REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0062AL215_1_3 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : ZHU-JUN 
REMARK  ---------------------------------------------------------- 
TARGET     T0062  
AUTHOR     4070-8855-4894  
METHOD     The target is compared with PDB25 database (U.Hobohm et al., 1992).  
METHOD     For each structure in PDB25, a model is built in the following way:  
METHOD     the sequence (query) is compared with NR database using transitive   
METHOD     BLAST (Neuwald et al. 1997). Similar sequences are collected and   
METHOD     purged at score 150.  Those sequences are aligned with query   
METHOD     sequence using Bayesian aligner (Zhu et al., 1998) and a   
METHOD     profile-like model is built (Lawrence et al. 1993; Gribskov et al.,  
METHOD     1987; unpublished result by Jun Zhu, Roland Luthy and Charlse E.   
METHOD     Lawrence).  Then, the target file is compared with the models   
METHOD     derived from PDB25.  
MODEL     1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1ndh 
ATOM      1  N   ASP    41      -6.422  26.150  -9.648  1.00  0.00              
ATOM      2  CA  ASP    41      -7.645  26.124  -8.877  1.00  0.00              
ATOM      3  C   ASP    41      -7.877  25.232  -7.697  1.00  0.00              
ATOM      4  O   ASP    41      -8.965  25.051  -7.102  1.00  0.00              
ATOM      5  N   GLU    42      -6.815  24.598  -7.240  1.00  0.00              
ATOM      6  CA  GLU    42      -6.813  23.688  -6.088  1.00  0.00              
ATOM      7  C   GLU    42      -5.728  24.164  -5.100  1.00  0.00              
ATOM      8  O   GLU    42      -4.758  24.810  -5.554  1.00  0.00              
ATOM      9  N   ARG    43      -5.980  23.845  -3.844  1.00  0.00              
ATOM     10  CA  ARG    43      -5.129  24.220  -2.753  1.00  0.00              
ATOM     11  C   ARG    43      -3.957  23.228  -2.706  1.00  0.00              
ATOM     12  O   ARG    43      -4.330  22.043  -2.653  1.00  0.00              
ATOM     13  N   ASP    44      -2.763  23.838  -2.729  1.00  0.00              
ATOM     14  CA  ASP    44      -1.641  22.841  -2.593  1.00  0.00              
ATOM     15  C   ASP    44      -0.829  23.341  -1.399  1.00  0.00              
ATOM     16  O   ASP    44      -0.728  24.602  -1.248  1.00  0.00              
ATOM     17  N   LYS    45      -0.312  22.356  -0.664  1.00  0.00              
ATOM     18  CA  LYS    45       0.525  22.639   0.521  1.00  0.00              
ATOM     19  C   LYS    45       1.789  21.794   0.583  1.00  0.00              
ATOM     20  O   LYS    45       1.671  20.590   0.454  1.00  0.00              
ATOM     21  N   ARG    46       2.936  22.407   0.873  1.00  0.00              
ATOM     22  CA  ARG    46       4.212  21.582   0.933  1.00  0.00              
ATOM     23  C   ARG    46       5.134  22.152   1.999  1.00  0.00              
ATOM     24  O   ARG    46       5.065  23.393   2.183  1.00  0.00              
ATOM     25  N   PRO    47       5.955  21.334   2.631  1.00  0.00              
ATOM     26  CA  PRO    47       6.869  21.772   3.687  1.00  0.00              
ATOM     27  C   PRO    47       8.210  22.165   3.138  1.00  0.00              
ATOM     28  O   PRO    47       8.711  21.617   2.138  1.00  0.00              
ATOM     29  N   PHE    48       8.860  23.136   3.739  1.00  0.00              
ATOM     30  CA  PHE    48      10.157  23.675   3.395  1.00  0.00              
ATOM     31  C   PHE    48      10.912  24.134   4.670  1.00  0.00              
ATOM     32  O   PHE    48      10.289  24.845   5.508  1.00  0.00              
ATOM     33  N   SER    49      12.175  23.747   4.613  1.00  0.00              
ATOM     34  CA  SER    49      13.177  24.122   5.631  1.00  0.00              
ATOM     35  C   SER    49      14.052  25.190   4.973  1.00  0.00              
ATOM     36  O   SER    49      14.806  24.886   4.035  1.00  0.00              
ATOM     37  N   MET    50      13.887  26.415   5.481  1.00  0.00              
ATOM     38  CA  MET    50      14.646  27.538   4.978  1.00  0.00              
ATOM     39  C   MET    50      16.148  27.289   5.238  1.00  0.00              
ATOM     40  O   MET    50      16.526  26.463   6.049  1.00  0.00              
ATOM     41  N   ALA    51      16.894  28.084   4.518  1.00  0.00              
ATOM     42  CA  ALA    51      18.353  28.082   4.530  1.00  0.00              
ATOM     43  C   ALA    51      18.863  29.278   5.303  1.00  0.00              
ATOM     44  O   ALA    51      20.061  29.280   5.696  1.00  0.00              
ATOM     45  N   SER    52      17.982  30.213   5.528  1.00  0.00              
ATOM     46  CA  SER    52      18.415  31.441   6.301  1.00  0.00              
ATOM     47  C   SER    52      18.260  30.996   7.748  1.00  0.00              
ATOM     48  O   SER    52      17.826  29.824   7.826  1.00  0.00              
ATOM     49  N   THR    53      18.562  31.815   8.742  1.00  0.00              
ATOM     50  CA  THR    53      18.389  31.361  10.140  1.00  0.00              
ATOM     51  C   THR    53      17.714  32.489  10.930  1.00  0.00              
ATOM     52  O   THR    53      17.539  33.569  10.321  1.00  0.00              
ATOM     53  N   PRO    54      17.517  32.216  12.220  1.00  0.00              
ATOM     54  CA  PRO    54      16.958  33.210  13.126  1.00  0.00              
ATOM     55  C   PRO    54      18.058  34.274  13.389  1.00  0.00              
ATOM     56  O   PRO    54      17.812  35.318  14.063  1.00  0.00              
ATOM     57  N   ASP    55      19.242  34.077  12.801  1.00  0.00              
ATOM     58  CA  ASP    55      20.334  35.088  12.938  1.00  0.00              
ATOM     59  C   ASP    55      20.085  36.126  11.842  1.00  0.00              
ATOM     60  O   ASP    55      20.418  37.300  11.936  1.00  0.00              
ATOM     61  N   GLU    56      19.472  35.636  10.769  1.00  0.00              
ATOM     62  CA  GLU    56      19.211  36.571   9.624  1.00  0.00              
ATOM     63  C   GLU    56      18.243  37.602  10.117  1.00  0.00              
ATOM     64  O   GLU    56      17.661  37.314  11.199  1.00  0.00              
ATOM     65  N   LYS    57      18.007  38.741   9.543  1.00  0.00              
ATOM     66  CA  LYS    57      17.013  39.677  10.102  1.00  0.00              
ATOM     67  C   LYS    57      16.397  40.355   8.872  1.00  0.00              
ATOM     68  O   LYS    57      17.108  40.776   7.949  1.00  0.00              
ATOM     69  N   GLY    58      15.071  40.376   8.930  1.00  0.00              
ATOM     70  CA  GLY    58      14.219  40.973   7.920  1.00  0.00              
ATOM     71  C   GLY    58      13.973  40.121   6.697  1.00  0.00              
ATOM     72  O   GLY    58      13.335  40.612   5.727  1.00  0.00              
ATOM     73  N   PHE    59      14.505  38.905   6.714  1.00  0.00              
ATOM     74  CA  PHE    59      14.241  38.106   5.505  1.00  0.00              
ATOM     75  C   PHE    59      14.315  36.622   5.931  1.00  0.00              
ATOM     76  O   PHE    59      13.874  35.888   5.034  1.00  0.00              
ATOM     77  N   ILE    60      14.825  36.368   7.070  1.00  0.00              
ATOM     78  CA  ILE    60      15.147  35.250   7.931  1.00  0.00              
ATOM     79  C   ILE    60      14.722  33.869   7.437  1.00  0.00              
ATOM     80  O   ILE    60      14.861  32.792   8.056  1.00  0.00              
ATOM     81  N   GLU    61      14.301  34.004   6.186  1.00  0.00              
ATOM     82  CA  GLU    61      13.765  33.299   5.099  1.00  0.00              
ATOM     83  C   GLU    61      14.141  33.609   3.645  1.00  0.00              
ATOM     84  O   GLU    61      13.682  34.372   2.758  1.00  0.00              
ATOM     85  N   LEU    62      15.042  32.650   3.406  1.00  0.00              
ATOM     86  CA  LEU    62      15.663  32.269   2.157  1.00  0.00              
ATOM     87  C   LEU    62      15.309  30.756   2.051  1.00  0.00              
ATOM     88  O   LEU    62      15.515  30.066   3.031  1.00  0.00              
ATOM     89  N   HIS    63      14.770  30.381   0.938  1.00  0.00              
ATOM     90  CA  HIS    63      14.467  28.954   0.701  1.00  0.00              
ATOM     91  C   HIS    63      15.225  28.616  -0.607  1.00  0.00              
ATOM     92  O   HIS    63      15.310  29.426  -1.517  1.00  0.00              
ATOM     93  N   ILE    64      15.742  27.417  -0.605  1.00  0.00              
ATOM     94  CA  ILE    64      16.482  26.851  -1.740  1.00  0.00              
ATOM     95  C   ILE    64      15.535  25.796  -2.328  1.00  0.00              
ATOM     96  O   ILE    64      15.105  24.913  -1.598  1.00  0.00              
ATOM     97  N   GLY    65      15.287  25.972  -3.612  1.00  0.00              
ATOM     98  CA  GLY    65      14.326  25.099  -4.321  1.00  0.00              
ATOM     99  C   GLY    65      14.766  24.334  -5.556  1.00  0.00              
ATOM    100  O   GLY    65      15.282  24.957  -6.497  1.00  0.00              
ATOM    101  N   ALA    66      14.500  23.027  -5.534  1.00  0.00              
ATOM    102  CA  ALA    66      14.815  22.200  -6.733  1.00  0.00              
ATOM    103  C   ALA    66      13.506  22.326  -7.535  1.00  0.00              
ATOM    104  O   ALA    66      12.457  22.075  -6.929  1.00  0.00              
ATOM    105  N   SER    67      13.557  22.715  -8.780  1.00  0.00              
ATOM    106  CA  SER    67      12.294  22.874  -9.532  1.00  0.00              
ATOM    107  C   SER    67      12.071  21.656 -10.406  1.00  0.00              
ATOM    108  O   SER    67      12.990  21.284 -11.127  1.00  0.00              
ATOM    109  N   GLU    68      10.845  21.137 -10.365  1.00  0.00              
ATOM    110  CA  GLU    68      10.528  19.955 -11.196  1.00  0.00              
ATOM    111  C   GLU    68       9.690  20.444 -12.377  1.00  0.00              
ATOM    112  O   GLU    68       8.483  20.617 -12.337  1.00  0.00              
ATOM    113  N   ILE    69      10.426  20.703 -13.432  1.00  0.00              
ATOM    114  CA  ILE    69       9.926  21.225 -14.678  1.00  0.00              
ATOM    115  C   ILE    69       8.955  20.313 -15.383  1.00  0.00              
ATOM    116  O   ILE    69       9.150  19.074 -15.351  1.00  0.00              
ATOM    117  N   ASN    70       7.935  20.916 -16.008  1.00  0.00              
ATOM    118  CA  ASN    70       7.084  19.908 -16.708  1.00  0.00              
ATOM    119  C   ASN    70       7.824  19.641 -18.028  1.00  0.00              
ATOM    120  O   ASN    70       8.912  20.178 -18.238  1.00  0.00              
ATOM    121  N   LEU    71       7.248  18.781 -18.806  1.00  0.00              
ATOM    122  CA  LEU    71       7.680  18.396 -20.147  1.00  0.00              
ATOM    123  C   LEU    71       9.098  17.927 -20.259  1.00  0.00              
ATOM    124  O   LEU    71       9.778  18.085 -21.282  1.00  0.00              
ATOM    125  N   TYR    72       9.653  17.325 -19.235  1.00  0.00              
ATOM    126  CA  TYR    72      11.016  16.768 -19.064  1.00  0.00              
ATOM    127  C   TYR    72      10.997  15.259 -19.006  1.00  0.00              
ATOM    128  O   TYR    72      10.033  14.616 -19.445  1.00  0.00              
ATOM    129  N   ALA    73      12.012  14.609 -18.437  1.00  0.00              
ATOM    130  CA  ALA    73      12.105  13.181 -18.535  1.00  0.00              
ATOM    131  C   ALA    73      10.981  12.614 -17.845  1.00  0.00              
ATOM    132  O   ALA    73      10.449  11.550 -18.315  1.00  0.00              
ATOM    133  N   LYS    74      10.740  13.388 -16.849  1.00  0.00              
ATOM    134  CA  LYS    74       9.888  13.031 -15.808  1.00  0.00              
ATOM    135  C   LYS    74       8.557  13.800 -15.715  1.00  0.00              
ATOM    136  O   LYS    74       8.308  15.011 -15.606  1.00  0.00              
ATOM    137  N   ALA    75       7.611  12.891 -15.781  1.00  0.00              
ATOM    138  CA  ALA    75       6.179  12.873 -15.830  1.00  0.00              
ATOM    139  C   ALA    75       5.665  14.287 -16.045  1.00  0.00              
ATOM    140  O   ALA    75       6.071  15.275 -15.449  1.00  0.00              
ATOM    141  N   VAL    76       4.858  14.265 -17.103  1.00  0.00              
ATOM    142  CA  VAL    76       4.205  15.373 -17.737  1.00  0.00              
ATOM    143  C   VAL    76       4.154  16.749 -17.174  1.00  0.00              
ATOM    144  O   VAL    76       4.806  17.657 -17.725  1.00  0.00              
ATOM    145  N   MET    77       3.327  16.955 -16.162  1.00  0.00              
ATOM    146  CA  MET    77       3.095  18.218 -15.466  1.00  0.00              
ATOM    147  C   MET    77       4.157  18.729 -14.501  1.00  0.00              
ATOM    148  O   MET    77       3.845  19.767 -13.872  1.00  0.00              
END
