PFRMAT SS 
TARGET T0070 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t70.t98_2.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 5.87584 
METHOD 
MODEL 1 
Q C 0.91 
S C 0.93 
S C 0.67 
V E 0.68 
T E 0.87 
L E 0.92 
F E 0.94 
G E 0.92 
I E 0.87 
V E 0.75 
D E 0.50 
T C 0.55 
N C 0.71 
V C 0.58 
A C 0.46 
Y C 0.55 
V C 0.77 
N C 0.69 
K C 0.65 
D C 0.71 
A C 0.72 
A C 0.84 
G C 0.86 
D C 0.90 
S C 0.78 
R C 0.52 
Y E 0.46 
G E 0.51 
L E 0.52 
G C 0.50 
T C 0.71 
S C 0.83 
G C 0.78 
A C 0.68 
S C 0.70 
T C 0.85 
S C 0.78 
R C 0.51 
L C 0.47 
G C 0.57 
L C 0.54 
R C 0.71 
G C 0.82 
T H 0.65 
E H 0.88 
D H 0.87 
L H 0.72 
G C 0.57 
G C 0.80 
G C 0.88 
L E 0.48 
K E 0.88 
A E 0.96 
G E 0.97 
F E 0.94 
W E 0.89 
L E 0.78 
E E 0.51 
G C 0.72 
E C 0.79 
I C 0.72 
F C 0.64 
G C 0.69 
D C 0.84 
D C 0.86 
G C 0.87 
N C 0.91 
A C 0.88 
S C 0.80 
G C 0.76 
F C 0.68 
N C 0.54 
F C 0.63 
K C 0.73 
R C 0.65 
R C 0.65 
S E 0.47 
T E 0.72 
V E 0.75 
S E 0.66 
L E 0.54 
S C 0.65 
G C 0.87 
N C 0.90 
F C 0.80 
G C 0.59 
E E 0.83 
V E 0.92 
R E 0.91 
L E 0.78 
G C 0.60 
R C 0.65 
D C 0.62 
L C 0.66 
V C 0.73 
P C 0.58 
T C 0.45 
S H 0.46 
Q C 0.41 
K C 0.43 
L C 0.63 
T C 0.79 
S C 0.65 
Y C 0.57 
D C 0.58 
L C 0.48 
F C 0.50 
S C 0.45 
A C 0.52 
T C 0.74 
G C 0.86 
I C 0.82 
G C 0.74 
P C 0.61 
F C 0.52 
M C 0.63 
G C 0.74 
F C 0.63 
R C 0.62 
N C 0.67 
W C 0.62 
A C 0.63 
A C 0.78 
G C 0.89 
Q C 0.71 
G C 0.66 
A C 0.73 
D C 0.70 
D C 0.80 
N C 0.85 
G C 0.70 
I C 0.65 
R C 0.62 
A C 0.68 
N C 0.90 
N C 0.81 
L E 0.60 
I E 0.81 
S E 0.85 
Y E 0.80 
Y C 0.50 
T C 0.87 
P C 0.85 
N C 0.49 
F C 0.56 
G C 0.74 
G C 0.70 
F C 0.45 
N E 0.40 
A C 0.42 
G C 0.63 
F C 0.48 
G E 0.55 
Y E 0.58 
A E 0.52 
F C 0.54 
D C 0.77 
E C 0.78 
K C 0.84 
Q C 0.88 
T C 0.81 
I C 0.78 
G C 0.82 
T C 0.62 
A C 0.62 
D C 0.82 
S C 0.75 
V C 0.65 
G C 0.63 
R C 0.50 
Y C 0.46 
I C 0.43 
G C 0.50 
G C 0.49 
Y C 0.45 
V E 0.48 
A E 0.45 
Y C 0.50 
D C 0.74 
N C 0.83 
G C 0.90 
P C 0.80 
L C 0.46 
S E 0.40 
A E 0.45 
S H 0.39 
L C 0.39 
G C 0.46 
L H 0.48 
A C 0.51 
Q H 0.51 
Q C 0.51 
K C 0.65 
T C 0.66 
A C 0.74 
V C 0.80 
G C 0.87 
G C 0.83 
L C 0.67 
A C 0.69 
T C 0.77 
D C 0.71 
R C 0.55 
D H 0.47 
E H 0.49 
I H 0.47 
T H 0.40 
L C 0.42 
G C 0.70 
A C 0.54 
S C 0.48 
Y C 0.48 
N C 0.43 
F H 0.48 
G H 0.49 
V H 0.72 
A H 0.84 
K H 0.85 
L H 0.90 
S H 0.90 
G H 0.87 
L H 0.82 
L H 0.71 
Q H 0.61 
Q H 0.51 
T C 0.53 
K C 0.59 
F C 0.63 
K C 0.74 
R C 0.84 
D C 0.88 
I C 0.84 
G C 0.86 
G C 0.83 
D C 0.76 
I C 0.60 
K C 0.52 
T C 0.60 
N C 0.72 
S C 0.54 
Y E 0.59 
M E 0.73 
L E 0.64 
G C 0.61 
A E 0.53 
S E 0.61 
A E 0.51 
P C 0.51 
V C 0.60 
G C 0.81 
G C 0.71 
V C 0.60 
G C 0.53 
E C 0.48 
V E 0.38 
K E 0.47 
L E 0.45 
Q E 0.46 
Y E 0.40 
A C 0.34 
L C 0.42 
Y C 0.59 
D C 0.72 
Q C 0.76 
K C 0.72 
A C 0.71 
I C 0.73 
D C 0.82 
S C 0.82 
K C 0.58 
A C 0.51 
H C 0.43 
Q E 0.49 
I E 0.60 
T E 0.63 
L E 0.46 
G C 0.72 
Y C 0.59 
V C 0.54 
H C 0.60 
N C 0.62 
L C 0.58 
S C 0.72 
K C 0.48 
R H 0.48 
T H 0.57 
A H 0.65 
L H 0.74 
Y H 0.70 
G H 0.70 
N H 0.64 
L H 0.65 
A H 0.65 
F H 0.64 
L H 0.58 
K C 0.50 
N C 0.76 
K C 0.85 
D C 0.77 
A C 0.75 
S C 0.82 
T C 0.76 
L C 0.78 
G C 0.81 
L C 0.61 
Q E 0.52 
A E 0.57 
K E 0.56 
G E 0.57 
V E 0.55 
Y C 0.50 
A C 0.70 
G C 0.86 
G C 0.89 
V C 0.73 
Q C 0.69 
A C 0.75 
G C 0.81 
E C 0.77 
S C 0.79 
Q C 0.76 
T C 0.64 
G E 0.45 
V E 0.64 
Q E 0.75 
V E 0.70 
G E 0.54 
I E 0.56 
R E 0.52 
H C 0.44 
A C 0.58 
F C 0.68 
END 
