REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0062AL215_1_9 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : ZHU-JUN 
REMARK  ---------------------------------------------------------- 
TARGET     T0062  
AUTHOR     4070-8855-4894  
METHOD     The target is compared with PDB25 database (U.Hobohm et al., 1992).  
METHOD     For each structure in PDB25, a model is built in the following way:  
METHOD     the sequence (query) is compared with NR database using transitive   
METHOD     BLAST (Neuwald et al. 1997). Similar sequences are collected and   
METHOD     purged at score 150.  Those sequences are aligned with query   
METHOD     sequence using Bayesian aligner (Zhu et al., 1998) and a   
METHOD     profile-like model is built (Lawrence et al. 1993; Gribskov et al.,  
METHOD     1987; unpublished result by Jun Zhu, Roland Luthy and Charlse E.   
METHOD     Lawrence).  Then, the target file is compared with the models   
METHOD     derived from PDB25.  
MODEL     1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1ndh 
ATOM      1  N   ILE   197      19.727   8.923  14.686  1.00  0.00              
ATOM      2  CA  ILE   197      19.741   8.805  13.237  1.00  0.00              
ATOM      3  C   ILE   197      18.555   9.589  12.613  1.00  0.00              
ATOM      4  O   ILE   197      17.390   9.293  12.929  1.00  0.00              
ATOM      5  N   TYR   198      18.941  10.598  11.803  1.00  0.00              
ATOM      6  CA  TYR   198      17.928  11.437  11.085  1.00  0.00              
ATOM      7  C   TYR   198      17.963  11.127   9.574  1.00  0.00              
ATOM      8  O   TYR   198      19.066  10.990   8.969  1.00  0.00              
ATOM      9  N   ILE   199      16.818  11.054   8.937  1.00  0.00              
ATOM     10  CA  ILE   199      16.349  10.745   7.587  1.00  0.00              
ATOM     11  C   ILE   199      17.080   9.466   7.100  1.00  0.00              
ATOM     12  O   ILE   199      17.976   9.405   6.225  1.00  0.00              
ATOM     13  N   ALA   200      16.772   8.351   7.713  1.00  0.00              
ATOM     14  CA  ALA   200      17.273   6.957   7.501  1.00  0.00              
ATOM     15  C   ALA   200      17.825   6.492   6.168  1.00  0.00              
ATOM     16  O   ALA   200      18.847   5.844   5.891  1.00  0.00              
ATOM     17  N   GLY   201      17.077   6.710   5.115  1.00  0.00              
ATOM     18  CA  GLY   201      17.492   6.420   3.734  1.00  0.00              
ATOM     19  C   GLY   201      17.321   7.911   3.243  1.00  0.00              
ATOM     20  O   GLY   201      17.033   8.826   4.052  1.00  0.00              
ATOM     21  N   ARG   202      17.559   8.070   1.955  1.00  0.00              
ATOM     22  CA  ARG   202      17.411   9.380   1.347  1.00  0.00              
ATOM     23  C   ARG   202      15.922   9.685   1.560  1.00  0.00              
ATOM     24  O   ARG   202      15.029   8.833   1.248  1.00  0.00              
ATOM     25  N   PHE   203      15.650  10.918   1.984  1.00  0.00              
ATOM     26  CA  PHE   203      14.300  11.421   2.216  1.00  0.00              
ATOM     27  C   PHE   203      13.262  10.920   1.219  1.00  0.00              
ATOM     28  O   PHE   203      12.130  10.632   1.683  1.00  0.00              
ATOM     29  N   GLU   204      13.592  10.745  -0.041  1.00  0.00              
ATOM     30  CA  GLU   204      12.655  10.233  -1.043  1.00  0.00              
ATOM     31  C   GLU   204      11.704   9.210  -0.425  1.00  0.00              
ATOM     32  O   GLU   204      12.170   8.347   0.324  1.00  0.00              
ATOM     33  N   MET   205      10.450   9.400  -0.735  1.00  0.00              
ATOM     34  CA  MET   205       9.212   8.760  -0.408  1.00  0.00              
ATOM     35  C   MET   205       9.308   7.794   0.759  1.00  0.00              
ATOM     36  O   MET   205       8.926   6.631   0.678  1.00  0.00              
ATOM     37  N   ALA   206       9.818   8.309   1.863  1.00  0.00              
ATOM     38  CA  ALA   206       9.971   7.527   3.121  1.00  0.00              
ATOM     39  C   ALA   206       9.653   6.042   3.020  1.00  0.00              
ATOM     40  O   ALA   206       8.908   5.510   3.913  1.00  0.00              
ATOM     41  N   LYS   207      10.181   5.274   2.048  1.00  0.00              
ATOM     42  CA  LYS   207       9.768   3.837   2.067  1.00  0.00              
ATOM     43  C   LYS   207      10.759   2.865   2.672  1.00  0.00              
ATOM     44  O   LYS   207      11.968   3.164   2.804  1.00  0.00              
ATOM     45  N   ILE   208      10.221   1.700   3.071  1.00  0.00              
ATOM     46  CA  ILE   208      10.974   0.615   3.708  1.00  0.00              
ATOM     47  C   ILE   208      10.652   0.435   5.217  1.00  0.00              
ATOM     48  O   ILE   208      11.003  -0.601   5.852  1.00  0.00              
ATOM     49  N   ALA   209       9.990   1.427   5.761  1.00  0.00              
ATOM     50  CA  ALA   209       9.657   1.674   7.167  1.00  0.00              
ATOM     51  C   ALA   209      10.899   2.542   7.526  1.00  0.00              
ATOM     52  O   ALA   209      11.160   3.512   6.737  1.00  0.00              
ATOM     53  N   ARG   210      11.698   2.226   8.539  1.00  0.00              
ATOM     54  CA  ARG   210      12.925   3.060   8.734  1.00  0.00              
ATOM     55  C   ARG   210      13.852   2.370   7.726  1.00  0.00              
ATOM     56  O   ARG   210      13.248   1.841   6.755  1.00  0.00              
ATOM     57  N   ASP   211      15.151   2.329   7.913  1.00  0.00              
ATOM     58  CA  ASP   211      15.990   1.615   6.983  1.00  0.00              
ATOM     59  C   ASP   211      16.224   0.183   7.563  1.00  0.00              
ATOM     60  O   ASP   211      16.533   0.014   8.752  1.00  0.00              
ATOM     61  N   LEU   212      16.118  -0.742   6.637  1.00  0.00              
ATOM     62  CA  LEU   212      16.429  -2.166   6.843  1.00  0.00              
ATOM     63  C   LEU   212      17.954  -2.238   7.115  1.00  0.00              
ATOM     64  O   LEU   212      18.409  -3.061   7.933  1.00  0.00              
ATOM     65  N   PHE   213      18.695  -1.313   6.510  1.00  0.00              
ATOM     66  CA  PHE   213      20.158  -1.191   6.716  1.00  0.00              
ATOM     67  C   PHE   213      20.540  -0.701   8.112  1.00  0.00              
ATOM     68  O   PHE   213      21.492  -1.156   8.777  1.00  0.00              
ATOM     69  N   CYS   214      19.804   0.231   8.662  1.00  0.00              
ATOM     70  CA  CYS   214      20.041   0.737  10.040  1.00  0.00              
ATOM     71  C   CYS   214      19.784  -0.376  11.079  1.00  0.00              
ATOM     72  O   CYS   214      20.483  -0.499  12.110  1.00  0.00              
ATOM     73  N   SER   215      18.775  -1.207  10.877  1.00  0.00              
ATOM     74  CA  SER   215      18.423  -2.295  11.814  1.00  0.00              
ATOM     75  C   SER   215      19.577  -3.310  11.871  1.00  0.00              
ATOM     76  O   SER   215      20.055  -3.695  12.940  1.00  0.00              
ATOM     77  N   GLU   216      20.000  -3.724  10.692  1.00  0.00              
ATOM     78  CA  GLU   216      21.084  -4.638  10.384  1.00  0.00              
ATOM     79  C   GLU   216      22.327  -4.364  11.235  1.00  0.00              
ATOM     80  O   GLU   216      22.958  -5.279  11.787  1.00  0.00              
ATOM     81  N   ARG   217      22.724  -3.095  11.351  1.00  0.00              
ATOM     82  CA  ARG   217      23.906  -2.738  12.134  1.00  0.00              
ATOM     83  C   ARG   217      23.489  -2.660  13.606  1.00  0.00              
ATOM     84  O   ARG   217      24.432  -2.485  14.391  1.00  0.00              
ATOM     85  N   ASN   218      22.202  -2.787  13.857  1.00  0.00              
ATOM     86  CA  ASN   218      21.687  -2.743  15.207  1.00  0.00              
ATOM     87  C   ASN   218      21.182  -1.438  15.764  1.00  0.00              
ATOM     88  O   ASN   218      20.922  -1.411  16.982  1.00  0.00              
ATOM     89  N   ALA   219      20.997  -0.382  14.997  1.00  0.00              
ATOM     90  CA  ALA   219      20.496   0.910  15.514  1.00  0.00              
ATOM     91  C   ALA   219      19.054   0.650  15.921  1.00  0.00              
ATOM     92  O   ALA   219      18.369   0.066  15.078  1.00  0.00              
ATOM     93  N   ARG   220      18.695   1.031  17.106  1.00  0.00              
ATOM     94  CA  ARG   220      17.345   0.849  17.643  1.00  0.00              
ATOM     95  C   ARG   220      16.370   1.672  16.817  1.00  0.00              
ATOM     96  O   ARG   220      16.729   2.787  16.434  1.00  0.00              
ATOM     97  N   GLU   221      15.179   1.108  16.589  1.00  0.00              
ATOM     98  CA  GLU   221      14.261   1.924  15.761  1.00  0.00              
ATOM     99  C   GLU   221      13.815   3.151  16.537  1.00  0.00              
ATOM    100  O   GLU   221      13.358   4.079  15.838  1.00  0.00              
ATOM    101  N   ASP   222      13.944   3.210  17.839  1.00  0.00              
ATOM    102  CA  ASP   222      13.504   4.402  18.588  1.00  0.00              
ATOM    103  C   ASP   222      14.411   5.599  18.385  1.00  0.00              
ATOM    104  O   ASP   222      14.069   6.775  18.696  1.00  0.00              
ATOM    105  N   ARG   223      15.642   5.320  17.917  1.00  0.00              
ATOM    106  CA  ARG   223      16.650   6.369  17.685  1.00  0.00              
ATOM    107  C   ARG   223      16.735   6.823  16.250  1.00  0.00              
ATOM    108  O   ARG   223      17.623   7.595  15.910  1.00  0.00              
ATOM    109  N   LEU   224      15.845   6.381  15.386  1.00  0.00              
ATOM    110  CA  LEU   224      15.785   6.715  13.967  1.00  0.00              
ATOM    111  C   LEU   224      14.555   7.603  13.703  1.00  0.00              
ATOM    112  O   LEU   224      13.419   7.226  13.972  1.00  0.00              
ATOM    113  N   PHE   225      14.874   8.805  13.244  1.00  0.00              
ATOM    114  CA  PHE   225      13.881   9.833  12.939  1.00  0.00              
ATOM    115  C   PHE   225      13.947  10.264  11.466  1.00  0.00              
ATOM    116  O   PHE   225      14.997  10.564  10.902  1.00  0.00              
ATOM    117  N   GLY   226      12.730  10.295  10.900  1.00  0.00              
ATOM    118  CA  GLY   226      12.505  10.700   9.499  1.00  0.00              
ATOM    119  C   GLY   226      11.815  12.042   9.567  1.00  0.00              
ATOM    120  O   GLY   226      10.822  12.171  10.316  1.00  0.00              
ATOM    121  N   ASP   227      12.292  13.060   8.910  1.00  0.00              
ATOM    122  CA  ASP   227      11.730  14.413   8.870  1.00  0.00              
ATOM    123  C   ASP   227      10.554  14.416   7.857  1.00  0.00              
ATOM    124  O   ASP   227       9.647  15.230   8.092  1.00  0.00              
END
