PFRMAT SS 
TARGET T0063 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded3-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment hypusine-trimmed-retrain.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 3.92612 
METHOD 
MODEL 1 
M C 0.88 
V C 0.80 
L C 0.78 
K C 0.79 
W C 0.79 
V C 0.66 
M C 0.63 
S C 0.64 
T C 0.75 
K C 0.79 
Y C 0.73 
V C 0.47 
E C 0.46 
A H 0.58 
G H 0.70 
E H 0.75 
L H 0.63 
K C 0.46 
E C 0.74 
G C 0.94 
S C 0.80 
Y E 0.89 
V E 0.98 
V E 0.99 
I E 0.98 
D E 0.84 
G C 0.77 
E C 0.93 
P C 0.88 
C C 0.50 
R E 0.89 
V E 0.98 
V E 0.98 
E E 0.98 
I E 0.94 
E E 0.82 
K E 0.55 
S C 0.68 
K C 0.76 
T C 0.83 
G C 0.84 
K C 0.73 
H C 0.61 
G C 0.61 
S C 0.57 
A E 0.58 
K E 0.75 
A E 0.81 
R E 0.87 
I E 0.88 
V E 0.91 
A E 0.92 
V E 0.88 
G E 0.83 
V E 0.77 
F E 0.57 
D C 0.63 
G C 0.82 
G C 0.79 
K C 0.54 
R E 0.55 
T E 0.61 
L E 0.62 
S E 0.50 
L C 0.71 
P C 0.86 
V C 0.85 
D C 0.83 
A C 0.80 
Q C 0.85 
V C 0.70 
E C 0.51 
V C 0.56 
P C 0.65 
I C 0.43 
I H 0.42 
E C 0.49 
K C 0.65 
F C 0.71 
T C 0.61 
A E 0.47 
Q E 0.76 
I E 0.87 
L E 0.85 
S E 0.75 
V E 0.50 
S C 0.75 
G C 0.90 
D C 0.93 
V C 0.66 
I E 0.57 
Q E 0.76 
L E 0.83 
M E 0.69 
D C 0.55 
M C 0.62 
R C 0.71 
D C 0.63 
Y C 0.55 
K C 0.47 
T C 0.58 
I C 0.58 
E C 0.54 
V C 0.72 
P C 0.89 
M C 0.56 
K H 0.68 
Y H 0.68 
V H 0.67 
E H 0.86 
E H 0.93 
E H 0.91 
A H 0.88 
K H 0.86 
G H 0.79 
R H 0.61 
L C 0.50 
A C 0.69 
P C 0.77 
G C 0.92 
A C 0.88 
E C 0.51 
V E 0.69 
E E 0.81 
V E 0.78 
W E 0.66 
Q E 0.61 
I E 0.43 
L C 0.51 
D C 0.69 
R C 0.52 
Y C 0.49 
K C 0.43 
I E 0.45 
I E 0.51 
R E 0.46 
V C 0.60 
K C 0.76 
END 
