PFRMAT SS 
TARGET T0071 
AUTHOR 3403-1625-5531 
METHOD New Joint Method including SSthread 
METHOD (Prediction of protein Secondary Structure using Threading) 
METHOD K. Nishikawa and T. Noguchi:  
METHOD Methods in Enzymology, Vol.202, pp.31-44 (1991).  
METHOD M. Ito, Y. Matsuo and K. Nishikawa:  
METHOD Comput. Appl. Biosci. Vol.13, pp.415-423 (1997). 
MODEL  2 
S C 1.0 
E C 1.0 
D C 1.0 
N C 0.8 
F E 0.2 
A E 0.2 
R E 0.2 
F E 0.6 
V E 0.6 
C C 0.4 
K C 1.0 
N C 1.0 
N C 1.0 
G C 1.0 
V E 0.2 
L E 0.2 
F E 0.2 
E H 0.6 
N H 0.6 
Q H 0.8 
L H 0.8 
L H 0.8 
Q H 0.8 
I H 0.8 
G C 0.8 
L H 0.4 
K H 0.6 
S H 0.6 
E H 0.8 
F H 0.8 
R H 0.8 
Q H 0.8 
N H 0.6 
L H 0.6 
G C 1.0 
R C 0.6 
M E 1.0 
F E 1.0 
I E 1.0 
F E 1.0 
Y E 1.0 
G C 0.8 
N C 1.0 
K C 1.0 
T C 1.0 
S C 1.0 
T E 0.6 
Q E 0.8 
F E 0.8 
L E 0.6 
N C 0.6 
F C 0.6 
T C 0.8 
P C 0.8 
T C 0.6 
L E 0.8 
I E 1.0 
C E 0.8 
A C 0.8 
D C 1.0 
D C 0.8 
L C 0.8 
Q C 0.6 
T C 0.6 
N C 0.8 
L C 0.6 
N C 0.8 
L C 0.8 
Q C 0.8 
T C 1.0 
K C 1.0 
P C 1.0 
V C 1.0 
D C 1.0 
P C 1.0 
T C 1.0 
V C 0.8 
D C 1.0 
G C 1.0 
G C 1.0 
A C 1.0 
Q C 0.8 
V C 0.8 
Q C 0.6 
Q E 0.6 
V E 0.8 
I E 0.8 
N E 0.6 
I E 0.8 
E E 0.8 
C C 0.6 
I C 0.6 
S C 0.8 
D C 1.0 
F C 1.0 
T C 1.0 
E C 1.0 
A C 1.0 
P C 0.8 
V E 0.6 
L E 0.8 
N E 0.6 
I E 0.8 
Q E 0.8 
F E 0.8 
R E 0.8 
Y E 0.6 
G C 0.8 
G C 1.0 
T C 1.0 
F C 0.8 
Q C 0.8 
N E 0.6 
V E 0.8 
S E 0.8 
V E 0.8 
K E 0.6 
L E 0.3 
P C 0.6 
I E 0.3 
T E 0.3 
L E 0.3 
N C 0.8 
K C 0.6 
F C 0.6 
F C 0.8 
Q C 0.8 
P C 1.0 
T C 1.0 
E C 0.8 
M C 0.6 
A H 0.6 
S H 0.6 
Q H 1.0 
D H 1.0 
F H 0.8 
F H 1.0 
Q H 1.0 
R H 1.0 
W H 1.0 
K H 0.6 
Q H 0.6 
L C 1.0 
S C 1.0 
N C 1.0 
P C 0.8 
Q C 0.6 
Q H 0.8 
E H 0.8 
V H 1.0 
Q H 1.0 
N H 1.0 
I H 1.0 
F H 1.0 
K H 0.8 
A H 0.8 
K C 0.8 
H C 0.8 
P C 1.0 
M C 0.8 
D C 0.6 
T C 0.6 
E H 0.6 
I H 0.3 
T H 0.3 
K H 0.4 
A H 0.4 
K H 0.6 
I E 0.8 
I E 0.6 
G E 0.6 
F E 0.3 
G C 0.8 
S C 0.6 
A H 0.6 
L H 0.3 
L H 0.6 
E H 0.6 
E H 0.6 
V C 0.8 
D C 0.8 
P C 1.0 
N C 1.0 
P C 1.0 
A C 1.0 
N C 0.8 
F C 0.3 
V C 0.3 
G C 0.2 
A C 0.2 
G C 0.4 
I E 0.8 
I E 0.8 
H E 0.3 
T C 0.6 
K C 0.8 
T C 1.0 
T C 1.0 
Q C 0.6 
I E 0.3 
G E 0.6 
C E 1.0 
L E 0.8 
L E 0.6 
R E 0.3 
L C 0.6 
E C 0.8 
P C 0.8 
N C 0.8 
L H 0.8 
Q H 0.8 
A H 0.8 
Q H 0.8 
M H 0.8 
Y H 0.8 
R H 0.6 
L E 0.6 
T E 0.6 
L E 0.6 
R C 0.6 
T C 0.8 
S C 1.0 
K C 1.0 
D C 0.8 
T C 0.8 
V H 0.6 
S H 0.6 
Q H 0.8 
R H 0.8 
L H 0.8 
C H 1.0 
E H 1.0 
L H 1.0 
L H 1.0 
S H 0.8 
E H 0.8 
Q H 0.8 
F C 0.6 
END 
