 
PFRMAT TS 
TARGET T0064 
AUTHOR 9808-8259-1323 
METHOD Searched 1962 pdb sequences with max. 90% identity using target 
METHOD sequence and PAM250. N-terminal half modeled on 1r69. C-terminal 
METHOD half ab initio folding using two atoms (CA,CB) per residue and a  
METHOD statistical 
METHOD scoring function derived from known 3D structures. Optimization by 
METHOD genetic algorithm. 
REMARK 
REMARK Search results: 
REMARK           Name               ZScore Score Length   Documentation .. 
REMARK pdb90:1r69                +   6.29   8.08   63. !  Resolution=2.00   63 residues 434 REPRESSOR (AMINO-TERMINAL DOMAIN) (R1-69) 
REMARK pdb90:1slm                +   5.92   7.81  226. !  Resolution=1.90  226 residues MOL_ID: 1; 
REMARK pdb90:1ak0                +   4.44   6.74  264. !  Resolution=1.80  264 residues MOL_ID: 1; 
REMARK pdb90:1outB               +   4.17   6.54  146. ! Resolution=2.30  146 residues MOL_ID: 1; 
REMARK 
REMARK N-teminal part of T64 modeled on 1r69 using WHATIF  
REMARK Alignment: 
REMARK    
REMARK t0064.pep                  1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKV 
REMARK 1R69                       2 .ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRP..RFLPEL 
REMARK    
REMARK t0064.pep                 51 SAVLDVSVHTLLDEKHETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLD 
REMARK 1R69                      49 ASALGVSVDWLLNGT................................... 
REMARK    
REMARK t0064.pep                101 YQKWRKSQKEE 
REMARK 1R69                      64 ........... 
REMARK    
MODEL 1 
REMARK $Revision: 1.9 $ $Date: 1998/05/2 
REMARK alpha-kappa angles from -180,60 to 180,170 
REMARK MODEL     3756 rmsd =    0.00 quality=    83.50 
REMARK       1  -30.000 106.000   1.00 
REMARK       2   40.000 124.000   1.00 
REMARK       3   62.000  94.000   1.00 
REMARK       4   36.000  90.000   1.00 
REMARK       5   56.000 156.000   1.00 
REMARK       6   24.000  96.000   1.00 
REMARK       7  134.000  98.000   0.50 
REMARK       8   30.000 106.000   0.80 
REMARK       9   40.000  98.000   0.50 
REMARK      10   50.000  88.000   0.80 
REMARK      11   24.000 114.000   0.50 
REMARK      12   50.000  86.000   0.50 
REMARK      13   52.000  94.000   0.50 
REMARK      14   48.000  92.000   0.50 
REMARK      15   48.000  94.000   0.50 
REMARK      16   54.000  90.000   0.30 
REMARK      17   50.000  98.000   0.30 
REMARK      18   42.000  92.000   0.50 
REMARK      19   50.000  92.000   0.80 
REMARK      20   54.000  92.000   0.80 
REMARK      21   48.000  94.000   1.00 
REMARK      22   68.000  90.000   1.00 
REMARK      23  -96.000  90.000   1.00 
REMARK      24 -126.000  62.000   1.00 
REMARK      25  172.000  60.000   1.00 
REMARK      26 -124.000 110.000   1.00 
REMARK      27   56.000  90.000   1.00 
REMARK      28   30.000  92.000   1.00 
REMARK      29   60.000 108.000   1.00 
REMARK      30 -148.000 128.000   1.00 
REMARK      31   28.000  92.000   1.00 
REMARK      32  108.000 126.000   1.00 
REMARK      33   56.000  88.000   1.00 
REMARK      34   50.000  90.000   1.00 
REMARK      35   50.000  92.000   1.00 
REMARK      36   56.000  90.000   0.80 
REMARK      37   50.000  94.000   0.80 
REMARK      38   52.000  90.000   0.80 
REMARK      39   56.000  94.000   0.80 
REMARK      40   44.000  92.000   0.50 
REMARK      41  180.000  66.000   0.80 
REMARK      42   12.000 142.000   0.80 
REMARK      43 -134.000 154.000   0.80 
REMARK      44   18.000 122.000   0.80 
REMARK      45  152.000 118.000   0.80 
REMARK      46   64.000  80.000   0.80 
PARENT N/A 
REMARK $Revision: 1.9 $ $Date: 1998/05/2 
REMARK alpha-kappa angles from -180,60 to 180,170 
REMARK MODEL     3756 rmsd =    0.00 quality=    83.50 
REMARK       1  -30.000 106.000   1.00 
REMARK       2   40.000 124.000   1.00 
REMARK       3   62.000  94.000   1.00 
REMARK       4   36.000  90.000   1.00 
REMARK       5   56.000 156.000   1.00 
REMARK       6   24.000  96.000   1.00 
REMARK       7  134.000  98.000   0.50 
REMARK       8   30.000 106.000   0.80 
REMARK       9   40.000  98.000   0.50 
REMARK      10   50.000  88.000   0.80 
REMARK      11   24.000 114.000   0.50 
REMARK      12   50.000  86.000   0.50 
REMARK      13   52.000  94.000   0.50 
REMARK      14   48.000  92.000   0.50 
REMARK      15   48.000  94.000   0.50 
REMARK      16   54.000  90.000   0.30 
REMARK      17   50.000  98.000   0.30 
REMARK      18   42.000  92.000   0.50 
REMARK      19   50.000  92.000   0.80 
REMARK      20   54.000  92.000   0.80 
REMARK      21   48.000  94.000   1.00 
REMARK      22   68.000  90.000   1.00 
REMARK      23  -96.000  90.000   1.00 
REMARK      24 -126.000  62.000   1.00 
REMARK      25  172.000  60.000   1.00 
REMARK      26 -124.000 110.000   1.00 
REMARK      27   56.000  90.000   1.00 
REMARK      28   30.000  92.000   1.00 
REMARK      29   60.000 108.000   1.00 
REMARK      30 -148.000 128.000   1.00 
REMARK      31   28.000  92.000   1.00 
REMARK      32  108.000 126.000   1.00 
REMARK      33   56.000  88.000   1.00 
REMARK      34   50.000  90.000   1.00 
REMARK      35   50.000  92.000   1.00 
REMARK      36   56.000  90.000   0.80 
REMARK      37   50.000  94.000   0.80 
REMARK      38   52.000  90.000   0.80 
REMARK      39   56.000  94.000   0.80 
REMARK      40   44.000  92.000   0.50 
REMARK      41  180.000  66.000   0.80 
REMARK      42   12.000 142.000   0.80 
REMARK      43 -134.000 154.000   0.80 
REMARK      44   18.000 122.000   0.80 
REMARK      45  152.000 118.000   0.80 
REMARK      46   64.000  80.000   0.80 
ATOM      2  CA  HIS A  66       0.000   0.000   0.000  1.00  1.00 
ATOM      6  CA  GLU A  67       3.800   0.000   0.000  1.00  1.00 
ATOM      9  CB  GLU A  67       4.550  -0.764  -1.051  1.00  1.00 
ATOM     11  CA  THR A  68       5.925   3.150   0.000  1.00  1.00 
ATOM     14  CB  THR A  68       6.269   3.823  -1.296  1.00  1.00 
ATOM     16  CA  GLU A  69       3.666   4.994   2.437  1.00  1.00 
ATOM     19  CB  GLU A  69       2.255   5.324   2.049  1.00  1.00 
ATOM     21  CA  TYR A  70       4.380   2.366   5.087  1.00  1.00 
ATOM     24  CB  TYR A  70       3.505   1.152   5.194  1.00  1.00 
ATOM     26  CA  ASP A  71       6.485  -0.156   6.997  1.00  1.00 
ATOM     29  CB  ASP A  71       6.903  -1.436   6.338  1.00  1.00 
ATOM     31  CA  GLY A  72       9.247   2.275   7.951  1.00  1.00 
ATOM     35  CA  GLN A  73       7.227   5.485   7.724  1.00  1.00 
ATOM     38  CB  GLN A  73       5.743   5.425   7.517  1.00  1.00 
ATOM     40  CA  LEU A  74       8.058   7.469  10.857  1.00  1.00 
ATOM     43  CB  LEU A  74       7.160   7.388  12.056  1.00  1.00 
ATOM     45  CA  ASP A  75      11.604   6.200  11.362  1.00  1.00 
ATOM     48  CB  ASP A  75      11.845   4.929  12.120  1.00  1.00 
ATOM     50  CA  SER A  76      12.069   6.400   7.595  1.00  1.00 
ATOM     53  CB  SER A  76      11.457   5.357   6.708  1.00  1.00 
ATOM     55  CA  GLU A  77      11.026   9.727   6.084  1.00  1.00 
ATOM     58  CB  GLU A  77       9.712   9.848   5.371  1.00  1.00 
ATOM     60  CA  TRP A  78      11.642  11.186   9.538  1.00  1.00 
ATOM     63  CB  TRP A  78      10.647  10.956  10.637  1.00  1.00 
ATOM     65  CA  GLU A  79      15.088   9.622   9.876  1.00  1.00 
ATOM     68  CB  GLU A  79      15.222   8.152  10.138  1.00  1.00 
ATOM     70  CA  LYS A  80      16.202  11.030   6.527  1.00  1.00 
ATOM     73  CB  LYS A  80      15.761  10.373   5.253  1.00  1.00 
ATOM     75  CA  LEU A  81      14.933  14.533   7.277  1.00  1.00 
ATOM     78  CB  LEU A  81      13.469  14.840   7.165  1.00  1.00 
ATOM     80  CA  VAL A  82      16.633  14.422  10.674  1.00  1.00 
ATOM     83  CB  VAL A  82      16.078  13.552  11.762  1.00  1.00 
ATOM     85  CA  ARG A  83      20.134  13.545   9.484  1.00  1.00 
ATOM     88  CB  ARG A  83      20.450  12.145   9.049  1.00  1.00 
ATOM     90  CA  ASP A  84      20.103  16.338   6.908  1.00  1.00 
ATOM     93  CB  ASP A  84      19.471  16.113   5.566  1.00  1.00 
ATOM     95  CA  ALA A  85      18.481  18.755   9.352  1.00  1.00 
ATOM     98  CB  ALA A  85      17.020  18.636   9.666  1.00  1.00 
ATOM    100  CA  MET A  86      21.040  17.955  12.045  1.00  1.00 
ATOM    103  CB  MET A  86      21.002  16.630  12.747  1.00  1.00 
ATOM    105  CA  THR A  87      24.020  18.722   9.816  1.00  1.00 
ATOM    108  CB  THR A  87      24.466  17.723   8.790  1.00  1.00 
ATOM    110  CA  SER A  88      22.388  21.986   8.756  1.00  1.00 
ATOM    113  CB  SER A  88      21.033  21.973   8.114  1.00  1.00 
ATOM    115  CA  GLY A  89      22.849  23.357  12.270  1.00  1.00 
ATOM    119  CA  VAL A  90      19.496  21.802  11.388  1.00  1.00 
ATOM    122  CB  VAL A  90      19.113  20.469  11.960  1.00  1.00 
ATOM    124  CA  SER A  91      19.642  25.324  12.806  1.00  1.00 
ATOM    127  CB  SER A  91      20.638  26.309  12.268  1.00  1.00 
ATOM    129  CA  LYS A  92      16.204  26.934  12.644  1.00  1.00 
ATOM    132  CB  LYS A  92      15.433  27.185  13.906  1.00  1.00 
ATOM    134  CA  LYS A  93      17.653  29.829  10.654  1.00  1.00 
ATOM    137  CB  LYS A  93      18.572  30.811  11.319  1.00  1.00 
ATOM    139  CA  GLN A  94      19.029  27.488   7.996  1.00  1.00 
ATOM    142  CB  GLN A  94      20.456  27.032   8.064  1.00  1.00 
ATOM    144  CA  PHE A  95      16.752  24.451   7.815  1.00  1.00 
ATOM    147  CB  PHE A  95      16.660  23.512   8.981  1.00  1.00 
ATOM    149  CA  ARG A  96      13.045  24.352   6.985  1.00  1.00 
ATOM    152  CB  ARG A  96      12.598  24.284   5.555  1.00  1.00 
ATOM    154  CA  GLU A  97      12.480  21.362   9.262  1.00  1.00 
ATOM    157  CB  GLU A  97      12.434  19.978   8.685  1.00  1.00 
ATOM    159  CA  PHE A  98      14.512  20.492  12.352  1.00  1.00 
ATOM    162  CB  PHE A  98      15.870  21.097  12.552  1.00  1.00 
ATOM    164  CA  LEU A  99      11.525  21.547  14.451  1.00  1.00 
ATOM    167  CB  LEU A  99      11.140  22.995  14.533  1.00  1.00 
ATOM    169  CA  ASP A 100       9.336  19.067  12.581  1.00  1.00 
ATOM    172  CB  ASP A 100       8.868  19.379  11.190  1.00  1.00 
ATOM    174  CA  TYR A 101      11.829  16.252  13.126  1.00  1.00 
ATOM    177  CB  TYR A 101      13.087  16.196  12.311  1.00  1.00 
ATOM    179  CA  GLN A 102      11.959  17.084  16.831  1.00  1.00 
ATOM    182  CB  GLN A 102      12.614  18.353  17.293  1.00  1.00 
ATOM    184  CA  LYS A 103       8.208  16.717  17.317  1.00  1.00 
ATOM    187  CB  LYS A 103       7.281  17.795  16.840  1.00  1.00 
ATOM    189  CA  TRP A 104       8.312  13.343  15.573  1.00  1.00 
ATOM    192  CB  TRP A 104       8.489  13.273  14.085  1.00  1.00 
ATOM    194  CA  ARG A 105      11.095  11.990  17.779  1.00  1.00 
ATOM    197  CB  ARG A 105      12.486  12.538  17.653  1.00  1.00 
ATOM    199  CA  LYS A 106       9.100  12.669  20.941  1.00  1.00 
ATOM    202  CB  LYS A 106       9.085  14.045  21.537  1.00  1.00 
ATOM    204  CA  SER A 107       7.071  11.092  18.141  1.00  1.00 
ATOM    207  CB  SER A 107       7.536   9.816  17.504  1.00  1.00 
ATOM    209  CA  GLN A 108       3.571   9.875  17.299  1.00  1.00 
ATOM    212  CB  GLN A 108       3.322   8.416  17.057  1.00  1.00 
ATOM    214  CA  LYS A 109      -0.164   9.527  17.910  1.00  1.00 
ATOM    217  CB  LYS A 109      -1.130  10.404  17.170  1.00  1.00 
ATOM    219  CA  GLU A 110      -1.955   6.192  17.581  1.00  1.00 
ATOM    222  CB  GLU A 110      -2.873   5.945  16.421  1.00  1.00 
ATOM    224  CA  GLU A 111       0.143   3.025  17.650  1.00  1.00 
TER 
END 
