REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0060AL215_1_2 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : ZHU-JUN 
REMARK  ---------------------------------------------------------- 
TARGET     T0060  
AUTHOR     4070-8855-4894  
METHOD     The target is compared with PDB25 database (U.Hobohm et al., 1992).  
METHOD     For each structure in PDB25, a model is built in the following way:  
METHOD     the sequence (query) is compared with NR database using transitive   
METHOD     BLAST (Neuwald et al. 1997). Similar sequences are collected and   
METHOD     purged at score 150.  Those sequences are aligned with query   
METHOD     sequence using Bayesian aligner (Zhu et al., 1998) and a   
METHOD     profile-like model is built (Lawrence et al. 1993; Gribskov et al.,  
METHOD     1987; unpublished result by Jun Zhu, Roland Luthy and Charlse E.   
METHOD     Lawrence).  Then, the target file is compared with the models   
METHOD     derived from PDB25.  
MODEL     1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1fim 
ATOM      1  N   ASP    72      19.209   1.454   6.973  1.00  0.00              
ATOM      2  CA  ASP    72      20.055   1.409   8.164  1.00  0.00              
ATOM      3  C   ASP    72      19.685   2.543   9.159  1.00  0.00              
ATOM      4  O   ASP    72      19.540   2.310  10.362  1.00  0.00              
ATOM      5  N   ASN    73      19.530   3.761   8.640  1.00  0.00              
ATOM      6  CA  ASN    73      19.146   4.917   9.437  1.00  0.00              
ATOM      7  C   ASN    73      17.897   4.557  10.227  1.00  0.00              
ATOM      8  O   ASN    73      17.879   4.686  11.454  1.00  0.00              
ATOM      9  N   ARG    74      16.860   4.098   9.521  1.00  0.00              
ATOM     10  CA  ARG    74      15.617   3.693  10.158  1.00  0.00              
ATOM     11  C   ARG    74      15.892   2.643  11.246  1.00  0.00              
ATOM     12  O   ARG    74      15.508   2.820  12.406  1.00  0.00              
ATOM     13  N   SER    75      16.582   1.568  10.880  1.00  0.00              
ATOM     14  CA  SER    75      16.875   0.492  11.823  1.00  0.00              
ATOM     15  C   SER    75      17.732   0.934  13.018  1.00  0.00              
ATOM     16  O   SER    75      17.538   0.448  14.133  1.00  0.00              
ATOM     17  N   HIS    76      18.662   1.853  12.797  1.00  0.00              
ATOM     18  CA  HIS    76      19.524   2.332  13.873  1.00  0.00              
ATOM     19  C   HIS    76      18.762   3.224  14.852  1.00  0.00              
ATOM     20  O   HIS    76      18.881   3.056  16.070  1.00  0.00              
ATOM     21  N   SER    77      17.984   4.161  14.315  1.00  0.00              
ATOM     22  CA  SER    77      17.179   5.094  15.098  1.00  0.00              
ATOM     23  C   SER    77      16.190   4.327  15.995  1.00  0.00              
ATOM     24  O   SER    77      16.142   4.531  17.208  1.00  0.00              
ATOM     25  N   ALA    78      15.423   3.417  15.396  1.00  0.00              
ATOM     26  CA  ALA    78      14.478   2.599  16.155  1.00  0.00              
ATOM     27  C   ALA    78      15.162   1.901  17.323  1.00  0.00              
ATOM     28  O   ALA    78      14.737   2.042  18.469  1.00  0.00              
ATOM     29  N   HIS    79      16.219   1.156  17.017  1.00  0.00              
ATOM     30  CA  HIS    79      16.943   0.409  18.040  1.00  0.00              
ATOM     31  C   HIS    79      17.533   1.324  19.099  1.00  0.00              
ATOM     32  O   HIS    79      17.356   1.104  20.302  1.00  0.00              
ATOM     33  N   PHE    80      18.207   2.368  18.641  1.00  0.00              
ATOM     34  CA  PHE    80      18.856   3.285  19.550  1.00  0.00              
ATOM     35  C   PHE    80      17.914   4.169  20.377  1.00  0.00              
ATOM     36  O   PHE    80      18.162   4.364  21.573  1.00  0.00              
ATOM     37  N   PHE    81      16.844   4.685  19.777  1.00  0.00              
ATOM     38  CA  PHE    81      15.914   5.496  20.531  1.00  0.00              
ATOM     39  C   PHE    81      15.230   4.643  21.619  1.00  0.00              
ATOM     40  O   PHE    81      15.107   5.072  22.779  1.00  0.00              
ATOM     41  N   GLU    82      14.842   3.414  21.248  1.00  0.00              
ATOM     42  CA  GLU    82      14.165   2.514  22.166  1.00  0.00              
ATOM     43  C   GLU    82      15.013   2.123  23.356  1.00  0.00              
ATOM     44  O   GLU    82      14.517   2.018  24.468  1.00  0.00              
ATOM     45  N   PHE    83      16.296   1.919  23.106  1.00  0.00              
ATOM     46  CA  PHE    83      17.225   1.541  24.145  1.00  0.00              
ATOM     47  C   PHE    83      17.367   2.710  25.111  1.00  0.00              
ATOM     48  O   PHE    83      17.199   2.535  26.309  1.00  0.00              
ATOM     49  N   LEU    84      17.555   3.915  24.571  1.00  0.00              
ATOM     50  CA  LEU    84      17.710   5.130  25.364  1.00  0.00              
ATOM     51  C   LEU    84      16.437   5.509  26.148  1.00  0.00              
ATOM     52  O   LEU    84      16.503   5.918  27.319  1.00  0.00              
ATOM     53  N   THR    85      15.281   5.397  25.514  1.00  0.00              
ATOM     54  CA  THR    85      14.051   5.734  26.206  1.00  0.00              
ATOM     55  C   THR    85      13.819   4.729  27.343  1.00  0.00              
ATOM     56  O   THR    85      13.607   5.133  28.483  1.00  0.00              
ATOM     57  N   LYS    86      13.975   3.435  27.076  1.00  0.00              
ATOM     58  CA  LYS    86      13.757   2.451  28.125  1.00  0.00              
ATOM     59  C   LYS    86      14.698   2.563  29.302  1.00  0.00              
ATOM     60  O   LYS    86      14.239   2.666  30.448  1.00  0.00              
ATOM     61  N   GLU    87      16.001   2.552  29.042  1.00  0.00              
ATOM     62  CA  GLU    87      16.976   2.610  30.130  1.00  0.00              
ATOM     63  C   GLU    87      17.114   3.957  30.845  1.00  0.00              
ATOM     64  O   GLU    87      17.338   3.997  32.051  1.00  0.00              
ATOM     65  N   LEU    88      16.898   5.055  30.132  1.00  0.00              
ATOM     66  CA  LEU    88      17.087   6.353  30.733  1.00  0.00              
ATOM     67  C   LEU    88      15.797   7.079  30.927  1.00  0.00              
ATOM     68  O   LEU    88      15.808   8.213  31.379  1.00  0.00              
ATOM     69  N   ALA    89      14.686   6.463  30.537  1.00  0.00              
ATOM     70  CA  ALA    89      13.368   7.082  30.685  1.00  0.00              
ATOM     71  C   ALA    89      13.211   8.495  30.071  1.00  0.00              
ATOM     72  O   ALA    89      13.020   9.497  30.770  1.00  0.00              
ATOM     73  N   LEU    90      13.300   8.547  28.751  1.00  0.00              
ATOM     74  CA  LEU    90      13.140   9.770  27.973  1.00  0.00              
ATOM     75  C   LEU    90      12.020   9.350  27.017  1.00  0.00              
ATOM     76  O   LEU    90      11.955   8.186  26.627  1.00  0.00              
ATOM     77  N   GLY    91      11.130  10.268  26.661  1.00  0.00              
ATOM     78  CA  GLY    91      10.044   9.957  25.733  1.00  0.00              
ATOM     79  C   GLY    91      10.721   9.745  24.388  1.00  0.00              
ATOM     80  O   GLY    91      11.640  10.479  24.036  1.00  0.00              
ATOM     81  N   GLN    92      10.312   8.707  23.641  1.00  0.00              
ATOM     82  CA  GLN    92      10.916   8.429  22.336  1.00  0.00              
ATOM     83  C   GLN    92      10.978   9.635  21.409  1.00  0.00              
ATOM     84  O   GLN    92      11.975   9.828  20.708  1.00  0.00              
ATOM     85  N   ASP    93       9.967  10.501  21.453  1.00  0.00              
ATOM     86  CA  ASP    93      10.001  11.670  20.589  1.00  0.00              
ATOM     87  C   ASP    93      10.972  12.744  21.057  1.00  0.00              
ATOM     88  O   ASP    93      11.047  13.809  20.463  1.00  0.00              
ATOM     89  N   ARG    94      11.724  12.461  22.108  1.00  0.00              
ATOM     90  CA  ARG    94      12.678  13.426  22.622  1.00  0.00              
ATOM     91  C   ARG    94      14.145  12.994  22.484  1.00  0.00              
ATOM     92  O   ARG    94      15.053  13.603  23.090  1.00  0.00              
ATOM     93  N   ILE    95      14.365  11.928  21.717  1.00  0.00              
ATOM     94  CA  ILE    95      15.707  11.407  21.443  1.00  0.00              
ATOM     95  C   ILE    95      16.023  11.697  19.983  1.00  0.00              
ATOM     96  O   ILE    95      15.413  11.114  19.109  1.00  0.00              
ATOM     97  N   LEU    96      16.980  12.565  19.718  1.00  0.00              
ATOM     98  CA  LEU    96      17.330  12.905  18.346  1.00  0.00              
ATOM     99  C   LEU    96      18.716  12.366  18.001  1.00  0.00              
ATOM    100  O   LEU    96      19.647  12.511  18.798  1.00  0.00              
ATOM    101  N   ILE    97      18.835  11.747  16.819  1.00  0.00              
ATOM    102  CA  ILE    97      20.099  11.191  16.343  1.00  0.00              
ATOM    103  C   ILE    97      20.559  11.694  14.969  1.00  0.00              
ATOM    104  O   ILE    97      19.859  11.564  13.992  1.00  0.00              
ATOM    105  N   ARG    98      21.743  12.256  14.898  1.00  0.00              
ATOM    106  CA  ARG    98      22.283  12.679  13.633  1.00  0.00              
ATOM    107  C   ARG    98      23.347  11.633  13.221  1.00  0.00              
ATOM    108  O   ARG    98      24.052  11.065  14.093  1.00  0.00              
ATOM    109  N   PHE    99      23.433  11.353  11.910  1.00  0.00              
ATOM    110  CA  PHE    99      24.387  10.404  11.344  1.00  0.00              
ATOM    111  C   PHE    99      25.435  11.141  10.526  1.00  0.00              
ATOM    112  O   PHE    99      25.112  11.992   9.706  1.00  0.00              
ATOM    113  N   PHE   100      26.698  10.870  10.789  1.00  0.00              
ATOM    114  CA  PHE   100      27.743  11.571  10.098  1.00  0.00              
ATOM    115  C   PHE   100      28.644  10.574   9.445  1.00  0.00              
ATOM    116  O   PHE   100      28.972   9.559  10.027  1.00  0.00              
ATOM    117  N   PRO   101      29.052  10.870   8.227  1.00  0.00              
ATOM    118  CA  PRO   101      29.955  10.007   7.499  1.00  0.00              
ATOM    119  C   PRO   101      31.336  10.430   7.981  1.00  0.00              
ATOM    120  O   PRO   101      31.944  11.323   7.396  1.00  0.00              
ATOM    121  N   LEU   102      31.775   9.840   9.099  1.00  0.00              
ATOM    122  CA  LEU   102      33.070  10.113   9.744  1.00  0.00              
ATOM    123  C   LEU   102      34.235  10.324   8.799  1.00  0.00              
ATOM    124  O   LEU   102      35.288  10.826   9.205  1.00  0.00              
ATOM    125  N   GLU   103      34.090   9.869   7.565  1.00  0.00              
ATOM    126  CA  GLU   103      35.135  10.084   6.590  1.00  0.00              
ATOM    127  C   GLU   103      34.497  10.420   5.269  1.00  0.00              
ATOM    128  O   GLU   103      34.336   9.548   4.408  1.00  0.00              
ATOM    129  N   SER   104      34.050  11.664   5.171  1.00  0.00              
ATOM    130  CA  SER   104      33.441  12.209   3.980  1.00  0.00              
ATOM    131  C   SER   104      33.693  13.690   4.142  1.00  0.00              
ATOM    132  O   SER   104      32.903  14.333   4.862  1.00  0.00              
END
