REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0059AL212_2 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : BRYANT 
REMARK  ---------------------------------------------------------- 
TARGET T0059  
REMARK =======================================================================  
AUTHOR 2738-1421-4442  
REMARK This prediction was prepared by Anna Panchenko and  
REMARK Aron Marchler-Bauer, NCBI.  
REMARK =======================================================================  
METHOD Predictions were made with the potential and alignment model used in  
METHOD CASP1 and CASP2 predictions, as described by Madej et al. in Proteins  
METHOD 23:356-369, 1995. Convergence control has been added to the Gibbs-  
METHOD Sampling alignment model. In addition to contact-based threading  
METHOD potentials, PSSMs summarizing sequence conservation in the family  
METHOD represented by the template structure are used to score threading  
METHOD alignments. Threading "cores" summarizing the conserved substructure  
METHOD in the templates used for models below have been based on structure  
METHOD superpositions generated by VAST (Gibrat et al., Curr Opin Struct  
METHOD Biol 1996 Jun;6(3):377-385 ).  
METHOD The alignments have been calculated with the Gibbs Sampling threading  
METHOD engine. No single template has been identified in threading database  
METHOD searches with unambiguous scores/p-values. We therefore submit "NONE"  
METHOD as model no. 1, indicating that the automated search methods have not  
METHOD indicated a clearly favored template. One of the top scoring threading  
METHOD hits was listed as models 2 and 3, aligned with PSSMs and a weight of  
METHOD 0.5 and with the purely contact-based threader, respectively.  
REMARK =======================================================================  
MODEL  2  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1pys_B 
ATOM      1  N   MET     1     -18.844  92.435  15.054  1.00  0.00              
ATOM      2  CA  MET     1     -19.952  92.943  14.232  1.00  0.00              
ATOM      3  C   MET     1     -20.227  94.442  14.436  1.00  0.00              
ATOM      4  O   MET     1     -19.849  95.025  15.450  1.00  0.00              
ATOM      5  N   SER     2     -20.891  95.066  13.473  1.00  0.00              
ATOM      6  CA  SER     2     -21.220  96.483  13.605  1.00  0.00              
ATOM      7  C   SER     2     -22.388  96.622  14.597  1.00  0.00              
ATOM      8  O   SER     2     -22.603  97.681  15.191  1.00  0.00              
ATOM      9  N   ILE     3     -23.101  95.515  14.808  1.00  0.00              
ATOM     10  CA  ILE     3     -24.227  95.502  15.719  1.00  0.00              
ATOM     11  C   ILE     3     -23.824  95.618  17.178  1.00  0.00              
ATOM     12  O   ILE     3     -24.676  95.852  18.034  1.00  0.00              
ATOM     13  N   GLY     4     -22.540  95.437  17.475  1.00  0.00              
ATOM     14  CA  GLY     4     -22.052  95.522  18.837  1.00  0.00              
ATOM     15  C   GLY     4     -21.623  96.949  19.036  1.00  0.00              
ATOM     16  O   GLY     4     -20.815  97.443  18.280  1.00  0.00              
ATOM     17  N   VAL     5     -22.203  97.649  20.000  1.00  0.00              
ATOM     18  CA  VAL     5     -21.823  99.046  20.231  1.00  0.00              
ATOM     19  C   VAL     5     -21.306  99.211  21.649  1.00  0.00              
ATOM     20  O   VAL     5     -21.406  98.276  22.444  1.00  0.00              
ATOM     21  N   PRO     6     -20.743 100.382  21.949  1.00  0.00              
ATOM     22  CA  PRO     6     -20.239 100.690  23.279  1.00  0.00              
ATOM     23  C   PRO     6     -21.326 101.442  24.042  1.00  0.00              
ATOM     24  O   PRO     6     -21.759 102.500  23.602  1.00  0.00              
ATOM     25  N   ILE     7     -21.730 100.935  25.201  1.00  0.00              
ATOM     26  CA  ILE     7     -22.753 101.599  26.002  1.00  0.00              
ATOM     27  C   ILE     7     -22.298 101.813  27.432  1.00  0.00              
ATOM     28  O   ILE     7     -21.576 100.984  28.011  1.00  0.00              
ATOM     29  N   LYS     8     -22.731 102.929  28.001  1.00  0.00              
ATOM     30  CA  LYS     8     -22.391 103.284  29.365  1.00  0.00              
ATOM     31  C   LYS     8     -23.570 102.904  30.240  1.00  0.00              
ATOM     32  O   LYS     8     -24.704 103.216  29.895  1.00  0.00              
ATOM     33  N   VAL     9     -23.319 102.179  31.327  1.00  0.00              
ATOM     34  CA  VAL     9     -24.388 101.760  32.244  1.00  0.00              
ATOM     35  C   VAL     9     -24.677 102.907  33.221  1.00  0.00              
ATOM     36  O   VAL     9     -23.839 103.245  34.080  1.00  0.00              
ATOM     37  N   HIS    16     -32.915  87.115  40.320  1.00  0.00              
ATOM     38  CA  HIS    16     -31.499  87.404  40.505  1.00  0.00              
ATOM     39  C   HIS    16     -31.066  88.225  39.293  1.00  0.00              
ATOM     40  O   HIS    16     -29.884  88.463  39.085  1.00  0.00              
ATOM     41  N   ILE    17     -32.046  88.660  38.511  1.00  0.00              
ATOM     42  CA  ILE    17     -31.790  89.441  37.324  1.00  0.00              
ATOM     43  C   ILE    17     -31.849  90.911  37.632  1.00  0.00              
ATOM     44  O   ILE    17     -32.537  91.327  38.554  1.00  0.00              
ATOM     45  N   VAL    18     -31.162  91.691  36.813  1.00  0.00              
ATOM     46  CA  VAL    18     -31.129  93.133  36.951  1.00  0.00              
ATOM     47  C   VAL    18     -31.517  93.769  35.642  1.00  0.00              
ATOM     48  O   VAL    18     -31.323  93.188  34.579  1.00  0.00              
ATOM     49  N   THR    19     -32.060  94.972  35.742  1.00  0.00              
ATOM     50  CA  THR    19     -32.487  95.762  34.601  1.00  0.00              
ATOM     51  C   THR    19     -31.493  96.904  34.498  1.00  0.00              
ATOM     52  O   THR    19     -31.526  97.828  35.304  1.00  0.00              
ATOM     53  N   CYS    20     -30.562  96.791  33.557  1.00  0.00              
ATOM     54  CA  CYS    20     -29.556  97.820  33.341  1.00  0.00              
ATOM     55  C   CYS    20     -30.163  98.850  32.411  1.00  0.00              
ATOM     56  O   CYS    20     -30.842  98.492  31.458  1.00  0.00              
ATOM     57  N   GLU    21     -29.962 100.119  32.724  1.00  0.00              
ATOM     58  CA  GLU    21     -30.447 101.213  31.901  1.00  0.00              
ATOM     59  C   GLU    21     -29.150 101.722  31.300  1.00  0.00              
ATOM     60  O   GLU    21     -28.270 102.199  32.026  1.00  0.00              
ATOM     61  N   THR    22     -29.023 101.623  29.983  1.00  0.00              
ATOM     62  CA  THR    22     -27.801 102.031  29.316  1.00  0.00              
ATOM     63  C   THR    22     -27.923 103.239  28.432  1.00  0.00              
ATOM     64  O   THR    22     -28.924 103.406  27.742  1.00  0.00              
ATOM     65  N   ASN    23     -26.893 104.075  28.437  1.00  0.00              
ATOM     66  CA  ASN    23     -26.842 105.210  27.523  1.00  0.00              
ATOM     67  C   ASN    23     -26.100 104.588  26.334  1.00  0.00              
ATOM     68  O   ASN    23     -24.906 104.328  26.424  1.00  0.00              
ATOM     69  N   THR    24     -26.804 104.259  25.263  1.00  0.00              
ATOM     70  CA  THR    24     -26.134 103.673  24.108  1.00  0.00              
ATOM     71  C   THR    24     -26.394 104.574  22.916  1.00  0.00              
ATOM     72  O   THR    24     -26.626 104.104  21.796  1.00  0.00              
ATOM     73  N   GLY    25     -26.311 105.878  23.162  1.00  0.00              
ATOM     74  CA  GLY    25     -26.578 106.853  22.127  1.00  0.00              
ATOM     75  C   GLY    25     -27.987 107.306  22.429  1.00  0.00              
ATOM     76  O   GLY    25     -28.286 108.492  22.519  1.00  0.00              
ATOM     77  N   TYR    28     -28.843 106.322  22.639  1.00  0.00              
ATOM     78  CA  TYR    28     -30.238 106.507  22.993  1.00  0.00              
ATOM     79  C   TYR    28     -30.306 105.689  24.282  1.00  0.00              
ATOM     80  O   TYR    28     -29.477 104.798  24.502  1.00  0.00              
ATOM     81  N   ARG    29     -31.248 105.991  25.152  1.00  0.00              
ATOM     82  CA  ARG    29     -31.340 105.247  26.387  1.00  0.00              
ATOM     83  C   ARG    29     -32.110 103.958  26.166  1.00  0.00              
ATOM     84  O   ARG    29     -33.252 103.984  25.756  1.00  0.00              
ATOM     85  N   GLY    30     -31.457 102.828  26.363  1.00  0.00              
ATOM     86  CA  GLY    30     -32.111 101.546  26.185  1.00  0.00              
ATOM     87  C   GLY    30     -32.007 100.825  27.510  1.00  0.00              
ATOM     88  O   GLY    30     -31.304 101.287  28.416  1.00  0.00              
ATOM     89  N   LYS    31     -32.703  99.698  27.620  1.00  0.00              
ATOM     90  CA  LYS    31     -32.694  98.890  28.824  1.00  0.00              
ATOM     91  C   LYS    31     -32.390  97.440  28.463  1.00  0.00              
ATOM     92  O   LYS    31     -32.845  96.930  27.450  1.00  0.00              
ATOM     93  N   LEU    32     -31.609  96.773  29.292  1.00  0.00              
ATOM     94  CA  LEU    32     -31.224  95.405  29.029  1.00  0.00              
ATOM     95  C   LEU    32     -31.327  94.665  30.349  1.00  0.00              
ATOM     96  O   LEU    32     -31.105  95.245  31.406  1.00  0.00              
ATOM     97  N   ILE    33     -31.747  93.415  30.291  1.00  0.00              
ATOM     98  CA  ILE    33     -31.858  92.576  31.471  1.00  0.00              
ATOM     99  C   ILE    33     -30.586  91.749  31.495  1.00  0.00              
ATOM    100  O   ILE    33     -30.128  91.308  30.445  1.00  0.00              
ATOM    101  N   GLU    34     -30.029  91.512  32.678  1.00  0.00              
ATOM    102  CA  GLU    34     -28.807  90.731  32.792  1.00  0.00              
ATOM    103  C   GLU    34     -28.700  90.118  34.165  1.00  0.00              
ATOM    104  O   GLU    34     -29.095  90.726  35.143  1.00  0.00              
ATOM    105  N   ALA    35     -28.164  88.908  34.227  1.00  0.00              
ATOM    106  CA  ALA    35     -27.953  88.257  35.503  1.00  0.00              
ATOM    107  C   ALA    35     -26.462  88.121  35.829  1.00  0.00              
ATOM    108  O   ALA    35     -26.089  87.298  36.669  1.00  0.00              
ATOM    109  N   GLU    36     -25.614  88.913  35.160  1.00  0.00              
ATOM    110  CA  GLU    36     -24.156  88.884  35.350  1.00  0.00              
ATOM    111  C   GLU    36     -23.777  89.409  36.703  1.00  0.00              
ATOM    112  O   GLU    36     -24.143  90.516  37.061  1.00  0.00              
ATOM    113  N   ASP    37     -22.979  88.647  37.425  1.00  0.00              
ATOM    114  CA  ASP    37     -22.541  89.054  38.741  1.00  0.00              
ATOM    115  C   ASP    37     -21.853  90.403  38.797  1.00  0.00              
ATOM    116  O   ASP    37     -21.684  90.952  39.874  1.00  0.00              
ATOM    117  N   ASN    38     -21.486  90.962  37.652  1.00  0.00              
ATOM    118  CA  ASN    38     -20.776  92.232  37.660  1.00  0.00              
ATOM    119  C   ASN    38     -21.420  93.369  36.914  1.00  0.00              
ATOM    120  O   ASN    38     -20.766  94.372  36.636  1.00  0.00              
ATOM    121  N   MET    39     -22.696  93.223  36.574  1.00  0.00              
ATOM    122  CA  MET    39     -23.383  94.309  35.904  1.00  0.00              
ATOM    123  C   MET    39     -23.630  95.300  37.034  1.00  0.00              
ATOM    124  O   MET    39     -24.115  94.932  38.107  1.00  0.00              
ATOM    125  N   SER    44     -19.863 101.692  34.388  1.00  0.00              
ATOM    126  CA  SER    44     -18.893 101.001  33.558  1.00  0.00              
ATOM    127  C   SER    44     -19.363 100.987  32.109  1.00  0.00              
ATOM    128  O   SER    44     -20.517 101.326  31.811  1.00  0.00              
ATOM    129  N   ASN    45     -18.460 100.628  31.204  1.00  0.00              
ATOM    130  CA  ASN    45     -18.818 100.542  29.799  1.00  0.00              
ATOM    131  C   ASN    45     -19.003  99.074  29.508  1.00  0.00              
ATOM    132  O   ASN    45     -18.328  98.237  30.101  1.00  0.00              
ATOM    133  N   ILE    46     -19.948  98.738  28.649  1.00  0.00              
ATOM    134  CA  ILE    46     -20.197  97.344  28.318  1.00  0.00              
ATOM    135  C   ILE    46     -20.303  97.256  26.811  1.00  0.00              
ATOM    136  O   ILE    46     -20.423  98.276  26.126  1.00  0.00              
ATOM    137  N   THR    47     -20.257  96.044  26.285  1.00  0.00              
ATOM    138  CA  THR    47     -20.382  95.862  24.855  1.00  0.00              
ATOM    139  C   THR    47     -21.819  95.408  24.633  1.00  0.00              
ATOM    140  O   THR    47     -22.171  94.261  24.960  1.00  0.00              
ATOM    141  N   VAL    48     -22.648  96.297  24.094  1.00  0.00              
ATOM    142  CA  VAL    48     -24.058  95.964  23.860  1.00  0.00              
ATOM    143  C   VAL    48     -24.272  95.386  22.470  1.00  0.00              
ATOM    144  O   VAL    48     -23.858  96.000  21.486  1.00  0.00              
ATOM    145  N   THR    49     -24.925  94.230  22.373  1.00  0.00              
ATOM    146  CA  THR    49     -25.221  93.636  21.059  1.00  0.00              
ATOM    147  C   THR    49     -26.650  94.031  20.698  1.00  0.00              
ATOM    148  O   THR    49     -27.602  93.486  21.238  1.00  0.00              
ATOM    149  N   VAL    55     -23.377  82.092  18.469  1.00  0.00              
ATOM    150  CA  VAL    55     -23.898  81.584  17.209  1.00  0.00              
ATOM    151  C   VAL    55     -25.357  81.813  16.849  1.00  0.00              
ATOM    152  O   VAL    55     -25.824  81.303  15.826  1.00  0.00              
ATOM    153  N   ALA    56     -26.081  82.568  17.671  1.00  0.00              
ATOM    154  CA  ALA    56     -27.492  82.841  17.407  1.00  0.00              
ATOM    155  C   ALA    56     -27.706  84.312  17.142  1.00  0.00              
ATOM    156  O   ALA    56     -26.757  85.109  17.213  1.00  0.00              
ATOM    157  N   GLN    57     -28.941  84.671  16.810  1.00  0.00              
ATOM    158  CA  GLN    57     -29.235  86.060  16.521  1.00  0.00              
ATOM    159  C   GLN    57     -29.801  86.741  17.752  1.00  0.00              
ATOM    160  O   GLN    57     -30.647  86.178  18.455  1.00  0.00              
ATOM    161  N   LEU    58     -29.263  87.920  18.041  1.00  0.00              
ATOM    162  CA  LEU    58     -29.676  88.727  19.179  1.00  0.00              
ATOM    163  C   LEU    58     -30.993  89.390  18.821  1.00  0.00              
ATOM    164  O   LEU    58     -31.166  89.865  17.699  1.00  0.00              
ATOM    165  N   GLU    59     -31.930  89.405  19.756  1.00  0.00              
ATOM    166  CA  GLU    59     -33.199  90.041  19.485  1.00  0.00              
ATOM    167  C   GLU    59     -33.726  90.745  20.711  1.00  0.00              
ATOM    168  O   GLU    59     -33.216  90.520  21.813  1.00  0.00              
ATOM    169  N   GLN    60     -34.664  91.668  20.517  1.00  0.00              
ATOM    170  CA  GLN    60     -35.284  92.371  21.640  1.00  0.00              
ATOM    171  C   GLN    60     -36.212  91.331  22.226  1.00  0.00              
ATOM    172  O   GLN    60     -36.881  90.642  21.474  1.00  0.00              
ATOM    173  N   VAL    61     -36.234  91.153  23.536  1.00  0.00              
ATOM    174  CA  VAL    61     -37.125  90.142  24.091  1.00  0.00              
ATOM    175  C   VAL    61     -37.631  90.457  25.468  1.00  0.00              
ATOM    176  O   VAL    61     -37.030  91.250  26.191  1.00  0.00              
ATOM    177  N   TYR    62     -38.773  89.875  25.804  1.00  0.00              
ATOM    178  CA  TYR    62     -39.385  90.094  27.110  1.00  0.00              
ATOM    179  C   TYR    62     -38.788  89.117  28.134  1.00  0.00              
ATOM    180  O   TYR    62     -38.743  87.914  27.902  1.00  0.00              
ATOM    181  N   ILE    63     -38.224  89.663  29.212  1.00  0.00              
ATOM    182  CA  ILE    63     -37.621  88.877  30.290  1.00  0.00              
ATOM    183  C   ILE    63     -38.110  89.425  31.635  1.00  0.00              
ATOM    184  O   ILE    63     -37.848  90.570  31.980  1.00  0.00              
ATOM    185  N   ARG    64     -38.916  88.625  32.325  1.00  0.00              
ATOM    186  CA  ARG    64     -39.477  88.993  33.611  1.00  0.00              
ATOM    187  C   ARG    64     -40.114  90.380  33.650  1.00  0.00              
ATOM    188  O   ARG    64     -39.789  91.200  34.502  1.00  0.00              
ATOM    189  N   GLY    65     -41.004  90.660  32.709  1.00  0.00              
ATOM    190  CA  GLY    65     -41.692  91.938  32.722  1.00  0.00              
ATOM    191  C   GLY    65     -40.974  93.103  32.082  1.00  0.00              
ATOM    192  O   GLY    65     -41.582  94.172  31.889  1.00  0.00              
ATOM    193  N   SER    66     -39.679  92.962  31.802  1.00  0.00              
ATOM    194  CA  SER    66     -38.977  94.068  31.159  1.00  0.00              
ATOM    195  C   SER    66     -38.567  93.640  29.757  1.00  0.00              
ATOM    196  O   SER    66     -38.256  92.476  29.541  1.00  0.00              
ATOM    197  N   LYS    67     -38.691  94.541  28.784  1.00  0.00              
ATOM    198  CA  LYS    67     -38.314  94.203  27.418  1.00  0.00              
ATOM    199  C   LYS    67     -36.888  94.623  27.214  1.00  0.00              
ATOM    200  O   LYS    67     -36.558  95.796  27.291  1.00  0.00              
ATOM    201  N   ILE    68     -36.050  93.610  27.051  1.00  0.00              
ATOM    202  CA  ILE    68     -34.616  93.721  26.861  1.00  0.00              
ATOM    203  C   ILE    68     -34.237  94.043  25.418  1.00  0.00              
ATOM    204  O   ILE    68     -34.436  93.244  24.506  1.00  0.00              
ATOM    205  N   ARG    69     -33.637  95.196  25.220  1.00  0.00              
ATOM    206  CA  ARG    69     -33.222  95.607  23.896  1.00  0.00              
ATOM    207  C   ARG    69     -31.804  95.101  23.589  1.00  0.00              
ATOM    208  O   ARG    69     -30.845  95.860  23.603  1.00  0.00              
ATOM    209  N   PHE    70     -31.662  93.814  23.318  1.00  0.00              
ATOM    210  CA  PHE    70     -30.345  93.302  23.009  1.00  0.00              
ATOM    211  C   PHE    70     -29.727  92.713  24.249  1.00  0.00              
ATOM    212  O   PHE    70     -30.444  92.365  25.187  1.00  0.00              
ATOM    213  N   LEU    71     -28.406  92.577  24.263  1.00  0.00              
ATOM    214  CA  LEU    71     -27.759  92.021  25.423  1.00  0.00              
ATOM    215  C   LEU    71     -26.310  92.403  25.573  1.00  0.00              
ATOM    216  O   LEU    71     -25.579  92.479  24.588  1.00  0.00              
ATOM    217  N   ILE    72     -25.938  92.737  26.809  1.00  0.00              
ATOM    218  CA  ILE    72     -24.580  93.096  27.165  1.00  0.00              
ATOM    219  C   ILE    72     -23.769  91.813  27.018  1.00  0.00              
ATOM    220  O   ILE    72     -24.226  90.752  27.427  1.00  0.00              
ATOM    221  N   LEU    73     -22.541  91.902  26.526  1.00  0.00              
ATOM    222  CA  LEU    73     -21.775  90.686  26.272  1.00  0.00              
ATOM    223  C   LEU    73     -20.612  90.303  27.199  1.00  0.00              
ATOM    224  O   LEU    73     -20.023  91.158  27.849  1.00  0.00              
ATOM    225  N   PRO    74     -20.306  89.005  27.259  1.00  0.00              
ATOM    226  CA  PRO    74     -19.192  88.480  28.053  1.00  0.00              
ATOM    227  C   PRO    74     -18.015  88.227  27.080  1.00  0.00              
ATOM    228  O   PRO    74     -18.231  88.003  25.882  1.00  0.00              
END
