REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0064AL201_1_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : TATSUYA-AKUTSU 
REMARK  ---------------------------------------------------------- 
TARGET T0064  
AUTHOR 7648-2940-6918  
REMARK It seems that T0064 consists of two domains.   
METHOD We align a target sequence with structurally aligned sequences  
METHOD (i.e., multiple structure alignment), where a multiple structure  
METHOD alignment is computed from results of pairwise structure alignments  
METHOD for similar structures.   
METHOD Pairwise structure alignments are computed using a computer  
METHOD program STRALIGN [1] developed by the group-leader and they are  
METHOD combined into a multiple structure alignment using a method like  
METHOD center-star alignment.  
METHOD A simple dynamic programming procedure (Smith-Waterman like procedure)  
METHOD is used for computing an alignment between a target sequence and  
METHOD the aligned sequences.  
METHOD Finally, an alignment between a target and one of the aligned  
METHOD sequences (i.e., template sequence) is extracted and refined.  
METHOD Human knowledge is also used to find template structures and  
METHOD to refine alignments.  
METHOD  
METHOD [1] T. Akutsu: Protein structure alignment using dynamic programming  
METHOD and iterative alignment, IEICE Transactions on Information and Systems,  
METHOD vol. E79-D, pp. 1629--1636, 1996.  
METHOD  
METHOD Program code of STRALIGN is available via  
METHOD http://www.hgc.ims.u-tokyo.ac.jp/service/tooldoc/stralign/intro.html  
MODEL  1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1r69 
ATOM      1  N   ILE A   2     -10.402  -7.550  20.932  1.00  0.00              
ATOM      2  CA  ILE A   2     -10.398  -6.112  20.640  1.00  0.00              
ATOM      3  C   ILE A   2     -11.298  -5.287  21.542  1.00  0.00              
ATOM      4  O   ILE A   2     -10.917  -4.143  21.832  1.00  0.00              
ATOM      5  N   GLY A   3     -12.427  -5.808  21.965  1.00  0.00              
ATOM      6  CA  GLY A   3     -13.366  -5.095  22.843  1.00  0.00              
ATOM      7  C   GLY A   3     -12.745  -4.833  24.214  1.00  0.00              
ATOM      8  O   GLY A   3     -12.891  -3.724  24.761  1.00  0.00              
ATOM      9  N   GLN A   4     -12.056  -5.841  24.738  1.00  0.00              
ATOM     10  CA  GLN A   4     -11.428  -5.660  26.066  1.00  0.00              
ATOM     11  C   GLN A   4     -10.217  -4.750  25.924  1.00  0.00              
ATOM     12  O   GLN A   4     -10.003  -3.894  26.790  1.00  0.00              
ATOM     13  N   ARG A   5      -9.455  -4.893  24.851  1.00  0.00              
ATOM     14  CA  ARG A   5      -8.264  -4.075  24.581  1.00  0.00              
ATOM     15  C   ARG A   5      -8.603  -2.615  24.310  1.00  0.00              
ATOM     16  O   ARG A   5      -7.810  -1.741  24.685  1.00  0.00              
ATOM     17  N   ILE A   6      -9.735  -2.360  23.685  1.00  0.00              
ATOM     18  CA  ILE A   6     -10.186  -0.999  23.381  1.00  0.00              
ATOM     19  C   ILE A   6     -10.631  -0.311  24.680  1.00  0.00              
ATOM     20  O   ILE A   6     -10.294   0.855  24.923  1.00  0.00              
ATOM     21  N   LYS A   7     -11.395  -1.045  25.469  1.00  0.00              
ATOM     22  CA  LYS A   7     -11.909  -0.521  26.747  1.00  0.00              
ATOM     23  C   LYS A   7     -10.734  -0.163  27.643  1.00  0.00              
ATOM     24  O   LYS A   7     -10.605   0.948  28.163  1.00  0.00              
ATOM     25  N   GLN A   8      -9.828  -1.103  27.794  1.00  0.00              
ATOM     26  CA  GLN A   8      -8.621  -0.998  28.604  1.00  0.00              
ATOM     27  C   GLN A   8      -7.775   0.225  28.270  1.00  0.00              
ATOM     28  O   GLN A   8      -7.316   0.911  29.209  1.00  0.00              
ATOM     29  N   TYR A   9      -7.559   0.467  26.994  1.00  0.00              
ATOM     30  CA  TYR A   9      -6.756   1.611  26.546  1.00  0.00              
ATOM     31  C   TYR A   9      -7.494   2.929  26.687  1.00  0.00              
ATOM     32  O   TYR A   9      -6.838   3.901  27.088  1.00  0.00              
ATOM     33  N   ARG A  10      -8.776   2.945  26.345  1.00  0.00              
ATOM     34  CA  ARG A  10      -9.472   4.249  26.488  1.00  0.00              
ATOM     35  C   ARG A  10      -9.472   4.669  27.956  1.00  0.00              
ATOM     36  O   ARG A  10      -9.312   5.863  28.222  1.00  0.00              
ATOM     37  N   LYS A  11      -9.605   3.726  28.871  1.00  0.00              
ATOM     38  CA  LYS A  11      -9.636   4.024  30.314  1.00  0.00              
ATOM     39  C   LYS A  11      -8.320   4.598  30.797  1.00  0.00              
ATOM     40  O   LYS A  11      -8.284   5.591  31.554  1.00  0.00              
ATOM     41  N   GLU A  12      -7.246   4.007  30.319  1.00  0.00              
ATOM     42  CA  GLU A  12      -5.870   4.408  30.637  1.00  0.00              
ATOM     43  C   GLU A  12      -5.582   5.828  30.157  1.00  0.00              
ATOM     44  O   GLU A  12      -4.748   6.554  30.739  1.00  0.00              
ATOM     45  N   LYS A  13      -6.273   6.224  29.098  1.00  0.00              
ATOM     46  CA  LYS A  13      -6.141   7.537  28.469  1.00  0.00              
ATOM     47  C   LYS A  13      -7.125   8.565  29.017  1.00  0.00              
ATOM     48  O   LYS A  13      -7.067   9.753  28.682  1.00  0.00              
ATOM     49  N   GLY A  14      -8.042   8.103  29.825  1.00  0.00              
ATOM     50  CA  GLY A  14      -9.099   8.870  30.471  1.00  0.00              
ATOM     51  C   GLY A  14     -10.205   9.256  29.495  1.00  0.00              
ATOM     52  O   GLY A  14     -10.700  10.378  29.598  1.00  0.00              
ATOM     53  N   TYR A  15     -10.576   8.372  28.594  1.00  0.00              
ATOM     54  CA  TYR A  15     -11.617   8.633  27.594  1.00  0.00              
ATOM     55  C   TYR A  15     -12.868   7.796  27.851  1.00  0.00              
ATOM     56  O   TYR A  15     -12.768   6.616  28.207  1.00  0.00              
ATOM     57  N   SER A  16     -14.010   8.435  27.658  1.00  0.00              
ATOM     58  CA  SER A  16     -15.306   7.725  27.837  1.00  0.00              
ATOM     59  C   SER A  16     -15.655   7.340  26.393  1.00  0.00              
ATOM     60  O   SER A  16     -14.908   7.774  25.497  1.00  0.00              
ATOM     61  N   LEU A  17     -16.708   6.594  26.164  1.00  0.00              
ATOM     62  CA  LEU A  17     -17.058   6.190  24.785  1.00  0.00              
ATOM     63  C   LEU A  17     -17.372   7.343  23.840  1.00  0.00              
ATOM     64  O   LEU A  17     -17.047   7.234  22.649  1.00  0.00              
ATOM     65  N   SER A  18     -18.003   8.374  24.353  1.00  0.00              
ATOM     66  CA  SER A  18     -18.392   9.532  23.539  1.00  0.00              
ATOM     67  C   SER A  18     -17.171  10.278  23.035  1.00  0.00              
ATOM     68  O   SER A  18     -17.174  10.732  21.877  1.00  0.00              
ATOM     69  N   GLU A  19     -16.177  10.400  23.877  1.00  0.00              
ATOM     70  CA  GLU A  19     -14.912  11.072  23.580  1.00  0.00              
ATOM     71  C   GLU A  19     -14.095  10.313  22.551  1.00  0.00              
ATOM     72  O   GLU A  19     -13.476  10.951  21.676  1.00  0.00              
ATOM     73  N   LEU A  20     -14.111   8.996  22.676  1.00  0.00              
ATOM     74  CA  LEU A  20     -13.401   8.104  21.752  1.00  0.00              
ATOM     75  C   LEU A  20     -14.087   8.146  20.376  1.00  0.00              
ATOM     76  O   LEU A  20     -13.357   8.142  19.366  1.00  0.00              
ATOM     77  N   ALA A  21     -15.403   8.184  20.353  1.00  0.00              
ATOM     78  CA  ALA A  21     -16.199   8.256  19.125  1.00  0.00              
ATOM     79  C   ALA A  21     -15.839   9.517  18.343  1.00  0.00              
ATOM     80  O   ALA A  21     -15.543   9.433  17.145  1.00  0.00              
ATOM     81  N   GLU A  22     -15.832  10.667  19.000  1.00  0.00              
ATOM     82  CA  GLU A  22     -15.494  11.953  18.392  1.00  0.00              
ATOM     83  C   GLU A  22     -14.046  11.988  17.907  1.00  0.00              
ATOM     84  O   GLU A  22     -13.749  12.649  16.892  1.00  0.00              
ATOM     85  N   LYS A  23     -13.137  11.331  18.604  1.00  0.00              
ATOM     86  CA  LYS A  23     -11.711  11.296  18.219  1.00  0.00              
ATOM     87  C   LYS A  23     -11.518  10.449  16.959  1.00  0.00              
ATOM     88  O   LYS A  23     -10.700  10.764  16.078  1.00  0.00              
ATOM     89  N   ALA A  24     -12.281   9.382  16.884  1.00  0.00              
ATOM     90  CA  ALA A  24     -12.262   8.435  15.755  1.00  0.00              
ATOM     91  C   ALA A  24     -13.091   9.002  14.606  1.00  0.00              
ATOM     92  O   ALA A  24     -12.733   8.778  13.441  1.00  0.00              
ATOM     93  N   GLY A  25     -14.144   9.732  14.914  1.00  0.00              
ATOM     94  CA  GLY A  25     -15.028  10.338  13.915  1.00  0.00              
ATOM     95  C   GLY A  25     -16.145   9.377  13.523  1.00  0.00              
ATOM     96  O   GLY A  25     -16.572   9.312  12.365  1.00  0.00              
ATOM     97  N   VAL A  26     -16.620   8.627  14.501  1.00  0.00              
ATOM     98  CA  VAL A  26     -17.700   7.651  14.325  1.00  0.00              
ATOM     99  C   VAL A  26     -18.824   7.974  15.312  1.00  0.00              
ATOM    100  O   VAL A  26     -18.790   9.012  15.981  1.00  0.00              
ATOM    101  N   ALA A  27     -19.803   7.099  15.358  1.00  0.00              
ATOM    102  CA  ALA A  27     -20.986   7.204  16.204  1.00  0.00              
ATOM    103  C   ALA A  27     -20.720   6.581  17.570  1.00  0.00              
ATOM    104  O   ALA A  27     -19.822   5.734  17.685  1.00  0.00              
ATOM    105  N   LYS A  28     -21.500   7.012  18.552  1.00  0.00              
ATOM    106  CA  LYS A  28     -21.349   6.461  19.921  1.00  0.00              
ATOM    107  C   LYS A  28     -21.656   4.963  19.881  1.00  0.00              
ATOM    108  O   LYS A  28     -20.934   4.159  20.475  1.00  0.00              
ATOM    109  N   SER A  29     -22.688   4.591  19.159  1.00  0.00              
ATOM    110  CA  SER A  29     -23.188   3.240  18.947  1.00  0.00              
ATOM    111  C   SER A  29     -22.139   2.322  18.329  1.00  0.00              
ATOM    112  O   SER A  29     -22.112   1.135  18.703  1.00  0.00              
ATOM    113  N   TYR A  30     -21.301   2.794  17.437  1.00  0.00              
ATOM    114  CA  TYR A  30     -20.250   1.992  16.811  1.00  0.00              
ATOM    115  C   TYR A  30     -19.221   1.587  17.877  1.00  0.00              
ATOM    116  O   TYR A  30     -18.693   0.470  17.822  1.00  0.00              
ATOM    117  N   LEU A  31     -18.943   2.522  18.782  1.00  0.00              
ATOM    118  CA  LEU A  31     -17.984   2.292  19.859  1.00  0.00              
ATOM    119  C   LEU A  31     -18.514   1.235  20.842  1.00  0.00              
ATOM    120  O   LEU A  31     -17.774   0.368  21.311  1.00  0.00              
ATOM    121  N   SER A  32     -19.792   1.341  21.126  1.00  0.00              
ATOM    122  CA  SER A  32     -20.517   0.454  22.024  1.00  0.00              
ATOM    123  C   SER A  32     -20.522  -0.972  21.502  1.00  0.00              
ATOM    124  O   SER A  32     -20.299  -1.918  22.273  1.00  0.00              
ATOM    125  N   SER A  33     -20.767  -1.097  20.212  1.00  0.00              
ATOM    126  CA  SER A  33     -20.806  -2.392  19.522  1.00  0.00              
ATOM    127  C   SER A  33     -19.442  -3.064  19.488  1.00  0.00              
ATOM    128  O   SER A  33     -19.358  -4.302  19.531  1.00  0.00              
ATOM    129  N   ILE A  34     -18.393  -2.284  19.405  1.00  0.00              
ATOM    130  CA  ILE A  34     -17.022  -2.831  19.384  1.00  0.00              
ATOM    131  C   ILE A  34     -16.652  -3.292  20.793  1.00  0.00              
ATOM    132  O   ILE A  34     -16.017  -4.344  20.957  1.00  0.00              
ATOM    133  N   GLU A  35     -17.069  -2.543  21.799  1.00  0.00              
ATOM    134  CA  GLU A  35     -16.796  -2.867  23.205  1.00  0.00              
ATOM    135  C   GLU A  35     -17.641  -4.005  23.736  1.00  0.00              
ATOM    136  O   GLU A  35     -17.223  -4.610  24.735  1.00  0.00              
ATOM    137  N   ARG A  36     -18.729  -4.333  23.076  1.00  0.00              
ATOM    138  CA  ARG A  36     -19.650  -5.419  23.423  1.00  0.00              
ATOM    139  C   ARG A  36     -19.428  -6.643  22.521  1.00  0.00              
ATOM    140  O   ARG A  36     -20.228  -7.597  22.495  1.00  0.00              
ATOM    141  N   ASN A  37     -18.355  -6.641  21.771  1.00  0.00              
ATOM    142  CA  ASN A  37     -17.929  -7.668  20.843  1.00  0.00              
ATOM    143  C   ASN A  37     -18.840  -7.913  19.656  1.00  0.00              
ATOM    144  O   ASN A  37     -18.788  -9.017  19.089  1.00  0.00              
ATOM    145  N   LEU A  38     -19.643  -6.954  19.247  1.00  0.00              
ATOM    146  CA  LEU A  38     -20.576  -7.067  18.122  1.00  0.00              
ATOM    147  C   LEU A  38     -19.924  -6.819  16.767  1.00  0.00              
ATOM    148  O   LEU A  38     -20.406  -7.333  15.747  1.00  0.00              
ATOM    149  N   GLN A  39     -18.858  -6.054  16.758  1.00  0.00              
ATOM    150  CA  GLN A  39     -18.099  -5.724  15.541  1.00  0.00              
ATOM    151  C   GLN A  39     -16.629  -5.957  15.878  1.00  0.00              
ATOM    152  O   GLN A  39     -16.107  -5.490  16.906  1.00  0.00              
ATOM    153  N   THR A  40     -15.975  -6.737  15.037  1.00  0.00              
ATOM    154  CA  THR A  40     -14.566  -7.099  15.213  1.00  0.00              
ATOM    155  C   THR A  40     -13.645  -6.450  14.197  1.00  0.00              
ATOM    156  O   THR A  40     -12.433  -6.385  14.487  1.00  0.00              
ATOM    157  N   ASN A  41     -14.200  -6.011  13.079  1.00  0.00              
ATOM    158  CA  ASN A  41     -13.396  -5.377  12.021  1.00  0.00              
ATOM    159  C   ASN A  41     -14.033  -4.123  11.440  1.00  0.00              
ATOM    160  O   ASN A  41     -14.436  -4.099  10.270  1.00  0.00              
ATOM    161  N   PRO A  42     -14.109  -3.082  12.256  1.00  0.00              
ATOM    162  CA  PRO A  42     -14.698  -1.805  11.829  1.00  0.00              
ATOM    163  C   PRO A  42     -13.882  -1.236  10.679  1.00  0.00              
ATOM    164  O   PRO A  42     -12.729  -1.650  10.476  1.00  0.00              
ATOM    165  N   GLN A  45     -14.479  -0.300   9.965  1.00  0.00              
ATOM    166  CA  GLN A  45     -13.833   0.352   8.819  1.00  0.00              
ATOM    167  C   GLN A  45     -12.749   1.308   9.314  1.00  0.00              
ATOM    168  O   GLN A  45     -11.765   1.560   8.610  1.00  0.00              
ATOM    169  N   PHE A  46     -12.965   1.786  10.523  1.00  0.00              
ATOM    170  CA  PHE A  46     -12.065   2.746  11.165  1.00  0.00              
ATOM    171  C   PHE A  46     -10.954   2.163  12.019  1.00  0.00              
ATOM    172  O   PHE A  46     -10.605   2.861  12.993  1.00  0.00              
ATOM    173  N   LEU A  47     -10.375   1.031  11.708  1.00  0.00              
ATOM    174  CA  LEU A  47      -9.300   0.452  12.522  1.00  0.00              
ATOM    175  C   LEU A  47      -8.045   1.299  12.643  1.00  0.00              
ATOM    176  O   LEU A  47      -7.526   1.400  13.768  1.00  0.00              
ATOM    177  N   GLU A  48      -7.727   4.544  12.389  1.00  0.00              
ATOM    178  CA  GLU A  48      -8.046   5.736  13.186  1.00  0.00              
ATOM    179  C   GLU A  48      -8.209   5.367  14.670  1.00  0.00              
ATOM    180  O   GLU A  48      -7.940   6.194  15.555  1.00  0.00              
ATOM    181  N   LYS A  49      -8.669   4.150  14.906  1.00  0.00              
ATOM    182  CA  LYS A  49      -8.884   3.652  16.278  1.00  0.00              
ATOM    183  C   LYS A  49      -7.535   3.420  16.951  1.00  0.00              
ATOM    184  O   LYS A  49      -7.375   3.780  18.131  1.00  0.00              
ATOM    185  N   VAL A  50      -6.622   2.848  16.176  1.00  0.00              
ATOM    186  CA  VAL A  50      -5.274   2.563  16.684  1.00  0.00              
ATOM    187  C   VAL A  50      -4.545   3.840  17.076  1.00  0.00              
ATOM    188  O   VAL A  50      -3.869   3.875  18.109  1.00  0.00              
ATOM    189  N   SER A  51      -4.673   4.843  16.245  1.00  0.00              
ATOM    190  CA  SER A  51      -4.059   6.162  16.390  1.00  0.00              
ATOM    191  C   SER A  51      -4.604   6.934  17.583  1.00  0.00              
ATOM    192  O   SER A  51      -3.812   7.548  18.317  1.00  0.00              
ATOM    193  N   ALA A  52      -5.905   6.917  17.774  1.00  0.00              
ATOM    194  CA  ALA A  52      -6.564   7.590  18.896  1.00  0.00              
ATOM    195  C   ALA A  52      -6.222   6.940  20.234  1.00  0.00              
ATOM    196  O   ALA A  52      -6.237   7.617  21.282  1.00  0.00              
ATOM    197  N   LEU A  54      -5.917   5.653  20.228  1.00  0.00              
ATOM    198  CA  LEU A  54      -5.558   4.848  21.391  1.00  0.00              
ATOM    199  C   LEU A  54      -4.044   4.767  21.609  1.00  0.00              
ATOM    200  O   LEU A  54      -3.582   4.221  22.625  1.00  0.00              
ATOM    201  N   ASP A  55      -3.287   5.301  20.672  1.00  0.00              
ATOM    202  CA  ASP A  55      -1.827   5.299  20.738  1.00  0.00              
ATOM    203  C   ASP A  55      -1.256   3.893  20.701  1.00  0.00              
ATOM    204  O   ASP A  55      -0.280   3.596  21.415  1.00  0.00              
ATOM    205  N   VAL A  56      -1.857   3.057  19.874  1.00  0.00              
ATOM    206  CA  VAL A  56      -1.452   1.667  19.683  1.00  0.00              
ATOM    207  C   VAL A  56      -1.399   1.325  18.182  1.00  0.00              
ATOM    208  O   VAL A  56      -1.829   2.103  17.330  1.00  0.00              
ATOM    209  N   SER A  57      -0.885   0.139  17.925  1.00  0.00              
ATOM    210  CA  SER A  57      -0.761  -0.416  16.580  1.00  0.00              
ATOM    211  C   SER A  57      -2.062  -1.164  16.283  1.00  0.00              
ATOM    212  O   SER A  57      -2.805  -1.499  17.219  1.00  0.00              
ATOM    213  N   VAL A  58      -2.271  -1.413  15.004  1.00  0.00              
ATOM    214  CA  VAL A  58      -3.476  -2.151  14.579  1.00  0.00              
ATOM    215  C   VAL A  58      -3.322  -3.630  14.938  1.00  0.00              
ATOM    216  O   VAL A  58      -4.289  -4.287  15.329  1.00  0.00              
END
