PFRMAT TS 
TARGET T0063 
AUTHOR 1179-2476-7283 
REMARK 
METHOD  Basic method is AMMP with kohonen neural net 
METHOD  alpha carbons only with 
METHOD  theta ci-1,ci,ci+1 = 90 
METHOD  all atoms have a ~5A vdw exclusion 
METHOD  hydrophobic have a steped attractive potential 
METHOD  based on distances in real structures 
METHOD  hydrophobics = a,c,m,y,f,l,i,v 
METHOD  AMMP script follows 
METHOD 
METHOD echo off; 
METHOD read tar63.ca.fold; 
METHOD use none bond angle step nonbon; 
METHOD setf mxdq 1.; 
METHOD kohonen 200 20 1; 
METHOD cngdel 100; 
METHOD v_maxwell 300; tpac 1000 .00001 300; 
METHOD tpac 10000 .00001 300; 
METHOD cngdel 100; 
METHOD echo off; output tar63.ca.fold; dump atom bond angle step; close;  
METHOD echo; 
METHOD exit; 
METHOD   
METHOD models 1,2 are enantiomorphs as this method is achiral 
METHOD models 3,4 are enantiomorphs as this method is achiral 
METHOD Therefore only one of 1,2 or 3,4 is "correct" 
METHOD but i can't tell which  
METHOD models 1,2 are derived from 3,4 by rearranging the nterminal 
METHOD and repeating the minimization (cngdel afterwards as above) 
METHOD 
MODEL 1 
PARENT N/A 
ATOM      1  CA  MET     1     168.796  28.192 161.136  1.00 10.00 
ATOM      2  CA  VAL     2     170.241  24.680 161.720  1.00 10.00 
ATOM      3  CA  LEU     3     167.909  22.311 159.825  1.00 10.00 
ATOM      4  CA  LYS     4     166.649  20.800 163.119  1.00 10.00 
ATOM      5  CA  TRP     5     163.588  19.315 161.318  1.00 10.00 
ATOM      6  CA  VAL     6     163.793  21.725 158.517  1.00 10.00 
ATOM      7  CA  MET     7     165.180  19.037 156.146  1.00 10.00 
ATOM      8  CA  SER     8     164.785  15.929 158.387  1.00 10.00 
ATOM      9  CA  THR     9     168.152  16.740 160.073  1.00 10.00 
ATOM     10  CA  LYS    10     170.013  16.145 156.757  1.00 10.00 
ATOM     11  CA  TYR    11     169.790  19.891 155.930  1.00 10.00 
ATOM     12  CA  VAL    12     168.161  18.900 152.648  1.00 10.00 
ATOM     13  CA  GLU    13     171.339  17.553 151.017  1.00 10.00 
ATOM     14  CA  ALA    14     171.224  20.876 149.133  1.00 10.00 
ATOM     15  CA  GLY    15     174.415  20.304 147.103  1.00 10.00 
ATOM     16  CA  GLU    16     174.725  24.084 146.372  1.00 10.00 
ATOM     17  CA  LEU    17     173.324  25.125 149.829  1.00 10.00 
ATOM     18  CA  LYS    18     176.965  25.449 151.120  1.00 10.00 
ATOM     19  CA  GLU    19     178.024  21.915 150.000  1.00 10.00 
ATOM     20  CA  GLY    20     175.307  19.939 151.920  1.00 10.00 
ATOM     21  CA  SER    21     174.223  22.949 154.019  1.00 10.00 
ATOM     22  CA  TYR    22     170.500  23.122 152.849  1.00 10.00 
ATOM     23  CA  VAL    23     170.504  26.716 153.883  1.00 10.00 
ATOM     24  CA  VAL    24     169.758  27.950 150.510  1.00 10.00 
ATOM     25  CA  ILE    25     171.199  30.890 152.432  1.00 10.00 
ATOM     26  CA  ASP    26     174.627  29.193 152.782  1.00 10.00 
ATOM     27  CA  GLY    27     176.527  32.489 152.320  1.00 10.00 
ATOM     28  CA  GLU    28     177.794  31.081 148.982  1.00 10.00 
ATOM     29  CA  PRO    29     175.102  33.257 147.330  1.00 10.00 
ATOM     30  CA  CYS    30     172.412  30.577 148.000  1.00 10.00 
ATOM     31  CA  ARG    31     171.351  31.117 144.368  1.00 10.00 
ATOM     32  CA  VAL    32     168.175  29.293 145.419  1.00 10.00 
ATOM     33  CA  VAL    33     170.378  26.380 146.399  1.00 10.00 
ATOM     34  CA  GLU    34     170.692  25.131 142.777  1.00 10.00 
ATOM     35  CA  ILE    35     166.875  25.133 142.551  1.00 10.00 
ATOM     36  CA  GLU    36     167.060  27.694 139.713  1.00 10.00 
ATOM     37  CA  LYS    37     163.943  26.020 138.227  1.00 10.00 
ATOM     38  CA  SER    38     166.255  23.439 136.556  1.00 10.00 
ATOM     39  CA  LYS    39     165.691  20.980 139.464  1.00 10.00 
ATOM     40  CA  THR    40     167.689  18.323 137.526  1.00 10.00 
ATOM     41  CA  GLY    41     167.078  15.758 140.329  1.00 10.00 
ATOM     42  CA  LYS    42     170.875  15.202 140.572  1.00 10.00 
ATOM     43  CA  HIS    43     171.143  18.542 142.463  1.00 10.00 
ATOM     44  CA  GLY    44     171.215  16.657 145.827  1.00 10.00 
ATOM     45  CA  SER    45     167.407  16.119 145.740  1.00 10.00 
ATOM     46  CA  ALA    46     166.691  19.080 148.139  1.00 10.00 
ATOM     47  CA  LYS    47     168.154  21.378 145.504  1.00 10.00 
ATOM     48  CA  ALA    48     167.819  23.611 148.569  1.00 10.00 
ATOM     49  CA  ARG    49     165.486  25.666 146.558  1.00 10.00 
ATOM     50  CA  ILE    50     165.596  28.363 149.066  1.00 10.00 
ATOM     51  CA  VAL    51     163.209  26.694 151.207  1.00 10.00 
ATOM     52  CA  ALA    52     166.438  25.518 152.157  1.00 10.00 
ATOM     53  CA  VAL    53     165.175  21.978 151.835  1.00 10.00 
ATOM     54  CA  GLY    54     163.269  22.564 148.705  1.00 10.00 
ATOM     55  CA  VAL    55     160.335  23.462 150.890  1.00 10.00 
ATOM     56  CA  PHE    56     159.757  19.701 151.062  1.00 10.00 
ATOM     57  CA  ASP    57     155.958  19.585 150.389  1.00 10.00 
ATOM     58  CA  GLY    58     156.634  17.130 147.501  1.00 10.00 
ATOM     59  CA  GLY    59     154.320  14.447 149.029  1.00 10.00 
ATOM     60  CA  LYS    60     156.192  14.471 152.395  1.00 10.00 
ATOM     61  CA  ARG    61     159.533  14.104 150.548  1.00 10.00 
ATOM     62  CA  THR    62     161.480  14.870 153.788  1.00 10.00 
ATOM     63  CA  LEU    63     163.647  17.563 152.059  1.00 10.00 
ATOM     64  CA  SER    64     163.617  15.599 148.730  1.00 10.00 
ATOM     65  CA  LEU    65     161.830  18.679 147.294  1.00 10.00 
ATOM     66  CA  PRO    66     163.542  18.840 143.884  1.00 10.00 
ATOM     67  CA  VAL    67     162.839  22.622 144.140  1.00 10.00 
ATOM     68  CA  ASP    68     159.096  22.094 143.321  1.00 10.00 
ATOM     69  CA  ALA    69     158.560  22.240 147.107  1.00 10.00 
ATOM     70  CA  GLN    70     155.002  23.645 147.097  1.00 10.00 
ATOM     71  CA  VAL    71     156.001  24.453 150.734  1.00 10.00 
ATOM     72  CA  GLU    72     152.758  26.365 151.369  1.00 10.00 
ATOM     73  CA  VAL    73     154.991  28.293 153.817  1.00 10.00 
ATOM     74  CA  PRO    74     154.954  25.294 156.152  1.00 10.00 
ATOM     75  CA  ILE    75     158.709  26.062 156.069  1.00 10.00 
ATOM     76  CA  ILE    76     159.729  23.188 158.299  1.00 10.00 
ATOM     77  CA  GLU    77     156.237  21.949 159.310  1.00 10.00 
ATOM     78  CA  LYS    78     157.822  18.643 160.523  1.00 10.00 
ATOM     79  CA  PHE    79     160.259  18.606 157.545  1.00 10.00 
ATOM     80  CA  THR    80     157.195  18.481 155.263  1.00 10.00 
ATOM     81  CA  ALA    81     157.970  22.121 154.352  1.00 10.00 
ATOM     82  CA  GLN    82     161.741  21.462 154.556  1.00 10.00 
ATOM     83  CA  ILE    83     163.168  24.965 155.354  1.00 10.00 
ATOM     84  CA  LEU    84     166.612  23.295 155.704  1.00 10.00 
ATOM     85  CA  SER    85     168.256  26.119 157.430  1.00 10.00 
ATOM     86  CA  VAL    86     171.459  24.026 157.425  1.00 10.00 
ATOM     87  CA  SER    87     174.078  26.819 156.913  1.00 10.00 
ATOM     88  CA  GLY    88     173.801  28.169 160.473  1.00 10.00 
ATOM     89  CA  ASP    89     173.099  31.575 158.839  1.00 10.00 
ATOM     90  CA  VAL    90     169.925  30.215 157.101  1.00 10.00 
ATOM     91  CA  ILE    91     168.199  33.299 158.558  1.00 10.00 
ATOM     92  CA  GLN    92     165.644  31.449 160.696  1.00 10.00 
ATOM     93  CA  LEU    93     165.157  29.208 157.595  1.00 10.00 
ATOM     94  CA  MET    94     161.816  27.836 158.681  1.00 10.00 
ATOM     95  CA  ASP    95     162.625  28.360 162.327  1.00 10.00 
ATOM     96  CA  MET    96     165.052  25.800 160.929  1.00 10.00 
ATOM     97  CA  ARG    97     166.206  25.437 164.593  1.00 10.00 
ATOM     98  CA  ASP    98     162.574  24.971 165.785  1.00 10.00 
ATOM     99  CA  TYR    99     161.619  23.414 162.386  1.00 10.00 
ATOM    100  CA  LYS   100     158.597  21.846 164.182  1.00 10.00 
ATOM    101  CA  THR   101     156.971  25.317 164.536  1.00 10.00 
ATOM    102  CA  ILE   102     158.295  26.328 161.063  1.00 10.00 
ATOM    103  CA  GLU   103     154.944  27.949 160.254  1.00 10.00 
ATOM    104  CA  VAL   104     157.339  29.841 157.983  1.00 10.00 
ATOM    105  CA  PRO   105     158.840  31.328 161.171  1.00 10.00 
ATOM    106  CA  MET   106     161.552  32.378 158.738  1.00 10.00 
ATOM    107  CA  LYS   107     159.206  35.273 157.913  1.00 10.00 
ATOM    108  CA  TYR   108     158.147  33.011 155.023  1.00 10.00 
ATOM    109  CA  VAL   109     160.961  34.572 153.070  1.00 10.00 
ATOM    110  CA  GLU   110     159.390  38.065 153.690  1.00 10.00 
ATOM    111  CA  GLU   111     159.886  39.091 150.017  1.00 10.00 
ATOM    112  CA  GLU   112     157.810  36.051 148.923  1.00 10.00 
ATOM    113  CA  ALA   113     161.122  34.147 148.439  1.00 10.00 
ATOM    114  CA  LYS   114     161.327  35.770 144.945  1.00 10.00 
ATOM    115  CA  GLY   115     164.623  37.520 145.865  1.00 10.00 
ATOM    116  CA  ARG   116     166.557  34.510 144.443  1.00 10.00 
ATOM    117  CA  LEU   117     164.971  32.324 147.178  1.00 10.00 
ATOM    118  CA  ALA   118     168.054  32.128 149.416  1.00 10.00 
ATOM    119  CA  PRO   119     169.762  35.181 147.838  1.00 10.00 
ATOM    120  CA  GLY   120     168.329  37.499 150.550  1.00 10.00 
ATOM    121  CA  ALA   121     165.142  35.366 150.937  1.00 10.00 
ATOM    122  CA  GLU   122     164.607  37.231 154.257  1.00 10.00 
ATOM    123  CA  VAL   123     164.606  33.715 155.745  1.00 10.00 
ATOM    124  CA  GLU   124     167.921  33.386 154.022  1.00 10.00 
ATOM    125  CA  VAL   125     166.699  29.793 153.522  1.00 10.00 
ATOM    126  CA  TRP   126     163.540  31.122 151.915  1.00 10.00 
ATOM    127  CA  GLN   127     161.418  29.695 154.676  1.00 10.00 
ATOM    128  CA  ILE   128     159.137  27.992 152.158  1.00 10.00 
ATOM    129  CA  LEU   129     158.497  31.479 150.878  1.00 10.00 
ATOM    130  CA  ASP   130     154.653  31.692 150.544  1.00 10.00 
ATOM    131  CA  ARG   131     155.207  31.140 146.799  1.00 10.00 
ATOM    132  CA  TYR   132     156.987  28.021 148.101  1.00 10.00 
ATOM    133  CA  LYS   133     158.091  26.896 144.670  1.00 10.00 
ATOM    134  CA  ILE   134     161.071  26.022 146.889  1.00 10.00 
ATOM    135  CA  ILE   135     161.342  29.555 148.175  1.00 10.00 
ATOM    136  CA  ARG   136     160.524  30.940 144.720  1.00 10.00 
ATOM    137  CA  VAL   137     163.664  28.927 144.057  1.00 10.00 
TER 
END    
