REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0061AL201_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : TATSUYA-AKUTSU 
REMARK  ---------------------------------------------------------- 
TARGET T0061  
AUTHOR 7648-2940-6918  
REMARK 1st candidate   
REMARK   
METHOD We align a target sequence with structurally aligned sequences  
METHOD (i.e., multiple structure alignment), where a multiple structure  
METHOD alignment is computed from results of pairwise structure alignments  
METHOD for similar structures.   
METHOD Pairwise structure alignments are computed using a computer  
METHOD program STRALIGN [1] developed by the group-leader and they are  
METHOD combined into a multiple structure alignment using a method like  
METHOD center-star alignment.  
METHOD A simple dynamic programming procedure (Smith-Waterman like procedure)  
METHOD is used for computing an alignment between a target sequence and  
METHOD the aligned sequences.  
METHOD Finally, an alignment between a target and one of the aligned  
METHOD sequences (i.e., template sequence) is extracted and refined.  
METHOD Human knowledge is also used to find template structures and  
METHOD to refine alignments.  
METHOD  
METHOD [1] T. Akutsu: Protein structure alignment using dynamic programming  
METHOD and iterative alignment, IEICE Transactions on Information and Systems,  
METHOD vol. E79-D, pp. 1629--1636, 1996.  
METHOD  
METHOD Program code of STRALIGN is available via  
METHOD http://www.hgc.ims.u-tokyo.ac.jp/service/tooldoc/stralign/intro.html  
MODEL  1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1avc 
ATOM      1  N   ALA     1     -15.274   9.941  25.066  1.00  0.00              
ATOM      2  CA  ALA     1     -16.312   8.945  25.296  1.00  0.00              
ATOM      3  C   ALA     1     -15.656   7.580  25.446  1.00  0.00              
ATOM      4  O   ALA     1     -15.988   6.813  26.349  1.00  0.00              
ATOM      5  N   ASP     2     -14.716   7.289  24.552  1.00  0.00              
ATOM      6  CA  ASP     2     -13.995   6.022  24.568  1.00  0.00              
ATOM      7  C   ASP     2     -13.315   5.802  25.914  1.00  0.00              
ATOM      8  O   ASP     2     -13.521   4.778  26.565  1.00  0.00              
ATOM      9  N   ALA     3     -12.505   6.773  26.324  1.00  0.00              
ATOM     10  CA  ALA     3     -11.785   6.695  27.589  1.00  0.00              
ATOM     11  C   ALA     3     -12.737   6.488  28.761  1.00  0.00              
ATOM     12  O   ALA     3     -12.463   5.695  29.661  1.00  0.00              
ATOM     13  N   GLN     4     -13.857   7.202  28.742  1.00  0.00              
ATOM     14  CA  GLN     4     -14.851   7.103  29.804  1.00  0.00              
ATOM     15  C   GLN     4     -15.443   5.699  29.898  1.00  0.00              
ATOM     16  O   GLN     4     -15.635   5.169  30.994  1.00  0.00              
ATOM     17  N   LYS     5     -15.734   5.101  28.747  1.00  0.00              
ATOM     18  CA  LYS     5     -16.303   3.759  28.704  1.00  0.00              
ATOM     19  C   LYS     5     -15.310   2.725  29.222  1.00  0.00              
ATOM     20  O   LYS     5     -15.679   1.809  29.957  1.00  0.00              
ATOM     21  N   ALA     6     -14.048   2.881  28.835  1.00  0.00              
ATOM     22  CA  ALA     6     -12.994   1.963  29.246  1.00  0.00              
ATOM     23  C   ALA     6     -12.816   1.931  30.760  1.00  0.00              
ATOM     24  O   ALA     6     -12.374   0.926  31.315  1.00  0.00              
ATOM     25  N   ALA     7     -13.172   3.027  31.424  1.00  0.00              
ATOM     26  CA  ALA     7     -13.041   3.129  32.874  1.00  0.00              
ATOM     27  C   ALA     7     -14.358   2.947  33.624  1.00  0.00              
ATOM     28  O   ALA     7     -14.381   2.976  34.856  1.00  0.00              
ATOM     29  N   ASP     8     -15.451   2.766  32.890  1.00  0.00              
ATOM     30  CA  ASP     8     -16.757   2.586  33.515  1.00  0.00              
ATOM     31  C   ASP     8     -17.075   1.107  33.715  1.00  0.00              
ATOM     32  O   ASP     8     -16.708   0.268  32.892  1.00  0.00              
ATOM     33  N   ASN     9     -17.754   0.807  34.822  1.00  0.00              
ATOM     34  CA  ASN     9     -18.124  -0.562  35.146  1.00  0.00              
ATOM     35  C   ASN     9     -17.026  -1.294  35.895  1.00  0.00              
ATOM     36  O   ASN     9     -16.129  -0.662  36.447  1.00  0.00              
ATOM     37  N   LYS    10     -17.081  -2.621  35.922  1.00  0.00              
ATOM     38  CA  LYS    10     -16.064  -3.399  36.629  1.00  0.00              
ATOM     39  C   LYS    10     -14.863  -3.668  35.727  1.00  0.00              
ATOM     40  O   LYS    10     -15.031  -4.070  34.584  1.00  0.00              
ATOM     41  N   LYS    11     -13.661  -3.433  36.248  1.00  0.00              
ATOM     42  CA  LYS    11     -12.456  -3.662  35.469  1.00  0.00              
ATOM     43  C   LYS    11     -12.100  -2.502  34.560  1.00  0.00              
ATOM     44  O   LYS    11     -12.868  -1.566  34.412  1.00  0.00              
ATOM     45  N   PRO    12     -10.928  -2.561  33.941  1.00  0.00              
ATOM     46  CA  PRO    12     -10.494  -1.493  33.046  1.00  0.00              
ATOM     47  C   PRO    12     -10.153  -2.042  31.669  1.00  0.00              
ATOM     48  O   PRO    12      -9.558  -3.109  31.554  1.00  0.00              
ATOM     49  N   VAL    13     -10.534  -1.312  30.626  1.00  0.00              
ATOM     50  CA  VAL    13     -10.235  -1.733  29.263  1.00  0.00              
ATOM     51  C   VAL    13      -8.832  -1.243  28.936  1.00  0.00              
ATOM     52  O   VAL    13      -8.636  -0.441  28.023  1.00  0.00              
ATOM     53  N   ASN    14      -7.863  -1.728  29.706  1.00  0.00              
ATOM     54  CA  ASN    14      -6.461  -1.362  29.541  1.00  0.00              
ATOM     55  C   ASN    14      -6.074  -1.146  28.080  1.00  0.00              
ATOM     56  O   ASN    14      -5.351  -0.205  27.754  1.00  0.00              
ATOM     57  N   SER    15      -6.565  -2.018  27.206  1.00  0.00              
ATOM     58  CA  SER    15      -6.269  -1.933  25.780  1.00  0.00              
ATOM     59  C   SER    15      -6.719  -0.613  25.161  1.00  0.00              
ATOM     60  O   SER    15      -5.982   0.004  24.391  1.00  0.00              
ATOM     61  N   TRP    16      -7.931  -0.183  25.499  1.00  0.00              
ATOM     62  CA  TRP    16      -8.485   1.058  24.968  1.00  0.00              
ATOM     63  C   TRP    16      -7.693   2.284  25.410  1.00  0.00              
ATOM     64  O   TRP    16      -7.320   3.120  24.587  1.00  0.00              
ATOM     65  N   THR    17      -7.444   2.390  26.711  1.00  0.00              
ATOM     66  CA  THR    17      -6.703   3.520  27.259  1.00  0.00              
ATOM     67  C   THR    17      -5.323   3.660  26.623  1.00  0.00              
ATOM     68  O   THR    17      -4.926   4.753  26.216  1.00  0.00              
ATOM     69  N   CYS    18      -4.595   2.551  26.539  1.00  0.00              
ATOM     70  CA  CYS    18      -3.263   2.559  25.948  1.00  0.00              
ATOM     71  C   CYS    18      -3.331   3.069  24.514  1.00  0.00              
ATOM     72  O   CYS    18      -2.747   4.101  24.182  1.00  0.00              
ATOM     73  N   GLU    19      -4.051   2.336  23.671  1.00  0.00              
ATOM     74  CA  GLU    19      -4.213   2.690  22.266  1.00  0.00              
ATOM     75  C   GLU    19      -4.379   4.194  22.074  1.00  0.00              
ATOM     76  O   GLU    19      -3.693   4.802  21.255  1.00  0.00              
ATOM     77  N   PHE    21      -5.286   4.788  22.841  1.00  0.00              
ATOM     78  CA  PHE    21      -5.558   6.218  22.749  1.00  0.00              
ATOM     79  C   PHE    21      -4.465   7.097  23.357  1.00  0.00              
ATOM     80  O   PHE    21      -3.823   7.874  22.654  1.00  0.00              
ATOM     81  N   LEU    22      -4.263   6.970  24.664  1.00  0.00              
ATOM     82  CA  LEU    22      -3.274   7.771  25.377  1.00  0.00              
ATOM     83  C   LEU    22      -1.833   7.623  24.891  1.00  0.00              
ATOM     84  O   LEU    22      -1.000   8.495  25.142  1.00  0.00              
ATOM     85  N   ALA    23      -1.536   6.529  24.200  1.00  0.00              
ATOM     86  CA  ALA    23      -0.186   6.298  23.699  1.00  0.00              
ATOM     87  C   ALA    23      -0.097   6.552  22.200  1.00  0.00              
ATOM     88  O   ALA    23       0.907   6.228  21.566  1.00  0.00              
ATOM     89  N   VAL    24      -1.149   7.137  21.638  1.00  0.00              
ATOM     90  CA  VAL    24      -1.189   7.425  20.209  1.00  0.00              
ATOM     91  C   VAL    24      -1.489   8.896  19.925  1.00  0.00              
ATOM     92  O   VAL    24      -0.964   9.472  18.972  1.00  0.00              
ATOM     93  N   ASP    25      -2.332   9.498  20.757  1.00  0.00              
ATOM     94  CA  ASP    25      -2.719  10.891  20.580  1.00  0.00              
ATOM     95  C   ASP    25      -1.573  11.869  20.807  1.00  0.00              
ATOM     96  O   ASP    25      -0.603  11.559  21.499  1.00  0.00              
ATOM     97  N   GLU    26      -1.697  13.053  20.214  1.00  0.00              
ATOM     98  CA  GLU    26      -0.684  14.095  20.330  1.00  0.00              
ATOM     99  C   GLU    26      -1.038  15.098  21.425  1.00  0.00              
ATOM    100  O   GLU    26      -2.121  15.038  22.007  1.00  0.00              
ATOM    101  N   SER    27      -0.119  16.020  21.698  1.00  0.00              
ATOM    102  CA  SER    27      -0.329  17.039  22.721  1.00  0.00              
ATOM    103  C   SER    27      -1.618  17.808  22.454  1.00  0.00              
ATOM    104  O   SER    27      -2.427  18.015  23.358  1.00  0.00              
ATOM    105  N   PHE    28      -1.798  18.229  21.206  1.00  0.00              
ATOM    106  CA  PHE    28      -2.985  18.976  20.810  1.00  0.00              
ATOM    107  C   PHE    28      -4.232  18.115  20.964  1.00  0.00              
ATOM    108  O   PHE    28      -5.258  18.574  21.465  1.00  0.00              
ATOM    109  N   GLN    29      -4.137  16.862  20.530  1.00  0.00              
ATOM    110  CA  GLN    29      -5.257  15.936  20.621  1.00  0.00              
ATOM    111  C   GLN    29      -5.598  15.639  22.078  1.00  0.00              
ATOM    112  O   GLN    29      -6.770  15.609  22.454  1.00  0.00              
ATOM    113  N   PRO    30      -4.571  15.427  22.895  1.00  0.00              
ATOM    114  CA  PRO    30      -4.770  15.139  24.311  1.00  0.00              
ATOM    115  C   PRO    30      -5.382  16.346  25.013  1.00  0.00              
ATOM    116  O   PRO    30      -6.217  16.198  25.905  1.00  0.00              
ATOM    117  N   THR    31      -4.962  17.540  24.608  1.00  0.00              
ATOM    118  CA  THR    31      -5.486  18.767  25.195  1.00  0.00              
ATOM    119  C   THR    31      -6.972  18.868  24.875  1.00  0.00              
ATOM    120  O   THR    31      -7.794  19.107  25.759  1.00  0.00              
ATOM    121  N   ALA    32      -7.306  18.679  23.602  1.00  0.00              
ATOM    122  CA  ALA    32      -8.691  18.736  23.156  1.00  0.00              
ATOM    123  C   ALA    32      -9.506  17.698  23.916  1.00  0.00              
ATOM    124  O   ALA    32     -10.646  17.951  24.304  1.00  0.00              
ATOM    125  N   VAL    33      -8.908  16.530  24.132  1.00  0.00              
ATOM    126  CA  VAL    33      -9.571  15.447  24.850  1.00  0.00              
ATOM    127  C   VAL    33      -9.809  15.839  26.305  1.00  0.00              
ATOM    128  O   VAL    33     -10.934  15.766  26.798  1.00  0.00              
ATOM    129  N   GLY    34      -8.744  16.253  26.985  1.00  0.00              
ATOM    130  CA  GLY    34      -8.833  16.657  28.384  1.00  0.00              
ATOM    131  C   GLY    34      -9.964  17.658  28.588  1.00  0.00              
ATOM    132  O   GLY    34     -10.652  17.631  29.608  1.00  0.00              
ATOM    133  N   PHE    35     -10.154  18.539  27.611  1.00  0.00              
ATOM    134  CA  PHE    35     -11.205  19.546  27.686  1.00  0.00              
ATOM    135  C   PHE    35     -12.572  18.911  27.463  1.00  0.00              
ATOM    136  O   PHE    35     -13.477  19.062  28.284  1.00  0.00              
ATOM    137  N   ALA    36     -12.713  18.202  26.348  1.00  0.00              
ATOM    138  CA  ALA    36     -13.968  17.543  26.008  1.00  0.00              
ATOM    139  C   ALA    36     -14.444  16.642  27.142  1.00  0.00              
ATOM    140  O   ALA    36     -15.644  16.416  27.305  1.00  0.00              
ATOM    141  N   GLU    37     -13.500  16.132  27.926  1.00  0.00              
ATOM    142  CA  GLU    37     -13.832  15.256  29.042  1.00  0.00              
ATOM    143  C   GLU    37     -14.491  16.032  30.173  1.00  0.00              
ATOM    144  O   GLU    37     -15.590  15.690  30.608  1.00  0.00              
ATOM    145  N   ALA    38     -13.816  17.075  30.647  1.00  0.00              
ATOM    146  CA  ALA    38     -14.342  17.903  31.727  1.00  0.00              
ATOM    147  C   ALA    38     -15.782  18.301  31.419  1.00  0.00              
ATOM    148  O   ALA    38     -16.638  18.309  32.302  1.00  0.00              
ATOM    149  N   LEU    39     -16.036  18.623  30.155  1.00  0.00              
ATOM    150  CA  LEU    39     -17.364  19.027  29.708  1.00  0.00              
ATOM    151  C   LEU    39     -18.381  17.899  29.844  1.00  0.00              
ATOM    152  O   LEU    39     -19.173  17.870  30.786  1.00  0.00              
ATOM    153  N   ASN    40     -18.352  16.976  28.885  1.00  0.00              
ATOM    154  CA  ASN    40     -19.263  15.836  28.860  1.00  0.00              
ATOM    155  C   ASN    40     -19.382  15.183  30.233  1.00  0.00              
ATOM    156  O   ASN    40     -20.483  14.968  30.739  1.00  0.00              
ATOM    157  N   ASN    41     -18.236  14.871  30.827  1.00  0.00              
ATOM    158  CA  ASN    41     -18.193  14.248  32.143  1.00  0.00              
ATOM    159  C   ASN    41     -17.450  15.176  33.091  1.00  0.00              
ATOM    160  O   ASN    41     -16.221  15.167  33.154  1.00  0.00              
ATOM    161  N   LYS    42     -18.216  15.983  33.815  1.00  0.00              
ATOM    162  CA  LYS    42     -17.675  16.946  34.762  1.00  0.00              
ATOM    163  C   LYS    42     -16.683  16.301  35.722  1.00  0.00              
ATOM    164  O   LYS    42     -17.031  15.902  36.833  1.00  0.00              
ATOM    165  N   ASP    43     -15.439  16.213  35.262  1.00  0.00              
ATOM    166  CA  ASP    43     -14.340  15.621  36.013  1.00  0.00              
ATOM    167  C   ASP    43     -13.116  15.649  35.102  1.00  0.00              
ATOM    168  O   ASP    43     -13.240  15.487  33.888  1.00  0.00              
ATOM    169  N   LYS    44     -11.946  15.864  35.686  1.00  0.00              
ATOM    170  CA  LYS    44     -10.708  15.911  34.894  1.00  0.00              
ATOM    171  C   LYS    44     -10.334  14.501  34.427  1.00  0.00              
ATOM    172  O   LYS    44     -10.608  13.520  35.116  1.00  0.00              
ATOM    173  N   PRO    45      -9.714  14.419  33.256  1.00  0.00              
ATOM    174  CA  PRO    45      -9.306  13.132  32.703  1.00  0.00              
ATOM    175  C   PRO    45      -8.366  12.401  33.655  1.00  0.00              
ATOM    176  O   PRO    45      -8.335  11.171  33.687  1.00  0.00              
ATOM    177  N   GLU    46      -7.599  13.165  34.427  1.00  0.00              
ATOM    178  CA  GLU    46      -6.664  12.586  35.382  1.00  0.00              
ATOM    179  C   GLU    46      -7.435  11.972  36.544  1.00  0.00              
ATOM    180  O   GLU    46      -7.234  10.807  36.889  1.00  0.00              
ATOM    181  N   ASP    47      -8.318  12.767  37.141  1.00  0.00              
ATOM    182  CA  ASP    47      -9.128  12.316  38.266  1.00  0.00              
ATOM    183  C   ASP    47      -9.831  11.008  37.928  1.00  0.00              
ATOM    184  O   ASP    47      -9.924  10.108  38.762  1.00  0.00              
ATOM    185  N   ALA    48     -10.325  10.911  36.698  1.00  0.00              
ATOM    186  CA  ALA    48     -11.009   9.707  36.249  1.00  0.00              
ATOM    187  C   ALA    48     -10.031   8.539  36.276  1.00  0.00              
ATOM    188  O   ALA    48     -10.340   7.467  36.796  1.00  0.00              
ATOM    189  N   VAL    49      -8.846   8.763  35.719  1.00  0.00              
ATOM    190  CA  VAL    49      -7.809   7.743  35.663  1.00  0.00              
ATOM    191  C   VAL    49      -7.431   7.232  37.049  1.00  0.00              
ATOM    192  O   VAL    49      -7.279   6.028  37.252  1.00  0.00              
ATOM    193  N   LEU    50      -7.284   8.147  38.001  1.00  0.00              
ATOM    194  CA  LEU    50      -6.921   7.776  39.364  1.00  0.00              
ATOM    195  C   LEU    50      -8.042   7.002  40.050  1.00  0.00              
ATOM    196  O   LEU    50      -7.822   6.351  41.070  1.00  0.00              
ATOM    197  N   ASP    51     -10.113   4.645  38.371  1.00  0.00              
ATOM    198  CA  ASP    51     -10.263   3.296  37.834  1.00  0.00              
ATOM    199  C   ASP    51      -8.971   2.490  37.736  1.00  0.00              
ATOM    200  O   ASP    51      -9.010   1.270  37.568  1.00  0.00              
ATOM    201  N   VAL    52      -7.829   3.161  37.828  1.00  0.00              
ATOM    202  CA  VAL    52      -6.551   2.467  37.746  1.00  0.00              
ATOM    203  C   VAL    52      -5.642   2.795  38.923  1.00  0.00              
ATOM    204  O   VAL    52      -5.966   3.641  39.758  1.00  0.00              
ATOM    205  N   GLN    53      -4.503   2.113  38.982  1.00  0.00              
ATOM    206  CA  GLN    53      -3.536   2.318  40.051  1.00  0.00              
ATOM    207  C   GLN    53      -2.193   1.709  39.667  1.00  0.00              
ATOM    208  O   GLN    53      -2.047   1.144  38.583  1.00  0.00              
ATOM    209  N   GLY    54      -1.215   1.828  40.559  1.00  0.00              
ATOM    210  CA  GLY    54       0.102   1.280  40.291  1.00  0.00              
ATOM    211  C   GLY    54       0.857   2.060  39.235  1.00  0.00              
ATOM    212  O   GLY    54       0.576   3.235  38.997  1.00  0.00              
END
