,   
METHOD Vol. 5(3), pp. 609-626, 1998.  
METHOD (ii) "A New Method for Modeling and Solving the Protein Fold Recognition  
METHOD Problem", by Y. Xu, D. Xu, and E.C. Uberbacher, Proc. of RECOMB 98  
METHOD Second Annual Int'l Conf. on Computational Molecular Biology  
METHOD March 22-25, 1998, NEW York, NY, ACM Press, pp. 285-292.  
METHOD (iii) "A polynomial-time algorithm for a class of protein threading  
METHOD problems", by Ying Xu and Edward C. Uberbacher, CABIOS, Vol. 12 (6),  
METHOD pp.511-517, 1996.  
METHOD  
METHOD  
METHOD The prediction is also based, in part, on a different threading algorithm  
METHOD described in the following publication:  
METHOD (iv) "A fast, reliable method for threading", by O.H. Crawford, submitted  
METHOD to Bioinformatics (journal)  
METHOD  
METHOD  
METHOD The energy model employed in the threading is based on improvements and  
METHOD extensions of the energy modeling described in Refs. (ii) and (iii)  
METHOD and in the following paper:  
METHOD (v) "Protein Fold Recognition at the Secondary Structure Level",  
METHOD by D. Xu, M.A. Unseren, Y. Xu, and E.C. Uberbacher, Submitted.  
METHOD  
METHOD  
METHOD  
METHOD Members of Oak Ridge National Laboratory's Computational Biosciences  
METHOD Section participating in CASP3  include (in alphabetical order):  
METHOD Oakley Crawford, J. Ralph Einstein, Frank W. Larimer, Richard Mural,  
METHOD Edward C. Uberbacher, Michael A. Unseren, Dong Xu, Ying Xu, and Ge Zhang  
MODEL  5   
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1urn_A 
ATOM      1  N   VAL    34      30.809  24.728  28.291  1.00  0.00              
ATOM      2  CA  VAL    34      30.681  25.425  29.558  1.00  0.00              
ATOM      3  C   VAL    34      31.916  25.314  30.454  1.00  0.00              
ATOM      4  O   VAL    34      32.475  24.224  30.658  1.00  0.00              
ATOM      5  N   PRO    35      32.325  26.484  30.976  1.00  0.00              
ATOM      6  CA  PRO    35      33.451  26.502  31.908  1.00  0.00              
ATOM      7  C   PRO    35      32.799  26.674  33.298  1.00  0.00              
ATOM      8  O   PRO    35      31.802  27.393  33.463  1.00  0.00              
ATOM      9  N   LEU    36      33.360  25.983  34.276  1.00  0.00              
ATOM     10  CA  LEU    36      32.881  26.018  35.659  1.00  0.00              
ATOM     11  C   LEU    36      33.938  26.789  36.460  1.00  0.00              
ATOM     12  O   LEU    36      35.110  26.384  36.508  1.00  0.00              
ATOM     13  N   LEU    37      33.540  27.930  37.008  1.00  0.00              
ATOM     14  CA  LEU    37      34.476  28.755  37.789  1.00  0.00              
ATOM     15  C   LEU    37      34.130  28.699  39.273  1.00  0.00              
ATOM     16  O   LEU    37      32.943  28.807  39.611  1.00  0.00              
ATOM     17  N   THR    38      35.107  28.522  40.160  1.00  0.00              
ATOM     18  CA  THR    38      34.825  28.501  41.611  1.00  0.00              
ATOM     19  C   THR    38      35.935  29.329  42.277  1.00  0.00              
ATOM     20  O   THR    38      36.738  29.984  41.567  1.00  0.00              
ATOM     21  N   LYS    42      25.012  38.630  42.564  1.00  0.00              
ATOM     22  CA  LYS    42      24.672  37.996  41.316  1.00  0.00              
ATOM     23  C   LYS    42      24.670  38.872  40.079  1.00  0.00              
ATOM     24  O   LYS    42      25.311  38.453  39.115  1.00  0.00              
ATOM     25  N   GLU    43      24.012  40.027  40.060  1.00  0.00              
ATOM     26  CA  GLU    43      24.001  40.887  38.878  1.00  0.00              
ATOM     27  C   GLU    43      25.378  41.422  38.553  1.00  0.00              
ATOM     28  O   GLU    43      25.810  41.384  37.378  1.00  0.00              
ATOM     29  N   MET    44      26.097  41.908  39.557  1.00  0.00              
ATOM     30  CA  MET    44      27.428  42.415  39.278  1.00  0.00              
ATOM     31  C   MET    44      28.396  41.318  38.816  1.00  0.00              
ATOM     32  O   MET    44      29.241  41.568  37.949  1.00  0.00              
ATOM     33  N   MET    45      28.304  40.153  39.442  1.00  0.00              
ATOM     34  CA  MET    45      29.177  39.030  39.089  1.00  0.00              
ATOM     35  C   MET    45      28.959  38.611  37.631  1.00  0.00              
ATOM     36  O   MET    45      29.934  38.460  36.897  1.00  0.00              
ATOM     37  N   SER    46      27.717  38.442  37.192  1.00  0.00              
ATOM     38  CA  SER    46      27.381  38.062  35.826  1.00  0.00              
ATOM     39  C   SER    46      27.871  39.118  34.836  1.00  0.00              
ATOM     40  O   SER    46      28.411  38.846  33.759  1.00  0.00              
ATOM     41  N   GLN    47      27.697  40.396  35.207  1.00  0.00              
ATOM     42  CA  GLN    47      28.137  41.471  34.342  1.00  0.00              
ATOM     43  C   GLN    47      29.657  41.535  34.209  1.00  0.00              
ATOM     44  O   GLN    47      30.187  41.794  33.119  1.00  0.00              
ATOM     45  N   ALA    48      30.392  41.365  35.297  1.00  0.00              
ATOM     46  CA  ALA    48      31.836  41.376  35.324  1.00  0.00              
ATOM     47  C   ALA    48      32.363  40.127  34.598  1.00  0.00              
ATOM     48  O   ALA    48      33.366  40.278  33.899  1.00  0.00              
ATOM     49  N   LEU    49      31.703  38.999  34.768  1.00  0.00              
ATOM     50  CA  LEU    49      32.132  37.767  34.104  1.00  0.00              
ATOM     51  C   LEU    49      31.926  37.924  32.597  1.00  0.00              
ATOM     52  O   LEU    49      32.801  37.559  31.801  1.00  0.00              
ATOM     53  N   LYS    50      30.785  38.477  32.183  1.00  0.00              
ATOM     54  CA  LYS    50      30.528  38.694  30.759  1.00  0.00              
ATOM     55  C   LYS    50      31.555  39.628  30.124  1.00  0.00              
ATOM     56  O   LYS    50      32.114  39.401  29.036  1.00  0.00              
ATOM     57  N   ALA    51      31.900  40.724  30.780  1.00  0.00              
ATOM     58  CA  ALA    51      32.869  41.717  30.349  1.00  0.00              
ATOM     59  C   ALA    51      34.270  41.140  30.144  1.00  0.00              
ATOM     60  O   ALA    51      35.014  41.483  29.217  1.00  0.00              
ATOM     61  N   THR    52      34.699  40.243  31.007  1.00  0.00              
ATOM     62  CA  THR    52      35.981  39.556  30.942  1.00  0.00              
ATOM     63  C   THR    52      36.006  38.374  29.971  1.00  0.00              
ATOM     64  O   THR    52      36.974  38.219  29.224  1.00  0.00              
ATOM     65  N   PHE    53      34.998  37.501  29.919  1.00  0.00              
ATOM     66  CA  PHE    53      34.985  36.338  29.062  1.00  0.00              
ATOM     67  C   PHE    53      34.540  36.536  27.629  1.00  0.00              
ATOM     68  O   PHE    53      34.750  35.661  26.769  1.00  0.00              
ATOM     69  N   ARG    62      29.307  34.367  24.300  1.00  0.00              
ATOM     70  CA  ARG    62      28.765  33.737  25.513  1.00  0.00              
ATOM     71  C   ARG    62      27.255  33.528  25.340  1.00  0.00              
ATOM     72  O   ARG    62      26.543  34.490  25.022  1.00  0.00              
ATOM     73  N   LEU    63      26.753  32.316  25.528  1.00  0.00              
ATOM     74  CA  LEU    63      25.336  32.026  25.430  1.00  0.00              
ATOM     75  C   LEU    63      24.612  32.444  26.718  1.00  0.00              
ATOM     76  O   LEU    63      23.481  32.962  26.667  1.00  0.00              
ATOM     77  N   GLY    64      25.213  32.266  27.899  1.00  0.00              
ATOM     78  CA  GLY    64      24.582  32.656  29.155  1.00  0.00              
ATOM     79  C   GLY    64      25.588  32.502  30.286  1.00  0.00              
ATOM     80  O   GLY    64      26.619  31.853  30.078  1.00  0.00              
ATOM     81  N   ILE    65      25.298  33.053  31.461  1.00  0.00              
ATOM     82  CA  ILE    65      26.197  32.912  32.609  1.00  0.00              
ATOM     83  C   ILE    65      25.241  32.551  33.753  1.00  0.00              
ATOM     84  O   ILE    65      24.332  33.355  33.974  1.00  0.00              
ATOM     85  N   PRO    66      25.408  31.378  34.347  1.00  0.00              
ATOM     86  CA  PRO    66      24.541  30.945  35.434  1.00  0.00              
ATOM     87  C   PRO    66      25.238  31.156  36.772  1.00  0.00              
ATOM     88  O   PRO    66      26.349  30.684  37.030  1.00  0.00              
ATOM     89  N   LYS    67      24.583  31.922  37.646  1.00  0.00              
ATOM     90  CA  LYS    67      25.062  32.276  38.977  1.00  0.00              
ATOM     91  C   LYS    67      23.913  32.092  39.986  1.00  0.00              
ATOM     92  O   LYS    67      22.767  32.503  39.762  1.00  0.00              
ATOM     93  N   MET    82      30.246  29.870  39.282  1.00  0.00              
ATOM     94  CA  MET    82      29.599  30.381  38.080  1.00  0.00              
ATOM     95  C   MET    82      29.836  29.440  36.886  1.00  0.00              
ATOM     96  O   MET    82      30.838  28.720  36.796  1.00  0.00              
ATOM     97  N   TRP    83      28.875  29.366  35.983  1.00  0.00              
ATOM     98  CA  TRP    83      28.896  28.565  34.761  1.00  0.00              
ATOM     99  C   TRP    83      28.874  29.558  33.584  1.00  0.00              
ATOM    100  O   TRP    83      27.877  30.297  33.434  1.00  0.00              
ATOM    101  N   ALA    84      29.937  29.621  32.782  1.00  0.00              
ATOM    102  CA  ALA    84      29.969  30.537  31.635  1.00  0.00              
ATOM    103  C   ALA    84      29.787  29.615  30.414  1.00  0.00              
ATOM    104  O   ALA    84      30.589  28.698  30.195  1.00  0.00              
ATOM    105  N   VAL    85      28.690  29.737  29.672  1.00  0.00              
ATOM    106  CA  VAL    85      28.351  28.883  28.525  1.00  0.00              
ATOM    107  C   VAL    85      28.766  29.544  27.217  1.00  0.00              
ATOM    108  O   VAL    85      28.222  30.609  26.887  1.00  0.00              
ATOM    109  N   ASN    86      29.722  28.929  26.509  1.00  0.00              
ATOM    110  CA  ASN    86      30.174  29.533  25.254  1.00  0.00              
ATOM    111  C   ASN    86      29.452  28.847  24.090  1.00  0.00              
ATOM    112  O   ASN    86      29.078  27.662  24.212  1.00  0.00              
ATOM    113  N   PHE    98      33.042  25.290  21.770  1.00  0.00              
ATOM    114  CA  PHE    98      33.949  24.665  22.735  1.00  0.00              
ATOM    115  C   PHE    98      35.324  25.303  22.665  1.00  0.00              
ATOM    116  O   PHE    98      36.016  25.484  23.672  1.00  0.00              
ATOM    117  N   CYS    99      35.767  25.704  21.461  1.00  0.00              
ATOM    118  CA  CYS    99      37.053  26.367  21.270  1.00  0.00              
ATOM    119  C   CYS    99      37.160  27.634  22.118  1.00  0.00              
ATOM    120  O   CYS    99      38.252  27.933  22.630  1.00  0.00              
ATOM    121  N   MET   100      36.086  28.401  22.272  1.00  0.00              
ATOM    122  CA  MET   100      36.074  29.621  23.084  1.00  0.00              
ATOM    123  C   MET   100      36.266  29.288  24.570  1.00  0.00              
ATOM    124  O   MET   100      37.024  29.951  25.273  1.00  0.00              
ATOM    125  N   SER   101      35.605  28.236  25.050  1.00  0.00              
ATOM    126  CA  SER   101      35.670  27.735  26.412  1.00  0.00              
ATOM    127  C   SER   101      37.081  27.274  26.741  1.00  0.00              
ATOM    128  O   SER   101      37.613  27.570  27.810  1.00  0.00              
ATOM    129  N   GLY   102      37.718  26.577  25.796  1.00  0.00              
ATOM    130  CA  GLY   102      39.078  26.102  26.009  1.00  0.00              
ATOM    131  C   GLY   102      40.079  27.244  26.141  1.00  0.00              
ATOM    132  O   GLY   102      40.963  27.258  27.007  1.00  0.00              
ATOM    133  N   ALA   103      39.979  28.244  25.258  1.00  0.00              
ATOM    134  CA  ALA   103      40.875  29.387  25.300  1.00  0.00              
ATOM    135  C   ALA   103      40.624  30.207  26.564  1.00  0.00              
ATOM    136  O   ALA   103      41.560  30.670  27.223  1.00  0.00              
ATOM    137  N   ALA   104      39.335  30.347  26.925  1.00  0.00              
ATOM    138  CA  ALA   104      38.937  31.080  28.128  1.00  0.00              
ATOM    139  C   ALA   104      39.548  30.415  29.373  1.00  0.00              
ATOM    140  O   ALA   104      40.124  31.115  30.223  1.00  0.00              
ATOM    141  N   LEU   105      39.427  29.080  29.447  1.00  0.00              
ATOM    142  CA  LEU   105      39.962  28.314  30.560  1.00  0.00              
ATOM    143  C   LEU   105      41.474  28.512  30.688  1.00  0.00              
ATOM    144  O   LEU   105      42.026  28.939  31.712  1.00  0.00              
ATOM    145  N   CYS   106      42.213  28.215  29.621  1.00  0.00              
ATOM    146  CA  CYS   106      43.650  28.330  29.639  1.00  0.00              
ATOM    147  C   CYS   106      44.147  29.730  29.941  1.00  0.00              
ATOM    148  O   CYS   106      45.136  29.956  30.683  1.00  0.00              
ATOM    149  N   ALA   107      43.490  30.754  29.388  1.00  0.00              
ATOM    150  CA  ALA   107      43.898  32.139  29.553  1.00  0.00              
ATOM    151  C   ALA   107      43.587  32.814  30.892  1.00  0.00              
ATOM    152  O   ALA   107      44.391  33.569  31.454  1.00  0.00              
ATOM    153  N   LEU   108      42.372  32.601  31.373  1.00  0.00              
ATOM    154  CA  LEU   108      41.870  33.184  32.624  1.00  0.00              
ATOM    155  C   LEU   108      42.135  32.338  33.856  1.00  0.00              
ATOM    156  O   LEU   108      41.840  32.819  34.965  1.00  0.00              
ATOM    157  N   ASP   123      39.350  30.009  39.798  1.00  0.00              
ATOM    158  CA  ASP   123      39.734  28.613  39.571  1.00  0.00              
ATOM    159  C   ASP   123      38.783  28.107  38.500  1.00  0.00              
ATOM    160  O   ASP   123      37.572  28.207  38.689  1.00  0.00              
ATOM    161  N   ILE   124      39.325  27.638  37.370  1.00  0.00              
ATOM    162  CA  ILE   124      38.464  27.220  36.270  1.00  0.00              
ATOM    163  C   ILE   124      38.617  25.795  35.782  1.00  0.00              
ATOM    164  O   ILE   124      39.719  25.246  35.605  1.00  0.00              
ATOM    165  N   LEU   125      37.470  25.132  35.558  1.00  0.00              
ATOM    166  CA  LEU   125      37.443  23.778  35.040  1.00  0.00              
ATOM    167  C   LEU   125      36.372  23.790  33.927  1.00  0.00              
ATOM    168  O   LEU   125      35.705  24.810  33.732  1.00  0.00              
ATOM    169  N   TRP   126      36.245  22.659  33.247  1.00  0.00              
ATOM    170  CA  TRP   126      35.185  22.575  32.255  1.00  0.00              
ATOM    171  C   TRP   126      33.975  22.025  33.050  1.00  0.00              
ATOM    172  O   TRP   126      34.247  21.293  34.023  1.00  0.00              
ATOM    173  N   GLU   130      22.002  22.655  29.883  1.00  0.00              
ATOM    174  CA  GLU   130      20.781  22.325  29.148  1.00  0.00              
ATOM    175  C   GLU   130      20.661  23.057  27.828  1.00  0.00              
ATOM    176  O   GLU   130      20.207  22.490  26.829  1.00  0.00              
ATOM    177  N   ILE   131      21.054  24.312  27.754  1.00  0.00              
ATOM    178  CA  ILE   131      21.005  25.128  26.548  1.00  0.00              
ATOM    179  C   ILE   131      21.805  24.461  25.429  1.00  0.00              
ATOM    180  O   ILE   131      21.434  24.486  24.271  1.00  0.00              
ATOM    181  N   LEU   132      22.930  23.889  25.804  1.00  0.00              
ATOM    182  CA  LEU   132      23.838  23.218  24.903  1.00  0.00              
ATOM    183  C   LEU   132      23.279  21.853  24.543  1.00  0.00              
ATOM    184  O   LEU   132      23.335  21.457  23.379  1.00  0.00              
ATOM    185  N   GLN   133      22.727  21.175  25.552  1.00  0.00              
ATOM    186  CA  GLN   133      22.147  19.853  25.408  1.00  0.00              
ATOM    187  C   GLN   133      20.909  19.814  24.512  1.00  0.00              
ATOM    188  O   GLN   133      20.574  18.738  23.987  1.00  0.00              
ATOM    189  N   LYS   134      20.224  20.936  24.297  1.00  0.00              
ATOM    190  CA  LYS   134      19.050  20.920  23.420  1.00  0.00              
ATOM    191  C   LYS   134      19.520  21.131  21.978  1.00  0.00              
ATOM    192  O   LYS   134      18.949  20.543  21.047  1.00  0.00              
END
