PFRMAT TS 
TARGET T0065 
AUTHOR 9098-1319-9502 
REMARK Enoch S. Huang and Jay W. Ponder 
METHOD 
METHOD Model of sin-i fragment (two helices of multimerization domain). 
METHOD The fragment was modeled from 1cos_C (first helix) and 1cos_B 
METHOD (second helix) after manual alignment. Side-chains were placed with 
METHOD the software SCWRL (Bower MJ, Cohen FE, Dunbrack RL, Jr. 
METHOD J Mol Biol 1997; 267:1268-82). 
METHOD 
MODEL 1 
PARENT 1cos_B 1cos_C 
ATOM      1  N   HIS B   8      10.612 -14.510   3.401  1.00  0.00 
ATOM      2  CA  HIS B   8       9.534 -14.153   4.280  1.00  0.00 
ATOM      3  C   HIS B   8       8.309 -14.910   3.867  1.00  0.00 
ATOM      4  O   HIS B   8       7.688 -15.506   4.752  1.00  0.00 
ATOM      5  CB  HIS B   8       9.252 -12.651   4.201  1.00  0.00 
ATOM      6  CG  HIS B   8       8.163 -12.191   5.119  1.00  0.00 
ATOM      7  ND1 HIS B   8       8.377 -11.929   6.454  1.00  0.00 
ATOM      8  CD2 HIS B   8       6.743 -11.901   4.983  1.00  0.00 
ATOM      9  CE1 HIS B   8       7.219 -11.537   7.014  1.00  0.00 
ATOM     10  NE2 HIS B   8       6.234 -11.517   6.137  1.00  0.00 
ATOM     11  N   PHE B   9       7.957 -14.901   2.526  1.00  0.00 
ATOM     12  CA  PHE B   9       6.743 -15.565   2.023  1.00  0.00 
ATOM     13  C   PHE B   9       6.770 -17.072   2.162  1.00  0.00 
ATOM     14  O   PHE B   9       5.752 -17.732   2.412  1.00  0.00 
ATOM     15  CB  PHE B   9       6.545 -15.264   0.536  1.00  0.00 
ATOM     16  CG  PHE B   9       5.310 -15.888  -0.049  1.00  0.00 
ATOM     17  CD1 PHE B   9       4.061 -15.340   0.187  1.00  0.00 
ATOM     18  CD2 PHE B   9       5.397 -17.023  -0.836  1.00  0.00 
ATOM     19  CE1 PHE B   9       2.925 -15.914  -0.351  1.00  0.00 
ATOM     20  CE2 PHE B   9       4.261 -17.597  -1.375  1.00  0.00 
ATOM     21  CZ  PHE B   9       3.029 -17.047  -1.135  1.00  0.00 
ATOM     22  N   GLU B  10       7.921 -17.671   1.984  1.00  0.00 
ATOM     23  CA  GLU B  10       8.020 -19.112   2.217  1.00  0.00 
ATOM     24  C   GLU B  10       7.918 -19.526   3.708  1.00  0.00 
ATOM     25  O   GLU B  10       7.286 -20.530   4.021  1.00  0.00 
ATOM     26  CB  GLU B  10       9.362 -19.646   1.711  1.00  0.00 
ATOM     27  CG  GLU B  10       9.502 -19.637   0.197  1.00  0.00 
ATOM     28  CD  GLU B  10      10.866 -20.111  -0.264  1.00  0.00 
ATOM     29  OE1 GLU B  10      11.711 -20.421   0.602  1.00  0.00 
ATOM     30  OE2 GLU B  10      11.090 -20.172  -1.491  1.00  0.00 
ATOM     31  N   LEU B  11       8.468 -18.701   4.643  1.00  0.00 
ATOM     32  CA  LEU B  11       8.313 -18.943   6.079  1.00  0.00 
ATOM     33  C   LEU B  11       6.876 -18.758   6.493  1.00  0.00 
ATOM     34  O   LEU B  11       6.286 -19.517   7.280  1.00  0.00 
ATOM     35  CB  LEU B  11       9.177 -17.969   6.883  1.00  0.00 
ATOM     36  CG  LEU B  11      10.682 -18.244   6.888  1.00  0.00 
ATOM     37  CD1 LEU B  11      11.427 -17.146   7.632  1.00  0.00 
ATOM     38  CD2 LEU B  11      10.984 -19.570   7.571  1.00  0.00 
ATOM     39  N   ASP B  12       6.350 -17.647   6.051  1.00  0.00 
ATOM     40  CA  ASP B  12       4.965 -17.385   6.315  1.00  0.00 
ATOM     41  C   ASP B  12       4.045 -18.541   5.919  1.00  0.00 
ATOM     42  O   ASP B  12       3.063 -18.791   6.617  1.00  0.00 
ATOM     43  CB  ASP B  12       4.495 -16.154   5.538  1.00  0.00 
ATOM     44  CG  ASP B  12       5.071 -14.864   6.086  1.00  0.00 
ATOM     45  OD1 ASP B  12       4.472 -13.795   5.843  1.00  0.00 
ATOM     46  OD2 ASP B  12       6.122 -14.921   6.757  1.00  0.00 
ATOM     47  N   GLN B  13       4.433 -19.321   4.906  1.00  0.00 
ATOM     48  CA  GLN B  13       3.590 -20.413   4.463  1.00  0.00 
ATOM     49  C   GLN B  13       3.669 -21.534   5.420  1.00  0.00 
ATOM     50  O   GLN B  13       2.765 -22.352   5.571  1.00  0.00 
ATOM     51  CB  GLN B  13       4.038 -20.913   3.088  1.00  0.00 
ATOM     52  CG  GLN B  13       3.799 -19.921   1.960  1.00  0.00 
ATOM     53  CD  GLN B  13       4.312 -20.423   0.625  1.00  0.00 
ATOM     54  OE1 GLN B  13       4.870 -21.517   0.535  1.00  0.00 
ATOM     55  NE2 GLN B  13       4.123 -19.624  -0.419  1.00  0.00 
ATOM     56  N   GLU B  14       4.873 -21.643   5.924  1.00  0.00 
ATOM     57  CA  GLU B  14       5.193 -22.691   6.831  1.00  0.00 
ATOM     58  C   GLU B  14       4.591 -22.526   8.201  1.00  0.00 
ATOM     59  O   GLU B  14       4.055 -23.510   8.709  1.00  0.00 
ATOM     60  CB  GLU B  14       6.707 -22.784   7.029  1.00  0.00 
ATOM     61  CG  GLU B  14       7.464 -23.283   5.810  1.00  0.00 
ATOM     62  CD  GLU B  14       8.965 -23.299   6.021  1.00  0.00 
ATOM     63  OE1 GLU B  14       9.415 -22.895   7.114  1.00  0.00 
ATOM     64  OE2 GLU B  14       9.691 -23.717   5.096  1.00  0.00 
ATOM     65  N   TRP B  15       4.575 -21.270   8.705  1.00  0.00 
ATOM     66  CA  TRP B  15       3.895 -20.898   9.964  1.00  0.00 
ATOM     67  C   TRP B  15       2.373 -21.090   9.864  1.00  0.00 
ATOM     68  O   TRP B  15       1.709 -21.021  10.872  1.00  0.00 
ATOM     69  CB  TRP B  15       4.161 -19.429  10.303  1.00  0.00 
ATOM     70  CG  TRP B  15       5.591 -19.142  10.642  1.00  0.00 
ATOM     71  CD1 TRP B  15       6.545 -18.634   9.809  1.00  0.00 
ATOM     72  CD2 TRP B  15       6.231 -19.347  11.908  1.00  0.00 
ATOM     73  NE1 TRP B  15       7.740 -18.508  10.476  1.00  0.00 
ATOM     74  CE2 TRP B  15       7.573 -18.940  11.768  1.00  0.00 
ATOM     75  CE3 TRP B  15       5.801 -19.834  13.146  1.00  0.00 
ATOM     76  CZ2 TRP B  15       8.486 -19.005  12.818  1.00  0.00 
ATOM     77  CZ3 TRP B  15       6.710 -19.897  14.185  1.00  0.00 
ATOM     78  CH2 TRP B  15       8.037 -19.486  14.018  1.00  0.00 
ATOM     79  N   VAL B  16       1.839 -21.041   8.629  1.00  0.00 
ATOM     80  CA  VAL B  16       0.447 -21.204   8.235  1.00  0.00 
ATOM     81  C   VAL B  16       0.103 -22.691   8.336  1.00  0.00 
ATOM     82  O   VAL B  16      -0.897 -23.069   8.932  1.00  0.00 
ATOM     83  CB  VAL B  16       0.209 -20.722   6.793  1.00  0.00 
ATOM     84  CG1 VAL B  16      -1.204 -21.064   6.344  1.00  0.00 
ATOM     85  CG2 VAL B  16       0.393 -19.215   6.697  1.00  0.00 
ATOM     86  N   GLU B  17       0.991 -23.514   7.774  1.00  0.00 
ATOM     87  CA  GLU B  17       0.964 -24.982   7.788  1.00  0.00 
ATOM     88  C   GLU B  17       0.786 -25.543   9.189  1.00  0.00 
ATOM     89  O   GLU B  17      -0.267 -26.064   9.486  1.00  0.00 
ATOM     90  CB  GLU B  17       2.271 -25.547   7.230  1.00  0.00 
ATOM     91  CG  GLU B  17       2.236 -27.043   6.959  1.00  0.00 
ATOM     92  CD  GLU B  17       3.543 -27.564   6.396  1.00  0.00 
ATOM     93  OE1 GLU B  17       4.476 -26.754   6.212  1.00  0.00 
ATOM     94  OE2 GLU B  17       3.635 -28.783   6.139  1.00  0.00 
ATOM     95  N   LEU B  18       1.818 -25.391  10.036  1.00  0.00 
ATOM     96  CA  LEU B  18       1.832 -25.725  11.460  1.00  0.00 
ATOM     97  C   LEU B  18       0.610 -25.213  12.226  1.00  0.00 
ATOM     98  O   LEU B  18       0.021 -25.951  13.027  1.00  0.00 
ATOM     99  CB  LEU B  18       3.062 -25.121  12.140  1.00  0.00 
ATOM    100  CG  LEU B  18       3.304 -25.532  13.594  1.00  0.00 
ATOM    101  CD1 LEU B  18       3.567 -27.027  13.693  1.00  0.00 
ATOM    102  CD2 LEU B  18       4.507 -24.799  14.167  1.00  0.00 
ATOM    103  N   MET B  19       0.235 -23.950  11.972  1.00  0.00 
ATOM    104  CA  MET B  19      -0.952 -23.345  12.575  1.00  0.00 
ATOM    105  C   MET B  19      -2.244 -24.009  12.118  1.00  0.00 
ATOM    106  O   MET B  19      -3.205 -24.169  12.862  1.00  0.00 
ATOM    107  CB  MET B  19      -1.045 -21.863  12.204  1.00  0.00 
ATOM    108  CG  MET B  19      -2.155 -21.112  12.922  1.00  0.00 
ATOM    109  SD  MET B  19      -2.210 -19.364  12.484  1.00  0.00 
ATOM    110  CE  MET B  19      -2.854 -19.453  10.815  1.00  0.00 
ATOM    111  N   VAL B  20      -2.206 -24.519  10.910  1.00  0.00 
ATOM    112  CA  VAL B  20      -3.331 -25.248  10.431  1.00  0.00 
ATOM    113  C   VAL B  20      -3.462 -26.535  11.252  1.00  0.00 
ATOM    114  O   VAL B  20      -4.556 -26.854  11.739  1.00  0.00 
ATOM    115  CB  VAL B  20      -3.173 -25.617   8.945  1.00  0.00 
ATOM    116  CG1 VAL B  20      -4.293 -26.548   8.506  1.00  0.00 
ATOM    117  CG2 VAL B  20      -3.219 -24.367   8.079  1.00  0.00 
ATOM    118  N   GLU B  21      -2.320 -27.204  11.517  1.00  0.00 
ATOM    119  CA  GLU B  21      -2.241 -28.413  12.369  1.00  0.00 
ATOM    120  C   GLU B  21      -2.623 -28.243  13.846  1.00  0.00 
ATOM    121  O   GLU B  21      -3.323 -29.071  14.379  1.00  0.00 
ATOM    122  CB  GLU B  21      -0.814 -28.964  12.387  1.00  0.00 
ATOM    123  CG  GLU B  21      -0.667 -30.283  13.127  1.00  0.00 
ATOM    124  CD  GLU B  21       0.757 -30.803  13.113  1.00  0.00 
ATOM    125  OE1 GLU B  21       1.629 -30.134  12.520  1.00  0.00 
ATOM    126  OE2 GLU B  21       1.002 -31.880  13.696  1.00  0.00 
ATOM    127  N   ALA B  22      -2.146 -27.215  14.543  1.00  0.00 
ATOM    128  CA  ALA B  22      -2.461 -27.121  15.956  1.00  0.00 
ATOM    129  C   ALA B  22      -3.944 -27.042  16.205  1.00  0.00 
ATOM    130  O   ALA B  22      -4.534 -27.936  16.815  1.00  0.00 
ATOM    131  CB  ALA B  22      -1.827 -25.877  16.559  1.00  0.00 
ATOM    132  N   LYS B  23      -4.528 -25.926  15.769  1.00  0.00 
ATOM    133  CA  LYS B  23      -5.942 -25.673  15.950  1.00  0.00 
ATOM    134  C   LYS B  23      -6.848 -26.814  15.406  1.00  0.00 
ATOM    135  O   LYS B  23      -8.047 -26.845  15.651  1.00  0.00 
ATOM    136  CB  LYS B  23      -6.355 -24.391  15.222  1.00  0.00 
ATOM    137  CG  LYS B  23      -5.741 -23.125  15.797  1.00  0.00 
ATOM    138  CD  LYS B  23      -6.192 -21.894  15.028  1.00  0.00 
ATOM    139  CE  LYS B  23      -5.568 -20.629  15.596  1.00  0.00 
ATOM    140  NZ  LYS B  23      -5.973 -19.418  14.830  1.00  0.00 
ATOM    141  N   GLU B  24      -6.258 -27.810  14.709  1.00  0.00 
ATOM    142  CA  GLU B  24      -6.971 -29.034  14.335  1.00  0.00 
ATOM    143  C   GLU B  24      -6.893 -30.099  15.470  1.00  0.00 
ATOM    144  O   GLU B  24      -7.822 -30.863  15.751  1.00  0.00 
ATOM    145  CB  GLU B  24      -6.363 -29.643  13.070  1.00  0.00 
ATOM    146  CG  GLU B  24      -7.157 -30.805  12.497  1.00  0.00 
ATOM    147  CD  GLU B  24      -6.532 -31.374  11.239  1.00  0.00 
ATOM    148  OE1 GLU B  24      -5.480 -30.855  10.811  1.00  0.00 
ATOM    149  OE2 GLU B  24      -7.094 -32.340  10.681  1.00  0.00 
ATOM    177  N   PRO B  29       3.739 -34.289  19.598  1.00  0.00 
ATOM    178  CA  PRO B  29       4.137 -32.965  20.146  1.00  0.00 
ATOM    179  C   PRO B  29       5.582 -32.618  19.759  1.00  0.00 
ATOM    180  O   PRO B  29       5.967 -31.513  19.326  1.00  0.00 
ATOM    181  CB  PRO B  29       3.988 -33.131  21.659  1.00  0.00 
ATOM    182  CG  PRO B  29       2.957 -34.198  21.818  1.00  0.00 
ATOM    183  CD  PRO B  29       3.251 -35.223  20.758  1.00  0.00 
ATOM    184  N   GLU B  30       6.402 -33.648  19.876  1.00  0.00 
ATOM    185  CA  GLU B  30       7.815 -33.556  19.530  1.00  0.00 
ATOM    186  C   GLU B  30       8.081 -33.192  18.097  1.00  0.00 
ATOM    187  O   GLU B  30       8.902 -32.330  17.827  1.00  0.00 
ATOM    188  CB  GLU B  30       8.514 -34.895  19.770  1.00  0.00 
ATOM    189  CG  GLU B  30      10.020 -34.855  19.566  1.00  0.00 
ATOM    190  CD  GLU B  30      10.679 -36.196  19.825  1.00  0.00 
ATOM    191  OE1 GLU B  30       9.958 -37.155  20.171  1.00  0.00 
ATOM    192  OE2 GLU B  30      11.916 -36.287  19.683  1.00  0.00 
ATOM    193  N   GLU B  31       7.366 -33.864  17.189  1.00  0.00 
ATOM    194  CA  GLU B  31       7.383 -33.496  15.760  1.00  0.00 
ATOM    195  C   GLU B  31       7.032 -32.023  15.572  1.00  0.00 
ATOM    196  O   GLU B  31       7.742 -31.316  14.902  1.00  0.00 
ATOM    197  CB  GLU B  31       6.368 -34.333  14.979  1.00  0.00 
ATOM    198  CG  GLU B  31       6.428 -34.136  13.473  1.00  0.00 
ATOM    199  CD  GLU B  31       5.417 -34.989  12.733  1.00  0.00 
ATOM    200  OE1 GLU B  31       4.672 -35.739  13.398  1.00  0.00 
ATOM    201  OE2 GLU B  31       5.369 -34.907  11.487  1.00  0.00 
ATOM    202  N   ILE B  32       5.933 -31.535  16.153  1.00  0.00 
ATOM    203  CA  ILE B  32       5.575 -30.129  16.015  1.00  0.00 
ATOM    204  C   ILE B  32       6.659 -29.276  16.627  1.00  0.00 
ATOM    205  O   ILE B  32       6.835 -28.129  16.246  1.00  0.00 
ATOM    206  CB  ILE B  32       4.245 -29.813  16.724  1.00  0.00 
ATOM    207  CG1 ILE B  32       3.082 -30.504  16.008  1.00  0.00 
ATOM    208  CG2 ILE B  32       3.986 -28.314  16.728  1.00  0.00 
ATOM    209  CD1 ILE B  32       1.775 -30.441  16.767  1.00  0.00 
ATOM    210  N   ARG B  33       7.272 -29.802  17.687  1.00  0.00 
ATOM    211  CA  ARG B  33       8.292 -29.077  18.441  1.00  0.00 
ATOM    212  C   ARG B  33       9.586 -28.842  17.641  1.00  0.00 
ATOM    213  O   ARG B  33      10.108 -27.697  17.524  1.00  0.00 
ATOM    214  CB  ARG B  33       8.680 -29.853  19.700  1.00  0.00 
ATOM    215  CG  ARG B  33       9.656 -29.120  20.605  1.00  0.00 
ATOM    216  CD  ARG B  33       9.967 -29.929  21.854  1.00  0.00 
ATOM    217  NE  ARG B  33      10.931 -29.253  22.719  1.00  0.00 
ATOM    218  CZ  ARG B  33      11.415 -29.770  23.844  1.00  0.00 
ATOM    219  NH1 ARG B  33      12.288 -29.082  24.566  1.00  0.00 
ATOM    220  NH2 ARG B  33      11.024 -30.972  24.244  1.00  0.00 
ATOM    221  N   LYS B  34      10.045 -29.933  17.011  1.00  0.00 
ATOM    222  CA  LYS B  34      11.187 -29.862  16.107  1.00  0.00 
ATOM    223  C   LYS B  34      10.949 -28.827  14.987  1.00  0.00 
ATOM    224  O   LYS B  34      11.732 -27.896  14.808  1.00  0.00 
ATOM    225  CB  LYS B  34      11.436 -31.223  15.451  1.00  0.00 
ATOM    226  CG  LYS B  34      12.675 -31.269  14.571  1.00  0.00 
ATOM    227  CD  LYS B  34      12.877 -32.653  13.975  1.00  0.00 
ATOM    228  CE  LYS B  34      14.104 -32.694  13.079  1.00  0.00 
ATOM    229  NZ  LYS B  34      14.321 -34.047  12.497  1.00  0.00 
ATOM    230  N   TYR B  35       9.783 -28.947  14.316  1.00  0.00 
ATOM    231  CA  TYR B  35       9.325 -28.134  13.200  1.00  0.00 
ATOM    232  C   TYR B  35       9.364 -26.663  13.555  1.00  0.00 
ATOM    233  O   TYR B  35       9.995 -25.872  12.865  1.00  0.00 
ATOM    234  CB  TYR B  35       7.887 -28.499  12.826  1.00  0.00 
ATOM    235  CG  TYR B  35       7.323 -27.677  11.689  1.00  0.00 
ATOM    236  CD1 TYR B  35       7.675 -27.948  10.373  1.00  0.00 
ATOM    237  CD2 TYR B  35       6.440 -26.634  11.936  1.00  0.00 
ATOM    238  CE1 TYR B  35       7.164 -27.202   9.327  1.00  0.00 
ATOM    239  CE2 TYR B  35       5.919 -25.878  10.903  1.00  0.00 
ATOM    240  CZ  TYR B  35       6.289 -26.171   9.591  1.00  0.00 
ATOM    241  OH  TYR B  35       5.779 -25.427   8.552  1.00  0.00 
ATOM    242  N   LEU B  36       8.734 -26.299  14.678  1.00  0.00 
ATOM    243  CA  LEU B  36       8.794 -24.933  15.235  1.00  0.00 
ATOM    244  C   LEU B  36      10.212 -24.440  15.491  1.00  0.00 
ATOM    245  O   LEU B  36      10.525 -23.293  15.272  1.00  0.00 
ATOM    246  CB  LEU B  36       8.055 -24.867  16.573  1.00  0.00 
ATOM    247  CG  LEU B  36       7.932 -23.482  17.212  1.00  0.00 
ATOM    248  CD1 LEU B  36       7.112 -22.554  16.330  1.00  0.00 
ATOM    249  CD2 LEU B  36       7.251 -23.575  18.569  1.00  0.00 
ATOM    250  N   LEU B  37      11.032 -25.260  16.095  1.00  0.00 
ATOM    251  CA  LEU B  37      12.416 -24.882  16.295  1.00  0.00 
ATOM    252  C   LEU B  37      13.170 -24.632  14.959  1.00  0.00 
ATOM    253  O   LEU B  37      13.991 -23.704  14.862  1.00  0.00 
ATOM    254  CB  LEU B  37      13.170 -25.984  17.042  1.00  0.00 
ATOM    255  CG  LEU B  37      12.762 -26.218  18.497  1.00  0.00 
ATOM    256  CD1 LEU B  37      13.512 -27.404  19.082  1.00  0.00 
ATOM    257  CD2 LEU B  37      13.071 -24.994  19.345  1.00  0.00 
TER 
END 
