REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0071AL212_2 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : BRYANT 
REMARK  ---------------------------------------------------------- 
TARGET T0071  
REMARK =======================================================================  
AUTHOR 2738-1421-4442  
REMARK Prepared by Anna Panchenko, Aron Marchler-Bauer, and Steve Bryant, NCBI.   
REMARK =======================================================================  
METHOD Predictions were made with the potential and alignment model used in   
METHOD CASP1 and CASP2 predictions, as described by Madej et al. in Proteins   
METHOD 23:356-369, 1995. Convergence control has been added to the Gibbs-  
METHOD Sampling alignment model. In addition to contact-based threading   
METHOD potentials, PSSMs summarizing sequence conservation in the family   
METHOD represented by the template structure are used to score threading  
METHOD alignments. Threading "cores" summarizing the conserved substructure   
METHOD in the templates used for models below have been based on structure  
METHOD superpositions generated by VAST (Gibrat et al., Curr Opin Struct  
METHOD Biol 1996 Jun;6(3):377-385 ).  
METHOD The alignments have been calculated with the Gibbs Sampling threading  
METHOD engine. Models 1-2 have been calculated with PSSMs and a weight of  
METHOD 0.5. Models 3 and 4 have been calculated using contact-based scoring   
METHOD parameters. The models represent top scoring hits in database  
METHOD searches with different parameters. Model 5 indicates that no template  
METHOD was identified for domain 2 of T0071.  
REMARK =======================================================================  
MODEL  2  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 3dpa 
ATOM      1  CA  ALA     6      30.631  22.736  12.709  1.00  0.00              
ATOM      2  CA  ARG     7      30.593  23.611  16.365  1.00  0.00              
ATOM      3  CA  PHE     8      31.517  27.233  16.779  1.00  0.00              
ATOM      4  CA  VAL     9      32.213  29.260  20.023  1.00  0.00              
ATOM      5  CA  CYS    10      30.654  32.472  21.233  1.00  0.00              
ATOM      6  CA  LYS    11      34.013  34.309  21.338  1.00  0.00              
ATOM      7  CA  GLY    14      39.689  35.015  23.054  1.00  0.00              
ATOM      8  CA  VAL    15      38.636  34.586  26.690  1.00  0.00              
ATOM      9  CA  LEU    16      39.560  36.164  29.988  1.00  0.00              
ATOM     10  CA  PHE    17      39.086  34.030  33.105  1.00  0.00              
ATOM     11  CA  GLU    18      38.455  36.367  36.029  1.00  0.00              
ATOM     12  CA  ASN    19      40.336  34.931  38.997  1.00  0.00              
ATOM     13  CA  LEU    21      34.153  29.116  37.173  1.00  0.00              
ATOM     14  CA  LEU    22      32.747  30.673  34.094  1.00  0.00              
ATOM     15  CA  GLN    23      31.125  29.198  30.917  1.00  0.00              
ATOM     16  CA  ILE    24      31.588  29.273  27.147  1.00  0.00              
ATOM     17  CA  GLY    25      28.612  28.863  24.803  1.00  0.00              
ATOM     18  CA  LEU    26      29.127  26.565  21.775  1.00  0.00              
ATOM     19  CA  LYS    27      26.793  25.610  18.847  1.00  0.00              
ATOM     20  CA  SER    28      26.424  22.929  16.203  1.00  0.00              
ATOM     21  CA  GLU    29      25.676  25.283  13.281  1.00  0.00              
ATOM     22  CA  PHE    30      25.285  22.317  10.967  1.00  0.00              
ATOM     23  CA  GLN    32      25.196  15.695  14.859  1.00  0.00              
ATOM     24  CA  ASN    33      28.779  16.313  16.181  1.00  0.00              
ATOM     25  CA  LEU    34      30.783  15.286  19.196  1.00  0.00              
ATOM     26  CA  GLY    35      32.537  18.373  20.684  1.00  0.00              
ATOM     27  CA  ARG    36      35.721  17.839  22.746  1.00  0.00              
ATOM     28  CA  MET    37      37.069  20.408  25.183  1.00  0.00              
ATOM     29  CA  PHE    38      40.439  20.561  26.807  1.00  0.00              
ATOM     30  CA  ILE    39      42.920  23.042  28.161  1.00  0.00              
ATOM     31  CA  PHE    40      46.628  23.516  27.364  1.00  0.00              
ATOM     32  CA  TYR    41      49.261  25.510  29.031  1.00  0.00              
ATOM     33  CA  GLY    42      50.486  24.283  24.186  1.00  0.00              
ATOM     34  CA  ASN    43      50.816  21.023  26.085  1.00  0.00              
ATOM     35  CA  LYS    44      47.498  19.563  27.435  1.00  0.00              
ATOM     36  CA  THR    45      47.001  19.802  31.073  1.00  0.00              
ATOM     37  CA  SER    46      44.464  17.146  32.336  1.00  0.00              
ATOM     38  CA  THR    47      44.429  17.810  36.047  1.00  0.00              
ATOM     39  CA  GLN    48      44.214  21.616  36.190  1.00  0.00              
ATOM     40  CA  PHE    49      44.840  24.430  37.440  1.00  0.00              
ATOM     41  CA  LEU    50      41.911  25.257  35.005  1.00  0.00              
ATOM     42  CA  ASN    51      39.656  22.406  33.822  1.00  0.00              
ATOM     43  CA  PHE    52      36.919  22.360  31.084  1.00  0.00              
ATOM     44  CA  THR    53      33.806  20.296  31.746  1.00  0.00              
ATOM     45  CA  THR    55      35.348  16.757  28.097  1.00  0.00              
ATOM     46  CA  LEU    56      32.934  15.433  25.422  1.00  0.00              
ATOM     47  CA  ILE    57      29.319  15.940  24.471  1.00  0.00              
ATOM     48  CA  CYS    58      27.093  15.291  21.389  1.00  0.00              
ATOM     49  CA  ALA    59      25.554  18.440  19.865  1.00  0.00              
ATOM     50  CA  ASP    60      22.448  17.448  17.779  1.00  0.00              
ATOM     51  CA  LEU    62      21.820  22.622  19.335  1.00  0.00              
ATOM     52  CA  GLN    63      23.493  25.193  21.551  1.00  0.00              
ATOM     53  CA  THR    64      25.332  24.206  24.779  1.00  0.00              
ATOM     54  CA  ASN    65      28.022  25.206  27.267  1.00  0.00              
ATOM     55  CA  LEU    66      31.480  24.183  28.531  1.00  0.00              
ATOM     56  CA  ASN    67      32.263  25.116  32.133  1.00  0.00              
ATOM     57  CA  LEU    68      35.879  26.299  32.944  1.00  0.00              
ATOM     58  CA  GLN    69      36.613  25.810  36.656  1.00  0.00              
ATOM     59  CA  THR    70      39.894  26.175  38.581  1.00  0.00              
ATOM     60  CA  LYS    71      41.601  23.599  40.904  1.00  0.00              
ATOM     61  CA  PRO    72      43.157  24.583  44.438  1.00  0.00              
ATOM     62  CA  VAL    73      46.586  25.111  42.767  1.00  0.00              
ATOM     63  CA  VAL    77      50.032  30.949  39.751  1.00  0.00              
ATOM     64  CA  ASP    78      51.516  34.484  39.989  1.00  0.00              
ATOM     65  CA  GLY    79      49.054  37.028  41.319  1.00  0.00              
ATOM     66  CA  GLY    80      50.766  40.025  39.842  1.00  0.00              
ATOM     67  CA  ALA    81      50.455  38.963  36.259  1.00  0.00              
ATOM     68  CA  GLN    82      48.240  37.172  33.854  1.00  0.00              
ATOM     69  CA  VAL    83      48.862  33.533  32.881  1.00  0.00              
ATOM     70  CA  GLN    84      48.103  32.190  29.353  1.00  0.00              
ATOM     71  CA  GLN    85      46.293  28.951  28.600  1.00  0.00              
ATOM     72  CA  VAL    86      44.528  27.698  25.438  1.00  0.00              
ATOM     73  CA  ILE    87      40.994  26.411  25.255  1.00  0.00              
ATOM     74  CA  ASN    88      40.557  23.797  22.561  1.00  0.00              
ATOM     75  CA  ILE    89      37.443  22.425  21.061  1.00  0.00              
ATOM     76  CA  GLU    90      37.437  19.639  18.381  1.00  0.00              
ATOM     77  CA  CYS    91      34.477  18.344  16.247  1.00  0.00              
ATOM     78  CA  ILE    92      34.245  14.637  15.806  1.00  0.00              
ATOM     79  CA  GLY   108      31.986  15.431   4.641  1.00  0.00              
ATOM     80  CA  GLY   109      35.526  15.977   5.805  1.00  0.00              
ATOM     81  CA  THR   110      37.392  16.666   9.048  1.00  0.00              
ATOM     82  CA  PHE   111      37.798  16.991  12.735  1.00  0.00              
ATOM     83  CA  GLN   112      37.965  20.754  12.868  1.00  0.00              
ATOM     84  CA  ASN   113      39.694  22.294  15.815  1.00  0.00              
ATOM     85  CA  VAL   114      39.127  25.806  17.300  1.00  0.00              
ATOM     86  CA  SER   115      41.903  27.006  19.596  1.00  0.00              
ATOM     87  CA  VAL   116      41.401  30.327  21.524  1.00  0.00              
ATOM     88  CA  LYS   117      43.545  32.266  24.012  1.00  0.00              
ATOM     89  CA  LEU   118      42.391  32.136  27.678  1.00  0.00              
ATOM     90  CA  PRO   119      43.954  34.838  29.854  1.00  0.00              
ATOM     91  CA  ILE   120      43.793  33.898  33.419  1.00  0.00              
ATOM     92  CA  THR   121      43.530  37.268  35.121  1.00  0.00              
END
