REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0073AL076_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : BASS-MICHAEL 
REMARK  ---------------------------------------------------------- 
TARGET T0073  
AUTHOR 6795-8227-6214  
REMARK CASP3 Prediction by Michael Bass on 7/22/98  
METHOD AmgenThread.  Gapped alignments with no end penalties.  
METHOD Uses residue-based statistical potentials.  Specific  
METHOD potentials include exposed surface area, inter-residue  
METHOD distance-dependent contacts, and backbone dihedral  
METHOD angle preferences.  The search database is against the  
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or  
METHOD less level containing 1,329 domain-based structures.  
METHOD This is an automatic prediction method.  
REMARK Results from database search:  
REMARK Sequence "t0073" has a significant match  
REMARK 2tct_a        6.211     0.420    18.132  MOLECULE: TETRACYCLINE REPRESSOR;  
REMARK                                          SCOP: Alpha; Tetracyclin repressor (Tet-repressor, TetR)  
REMARK 1dkxAb_A      5.714     0.392    23.794  MOLECULE: SUBSTRATE BINDING DOMAIN OF DNAK;  
REMARK 1bcrAb_A      4.870     0.343    10.092  MOLECULE: SERINE CARBOXYPEPTIDASE II;  
REMARK 1hloAa_A      4.676     0.332    20.084  MOLECULE: TRANSCRIPTION FACTOR MAX;  
REMARK 1bfrAb_A      4.653     0.331    17.620  MOLECULE: BACTERIOFERRITIN;  
REMARK 2fha_b        4.375     0.315     9.744  MOLECULE: FERRITIN;  
REMARK 1ns1Aa_A      4.297     0.311    16.931  MOLECULE: NONSTRUCTURAL PROTEIN 1;  
REMARK 1pbwAc_A      4.285     0.310    11.912  MOLECULE: PHOSPHATIDYLINOSITOL 3-KINASE;  
REMARK 1efuBa_B      4.062     0.297    13.390  MOLECULE: ELONGATION FACTOR TU;  
REMARK pdb1edi       3.971     0.292    17.716  MOLECULE: STAPHYLOCOCCAL PROTEIN A;  
REMARK pdb1idy       3.945     0.291     8.877  MOLECULE: MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3;  
REMARK 1serAa_A      3.859     0.286    11.165  SERYL-TRNA SYNTHETASE (E.C.6.1.1.11) COMPLEXED WITH  
REMARK pdb3flx       3.768     0.281    19.462  FELIX (DE NOVO DESIGNED PROTEIN) (MODEL 2) (THEORETICAL  
REMARK 1yrnBa_B      3.693     0.276     5.456  MOLECULE: MATING-TYPE PROTEIN A-1;  
REMARK                                          SCOP: Alpha; DNA-binding 3-helical bundle  
REMARK pdb1mlp_A     3.472     0.264    14.829  MUREIN LIPOPROTEIN (THEORETICAL MODEL)  
REMARK pdb1atf       3.436     0.262     9.046  ANTIFREEZE POLYPEPTIDE (APF) (THEORETICAL MODEL)  
REMARK pdb1lea       3.429     0.261     6.287  LEXA REPRESSOR DNA BINDING DOMAIN  
REMARK pdb1szt       3.372     0.258    14.817  MOLECULE: HIV-1 ENVELOPE GLYCOPROTEIN GP41;  
MODEL  1  
REMARK Sequence alignment follows:  
REMARK t0073        .......SLAALKSELQALKKEGFSPEELAA.LESELQALEKKLAALKSK  
REMARK                      ::||..#::#  :|.|::|||:: |..:#::|||:|:. : #  
REMARK 2tct_a       ARLNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRAL  
REMARK   
REMARK t0073        LQALKG  
REMARK              ||.|    
REMARK 2tct_a       LDAL..  
REMARK   
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 2tct 
ATOM      1  N   SER     1      13.354  25.884  13.779  1.00  0.00              
ATOM      2  CA  SER     1      14.549  26.629  13.423  1.00  0.00              
ATOM      3  C   SER     1      15.516  26.588  14.625  1.00  0.00              
ATOM      4  O   SER     1      16.692  26.253  14.433  1.00  0.00              
ATOM      5  N   LEU     2      15.093  26.875  15.883  1.00  0.00              
ATOM      6  CA  LEU     2      15.950  26.809  17.093  1.00  0.00              
ATOM      7  C   LEU     2      16.502  25.396  17.208  1.00  0.00              
ATOM      8  O   LEU     2      17.705  25.250  17.341  1.00  0.00              
ATOM      9  N   ALA     3      15.723  24.325  17.116  1.00  0.00              
ATOM     10  CA  ALA     3      16.273  22.986  17.083  1.00  0.00              
ATOM     11  C   ALA     3      17.345  22.708  16.042  1.00  0.00              
ATOM     12  O   ALA     3      18.382  22.157  16.368  1.00  0.00              
ATOM     13  N   ALA     4      17.229  23.059  14.772  1.00  0.00              
ATOM     14  CA  ALA     4      18.260  22.781  13.789  1.00  0.00              
ATOM     15  C   ALA     4      19.493  23.608  14.084  1.00  0.00              
ATOM     16  O   ALA     4      20.616  23.161  13.843  1.00  0.00              
ATOM     17  N   LEU     5      19.315  24.844  14.616  1.00  0.00              
ATOM     18  CA  LEU     5      20.417  25.757  14.937  1.00  0.00              
ATOM     19  C   LEU     5      21.189  25.221  16.135  1.00  0.00              
ATOM     20  O   LEU     5      22.404  25.223  16.135  1.00  0.00              
ATOM     21  N   LYS     6      20.576  24.642  17.149  1.00  0.00              
ATOM     22  CA  LYS     6      21.293  24.035  18.264  1.00  0.00              
ATOM     23  C   LYS     6      22.086  22.833  17.798  1.00  0.00              
ATOM     24  O   LYS     6      23.234  22.600  18.166  1.00  0.00              
ATOM     25  N   SER     7      21.472  22.052  16.918  1.00  0.00              
ATOM     26  CA  SER     7      22.049  20.885  16.318  1.00  0.00              
ATOM     27  C   SER     7      23.258  21.324  15.568  1.00  0.00              
ATOM     28  O   SER     7      24.357  20.779  15.788  1.00  0.00              
ATOM     29  N   GLU     8      23.103  22.364  14.750  1.00  0.00              
ATOM     30  CA  GLU     8      24.221  22.861  13.984  1.00  0.00              
ATOM     31  C   GLU     8      25.294  23.439  14.920  1.00  0.00              
ATOM     32  O   GLU     8      26.491  23.323  14.606  1.00  0.00              
ATOM     33  N   LEU     9      25.000  24.097  16.058  1.00  0.00              
ATOM     34  CA  LEU     9      26.025  24.674  16.937  1.00  0.00              
ATOM     35  C   LEU     9      26.880  23.526  17.460  1.00  0.00              
ATOM     36  O   LEU     9      28.099  23.664  17.461  1.00  0.00              
ATOM     37  N   GLN    10      26.318  22.375  17.848  1.00  0.00              
ATOM     38  CA  GLN    10      27.120  21.237  18.270  1.00  0.00              
ATOM     39  C   GLN    10      28.089  20.695  17.231  1.00  0.00              
ATOM     40  O   GLN    10      29.213  20.280  17.528  1.00  0.00              
ATOM     41  N   ALA    11      27.662  20.692  15.959  1.00  0.00              
ATOM     42  CA  ALA    11      28.515  20.283  14.852  1.00  0.00              
ATOM     43  C   ALA    11      29.575  21.300  14.457  1.00  0.00              
ATOM     44  O   ALA    11      30.698  20.937  14.165  1.00  0.00              
ATOM     45  N   LEU    12      29.272  22.575  14.360  1.00  0.00              
ATOM     46  CA  LEU    12      30.210  23.553  13.860  1.00  0.00              
ATOM     47  C   LEU    12      30.837  24.507  14.875  1.00  0.00              
ATOM     48  O   LEU    12      31.825  25.196  14.596  1.00  0.00              
ATOM     49  N   LYS    13      30.225  24.675  16.046  1.00  0.00              
ATOM     50  CA  LYS    13      30.628  25.756  16.912  1.00  0.00              
ATOM     51  C   LYS    13      30.088  27.060  16.392  1.00  0.00              
ATOM     52  O   LYS    13      29.553  27.221  15.309  1.00  0.00              
ATOM     53  N   LYS    14      30.379  28.084  17.161  1.00  0.00              
ATOM     54  CA  LYS    14      29.723  29.333  16.945  1.00  0.00              
ATOM     55  C   LYS    14      30.259  30.137  15.788  1.00  0.00              
ATOM     56  O   LYS    14      29.567  30.988  15.242  1.00  0.00              
ATOM     57  N   GLU    15      31.496  29.908  15.392  1.00  0.00              
ATOM     58  CA  GLU    15      32.038  30.725  14.305  1.00  0.00              
ATOM     59  C   GLU    15      31.646  30.053  12.982  1.00  0.00              
ATOM     60  O   GLU    15      31.588  30.680  11.929  1.00  0.00              
ATOM     61  N   GLY    16      31.329  28.767  13.014  1.00  0.00              
ATOM     62  CA  GLY    16      30.944  28.068  11.803  1.00  0.00              
ATOM     63  C   GLY    16      29.448  28.025  11.713  1.00  0.00              
ATOM     64  O   GLY    16      28.912  27.356  10.824  1.00  0.00              
ATOM     65  N   PHE    17      28.741  28.696  12.610  1.00  0.00              
ATOM     66  CA  PHE    17      27.305  28.715  12.515  1.00  0.00              
ATOM     67  C   PHE    17      26.990  29.979  11.720  1.00  0.00              
ATOM     68  O   PHE    17      27.360  31.087  12.080  1.00  0.00              
ATOM     69  N   SER    18      26.366  29.813  10.555  1.00  0.00              
ATOM     70  CA  SER    18      25.975  30.931   9.703  1.00  0.00              
ATOM     71  C   SER    18      24.563  30.684   9.190  1.00  0.00              
ATOM     72  O   SER    18      24.168  29.505   9.088  1.00  0.00              
ATOM     73  N   PRO    19      23.811  31.696   8.790  1.00  0.00              
ATOM     74  CA  PRO    19      22.514  31.467   8.179  1.00  0.00              
ATOM     75  C   PRO    19      22.698  30.661   6.883  1.00  0.00              
ATOM     76  O   PRO    19      21.878  29.770   6.640  1.00  0.00              
ATOM     77  N   GLU    20      23.790  30.769   6.074  1.00  0.00              
ATOM     78  CA  GLU    20      23.984  29.930   4.866  1.00  0.00              
ATOM     79  C   GLU    20      24.137  28.509   5.268  1.00  0.00              
ATOM     80  O   GLU    20      23.456  27.667   4.707  1.00  0.00              
ATOM     81  N   GLU    21      24.945  28.164   6.255  1.00  0.00              
ATOM     82  CA  GLU    21      24.934  26.766   6.698  1.00  0.00              
ATOM     83  C   GLU    21      23.580  26.315   7.289  1.00  0.00              
ATOM     84  O   GLU    21      23.139  25.162   7.103  1.00  0.00              
ATOM     85  N   LEU    22      22.844  27.175   8.000  1.00  0.00              
ATOM     86  CA  LEU    22      21.596  26.737   8.578  1.00  0.00              
ATOM     87  C   LEU    22      20.586  26.474   7.482  1.00  0.00              
ATOM     88  O   LEU    22      19.858  25.488   7.605  1.00  0.00              
ATOM     89  N   ALA    23      20.508  27.306   6.418  1.00  0.00              
ATOM     90  CA  ALA    23      19.571  27.100   5.301  1.00  0.00              
ATOM     91  C   ALA    23      19.856  25.734   4.666  1.00  0.00              
ATOM     92  O   ALA    23      18.969  24.869   4.533  1.00  0.00              
ATOM     93  N   ALA    24      21.114  25.435   4.347  1.00  0.00              
ATOM     94  CA  ALA    24      21.471  24.112   3.830  1.00  0.00              
ATOM     95  C   ALA    24      21.062  22.976   4.794  1.00  0.00              
ATOM     96  O   ALA    24      20.487  21.977   4.346  1.00  0.00              
ATOM     97  N   LEU    25      18.615  22.995   6.860  1.00  0.00              
ATOM     98  CA  LEU    25      17.174  22.910   6.784  1.00  0.00              
ATOM     99  C   LEU    25      16.707  22.563   5.369  1.00  0.00              
ATOM    100  O   LEU    25      15.505  22.335   5.165  1.00  0.00              
ATOM    101  N   GLU    26      17.616  22.546   4.387  1.00  0.00              
ATOM    102  CA  GLU    26      17.304  22.181   3.012  1.00  0.00              
ATOM    103  C   GLU    26      16.381  23.199   2.342  1.00  0.00              
ATOM    104  O   GLU    26      15.400  22.837   1.710  1.00  0.00              
ATOM    105  N   SER    27      16.637  24.484   2.548  1.00  0.00              
ATOM    106  CA  SER    27      15.824  25.533   1.963  1.00  0.00              
ATOM    107  C   SER    27      16.865  26.509   1.485  1.00  0.00              
ATOM    108  O   SER    27      18.058  26.447   1.829  1.00  0.00              
ATOM    109  N   GLU    28      16.338  27.405   0.673  1.00  0.00              
ATOM    110  CA  GLU    28      17.077  28.488   0.090  1.00  0.00              
ATOM    111  C   GLU    28      17.238  29.579   1.127  1.00  0.00              
ATOM    112  O   GLU    28      16.360  29.851   1.954  1.00  0.00              
ATOM    113  N   LEU    29      18.302  30.346   1.017  1.00  0.00              
ATOM    114  CA  LEU    29      18.502  31.427   1.961  1.00  0.00              
ATOM    115  C   LEU    29      17.431  32.518   1.987  1.00  0.00              
ATOM    116  O   LEU    29      17.204  33.002   3.089  1.00  0.00              
ATOM    117  N   GLN    30      16.699  32.950   0.933  1.00  0.00              
ATOM    118  CA  GLN    30      15.554  33.862   1.047  1.00  0.00              
ATOM    119  C   GLN    30      14.409  33.303   1.885  1.00  0.00              
ATOM    120  O   GLN    30      13.709  34.024   2.602  1.00  0.00              
ATOM    121  N   ALA    31      14.245  31.986   1.786  1.00  0.00              
ATOM    122  CA  ALA    31      13.246  31.328   2.599  1.00  0.00              
ATOM    123  C   ALA    31      13.694  31.473   4.039  1.00  0.00              
ATOM    124  O   ALA    31      12.898  31.953   4.851  1.00  0.00              
ATOM    125  N   LEU    32      14.960  31.164   4.360  1.00  0.00              
ATOM    126  CA  LEU    32      15.460  31.345   5.727  1.00  0.00              
ATOM    127  C   LEU    32      15.329  32.796   6.235  1.00  0.00              
ATOM    128  O   LEU    32      14.779  33.016   7.314  1.00  0.00              
ATOM    129  N   GLU    33      15.725  33.797   5.457  1.00  0.00              
ATOM    130  CA  GLU    33      15.603  35.199   5.795  1.00  0.00              
ATOM    131  C   GLU    33      14.221  35.615   6.276  1.00  0.00              
ATOM    132  O   GLU    33      14.077  36.545   7.054  1.00  0.00              
ATOM    133  N   LYS    34      13.168  35.044   5.727  1.00  0.00              
ATOM    134  CA  LYS    34      11.840  35.396   6.148  1.00  0.00              
ATOM    135  C   LYS    34      11.676  35.052   7.651  1.00  0.00              
ATOM    136  O   LYS    34      11.000  35.714   8.409  1.00  0.00              
ATOM    137  N   LYS    35      12.289  34.006   8.116  1.00  0.00              
ATOM    138  CA  LYS    35      12.157  33.493   9.451  1.00  0.00              
ATOM    139  C   LYS    35      13.198  34.032  10.399  1.00  0.00              
ATOM    140  O   LYS    35      12.854  34.447  11.485  1.00  0.00              
ATOM    141  N   LEU    36      14.483  34.013  10.025  1.00  0.00              
ATOM    142  CA  LEU    36      15.637  34.387  10.846  1.00  0.00              
ATOM    143  C   LEU    36      16.283  35.574  10.124  1.00  0.00              
ATOM    144  O   LEU    36      16.893  35.371   9.073  1.00  0.00              
ATOM    145  N   ALA    37      16.250  36.801  10.607  1.00  0.00              
ATOM    146  CA  ALA    37      16.869  37.908   9.911  1.00  0.00              
ATOM    147  C   ALA    37      18.395  37.868   9.868  1.00  0.00              
ATOM    148  O   ALA    37      18.980  38.292   8.863  1.00  0.00              
ATOM    149  N   ALA    38      19.090  37.418  10.922  1.00  0.00              
ATOM    150  CA  ALA    38      20.552  37.412  10.943  1.00  0.00              
ATOM    151  C   ALA    38      21.139  36.541  12.036  1.00  0.00              
ATOM    152  O   ALA    38      20.422  36.013  12.899  1.00  0.00              
ATOM    153  N   LEU    39      22.466  36.377  11.961  1.00  0.00              
ATOM    154  CA  LEU    39      23.146  35.619  12.999  1.00  0.00              
ATOM    155  C   LEU    39      22.967  36.215  14.421  1.00  0.00              
ATOM    156  O   LEU    39      22.775  35.447  15.345  1.00  0.00              
ATOM    157  N   LYS    40      22.932  37.510  14.707  1.00  0.00              
ATOM    158  CA  LYS    40      22.744  38.021  16.073  1.00  0.00              
ATOM    159  C   LYS    40      21.379  37.622  16.611  1.00  0.00              
ATOM    160  O   LYS    40      21.276  37.246  17.778  1.00  0.00              
ATOM    161  N   SER    41      20.319  37.726  15.790  1.00  0.00              
ATOM    162  CA  SER    41      18.955  37.373  16.143  1.00  0.00              
ATOM    163  C   SER    41      18.908  35.927  16.555  1.00  0.00              
ATOM    164  O   SER    41      18.268  35.567  17.531  1.00  0.00              
ATOM    165  N   LYS    42      19.635  35.106  15.816  1.00  0.00              
ATOM    166  CA  LYS    42      19.721  33.693  16.093  1.00  0.00              
ATOM    167  C   LYS    42      20.492  33.430  17.396  1.00  0.00              
ATOM    168  O   LYS    42      19.993  32.734  18.271  1.00  0.00              
ATOM    169  N   LEU    43      21.685  33.969  17.594  1.00  0.00              
ATOM    170  CA  LEU    43      22.423  33.742  18.801  1.00  0.00              
ATOM    171  C   LEU    43      21.631  34.308  19.952  1.00  0.00              
ATOM    172  O   LEU    43      21.492  33.588  20.932  1.00  0.00              
ATOM    173  N   GLN    44      20.984  35.455  19.852  1.00  0.00              
ATOM    174  CA  GLN    44      20.156  35.929  20.973  1.00  0.00              
ATOM    175  C   GLN    44      19.085  34.959  21.424  1.00  0.00              
ATOM    176  O   GLN    44      18.930  34.668  22.628  1.00  0.00              
ATOM    177  N   ALA    45      18.441  34.333  20.427  1.00  0.00              
ATOM    178  CA  ALA    45      17.379  33.388  20.734  1.00  0.00              
ATOM    179  C   ALA    45      17.950  32.087  21.270  1.00  0.00              
ATOM    180  O   ALA    45      17.343  31.434  22.118  1.00  0.00              
ATOM    181  N   LEU    46      19.098  31.618  20.783  1.00  0.00              
ATOM    182  CA  LEU    46      19.692  30.395  21.304  1.00  0.00              
ATOM    183  C   LEU    46      20.070  30.646  22.785  1.00  0.00              
ATOM    184  O   LEU    46      19.738  29.811  23.618  1.00  0.00              
END
