REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0059AL201_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : TATSUYA-AKUTSU 
REMARK  ---------------------------------------------------------- 
TARGET T0059  
AUTHOR 7648-2940-6918  
REMARK   
METHOD We align a target sequence with structurally aligned sequences  
METHOD (i.e., multiple structure alignment), where a multiple structure  
METHOD alignment is computed from results of pairwise structure alignments  
METHOD for similar structures.   
METHOD Pairwise structure alignments are computed using a computer  
METHOD program STRALIGN [1] developed by the group-leader and they are  
METHOD combined into a multiple structure alignment using a method like  
METHOD center-star alignment.  
METHOD A simple dynamic programming procedure (Smith-Waterman like procedure)  
METHOD is used for computing an alignment between a target sequence and  
METHOD the aligned sequences.  
METHOD Finally, an alignment between a target and one of the aligned  
METHOD sequences (i.e., template sequence) is extracted and refined.  
METHOD Human knowledge is also used to find template structures and  
METHOD to refine alignments.  
METHOD  
METHOD [1] T. Akutsu: Protein structure alignment using dynamic programming  
METHOD and iterative alignment, IEICE Transactions on Information and Systems,  
METHOD vol. E79-D, pp. 1629--1636, 1996.  
METHOD  
METHOD Program code of STRALIGN is available via  
METHOD http://www.hgc.ims.u-tokyo.ac.jp/service/tooldoc/stralign/intro.html  
MODEL  1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1cid 
ATOM      1  N   MET     1     -17.108  25.866  23.850  1.00  0.00              
ATOM      2  CA  MET     1     -16.775  27.193  23.310  1.00  0.00              
ATOM      3  C   MET     1     -16.102  27.977  24.409  1.00  0.00              
ATOM      4  O   MET     1     -14.931  27.736  24.702  1.00  0.00              
ATOM      5  N   SER     2     -16.873  28.855  24.984  1.00  0.00              
ATOM      6  CA  SER     2     -16.420  29.817  26.019  1.00  0.00              
ATOM      7  C   SER     2     -15.293  29.314  26.966  1.00  0.00              
ATOM      8  O   SER     2     -15.134  28.108  27.203  1.00  0.00              
ATOM      9  N   ILE     3     -14.564  30.330  27.479  1.00  0.00              
ATOM     10  CA  ILE     3     -13.441  30.197  28.461  1.00  0.00              
ATOM     11  C   ILE     3     -13.356  31.499  29.319  1.00  0.00              
ATOM     12  O   ILE     3     -13.343  32.624  28.786  1.00  0.00              
ATOM     13  N   GLY     4     -13.302  31.393  30.678  1.00  0.00              
ATOM     14  CA  GLY     4     -13.252  32.648  31.479  1.00  0.00              
ATOM     15  C   GLY     4     -12.018  32.598  32.366  1.00  0.00              
ATOM     16  O   GLY     4     -11.704  31.490  32.732  1.00  0.00              
ATOM     17  N   VAL     5     -11.442  33.758  32.477  1.00  0.00              
ATOM     18  CA  VAL     5     -10.210  33.791  33.268  1.00  0.00              
ATOM     19  C   VAL     5     -10.539  34.938  34.216  1.00  0.00              
ATOM     20  O   VAL     5     -11.022  35.949  33.714  1.00  0.00              
ATOM     21  N   GLU    12      -5.819  42.230  39.536  1.00  0.00              
ATOM     22  CA  GLU    12      -5.017  43.121  38.769  1.00  0.00              
ATOM     23  C   GLU    12      -3.569  42.909  38.990  1.00  0.00              
ATOM     24  O   GLU    12      -3.166  42.708  40.129  1.00  0.00              
ATOM     25  N   ALA    13      -2.795  43.065  37.962  1.00  0.00              
ATOM     26  CA  ALA    13      -1.340  42.952  37.969  1.00  0.00              
ATOM     27  C   ALA    13      -1.049  41.489  37.678  1.00  0.00              
ATOM     28  O   ALA    13       0.155  41.132  37.529  1.00  0.00              
ATOM     29  N   GLU    14      -2.018  40.605  37.562  1.00  0.00              
ATOM     30  CA  GLU    14      -1.596  39.197  37.258  1.00  0.00              
ATOM     31  C   GLU    14      -1.631  38.885  35.789  1.00  0.00              
ATOM     32  O   GLU    14      -2.140  39.652  34.980  1.00  0.00              
ATOM     33  N   GLY    15      -1.253  37.799  35.201  1.00  0.00              
ATOM     34  CA  GLY    15      -1.253  37.328  33.851  1.00  0.00              
ATOM     35  C   GLY    15      -2.465  36.504  33.555  1.00  0.00              
ATOM     36  O   GLY    15      -2.659  35.613  34.365  1.00  0.00              
ATOM     37  N   HIS    16      -3.265  36.580  32.540  1.00  0.00              
ATOM     38  CA  HIS    16      -4.370  35.719  32.176  1.00  0.00              
ATOM     39  C   HIS    16      -3.758  34.830  31.110  1.00  0.00              
ATOM     40  O   HIS    16      -3.115  35.383  30.229  1.00  0.00              
ATOM     41  N   ILE    17      -3.877  33.553  31.136  1.00  0.00              
ATOM     42  CA  ILE    17      -3.318  32.788  29.999  1.00  0.00              
ATOM     43  C   ILE    17      -4.417  31.843  29.517  1.00  0.00              
ATOM     44  O   ILE    17      -4.806  30.983  30.360  1.00  0.00              
ATOM     45  N   VAL    18      -4.827  31.978  28.280  1.00  0.00              
ATOM     46  CA  VAL    18      -5.875  31.054  27.744  1.00  0.00              
ATOM     47  C   VAL    18      -5.191  29.888  27.055  1.00  0.00              
ATOM     48  O   VAL    18      -4.055  30.148  26.650  1.00  0.00              
ATOM     49  N   THR    19      -5.683  28.685  26.950  1.00  0.00              
ATOM     50  CA  THR    19      -4.903  27.625  26.223  1.00  0.00              
ATOM     51  C   THR    19      -5.894  27.028  25.251  1.00  0.00              
ATOM     52  O   THR    19      -7.046  26.758  25.709  1.00  0.00              
ATOM     53  N   CYS    20      -5.601  26.848  23.976  1.00  0.00              
ATOM     54  CA  CYS    20      -6.618  26.329  22.978  1.00  0.00              
ATOM     55  C   CYS    20      -5.978  25.085  22.409  1.00  0.00              
ATOM     56  O   CYS    20      -4.974  25.129  21.685  1.00  0.00              
ATOM     57  N   GLU    21      -6.631  24.030  22.830  1.00  0.00              
ATOM     58  CA  GLU    21      -5.996  22.740  22.599  1.00  0.00              
ATOM     59  C   GLU    21      -6.444  21.725  21.610  1.00  0.00              
ATOM     60  O   GLU    21      -6.033  20.542  21.707  1.00  0.00              
ATOM     61  N   THR    22      -7.202  22.237  20.700  1.00  0.00              
ATOM     62  CA  THR    22      -7.903  21.567  19.630  1.00  0.00              
ATOM     63  C   THR    22      -7.145  20.971  18.446  1.00  0.00              
ATOM     64  O   THR    22      -6.275  21.572  17.810  1.00  0.00              
ATOM     65  N   ASN    23      -7.549  19.736  18.191  1.00  0.00              
ATOM     66  CA  ASN    23      -7.296  18.713  17.192  1.00  0.00              
ATOM     67  C   ASN    23      -5.966  18.784  16.450  1.00  0.00              
ATOM     68  O   ASN    23      -5.927  18.595  15.210  1.00  0.00              
ATOM     69  N   THR    24      -4.921  19.038  17.233  1.00  0.00              
ATOM     70  CA  THR    24      -3.560  19.282  16.699  1.00  0.00              
ATOM     71  C   THR    24      -2.944  18.197  15.786  1.00  0.00              
ATOM     72  O   THR    24      -2.073  17.399  16.205  1.00  0.00              
ATOM     73  N   GLY    25      -3.366  18.265  14.509  1.00  0.00              
ATOM     74  CA  GLY    25      -2.913  17.348  13.439  1.00  0.00              
ATOM     75  C   GLY    25      -1.731  18.060  12.775  1.00  0.00              
ATOM     76  O   GLY    25      -0.945  18.743  13.485  1.00  0.00              
ATOM     77  N   GLU    26      -1.721  17.879  11.460  1.00  0.00              
ATOM     78  CA  GLU    26      -0.564  18.579  10.815  1.00  0.00              
ATOM     79  C   GLU    26      -0.852  19.998  10.371  1.00  0.00              
ATOM     80  O   GLU    26      -0.013  20.676   9.708  1.00  0.00              
ATOM     81  N   VAL    27      -1.908  24.051   9.651  1.00  0.00              
ATOM     82  CA  VAL    27      -1.646  25.355   9.067  1.00  0.00              
ATOM     83  C   VAL    27      -3.039  26.069   9.107  1.00  0.00              
ATOM     84  O   VAL    27      -4.181  25.615   8.805  1.00  0.00              
ATOM     85  N   TYR    28      -2.861  27.264   9.636  1.00  0.00              
ATOM     86  CA  TYR    28      -3.992  28.154   9.844  1.00  0.00              
ATOM     87  C   TYR    28      -3.362  29.536   9.779  1.00  0.00              
ATOM     88  O   TYR    28      -2.143  29.754   9.797  1.00  0.00              
ATOM     89  N   ARG    29      -4.258  30.430   9.703  1.00  0.00              
ATOM     90  CA  ARG    29      -4.277  31.884   9.723  1.00  0.00              
ATOM     91  C   ARG    29      -5.247  31.927  10.948  1.00  0.00              
ATOM     92  O   ARG    29      -6.101  31.020  11.053  1.00  0.00              
ATOM     93  N   GLY    30      -5.088  32.830  11.849  1.00  0.00              
ATOM     94  CA  GLY    30      -5.924  32.894  13.050  1.00  0.00              
ATOM     95  C   GLY    30      -5.926  34.387  13.292  1.00  0.00              
ATOM     96  O   GLY    30      -4.985  35.043  12.854  1.00  0.00              
ATOM     97  N   LYS    31      -6.931  34.846  13.952  1.00  0.00              
ATOM     98  CA  LYS    31      -7.096  36.304  14.202  1.00  0.00              
ATOM     99  C   LYS    31      -7.748  36.304  15.560  1.00  0.00              
ATOM    100  O   LYS    31      -8.532  35.345  15.788  1.00  0.00              
ATOM    101  N   LEU    32      -7.531  37.197  16.484  1.00  0.00              
ATOM    102  CA  LEU    32      -8.152  37.365  17.774  1.00  0.00              
ATOM    103  C   LEU    32      -8.431  38.865  17.871  1.00  0.00              
ATOM    104  O   LEU    32      -7.518  39.687  17.737  1.00  0.00              
ATOM    105  N   ILE    33      -9.633  39.251  18.154  1.00  0.00              
ATOM    106  CA  ILE    33     -10.060  40.666  18.307  1.00  0.00              
ATOM    107  C   ILE    33     -10.723  40.748  19.680  1.00  0.00              
ATOM    108  O   ILE    33     -11.445  39.788  20.026  1.00  0.00              
ATOM    109  N   CYS    41     -12.723  50.136  19.420  1.00  0.00              
ATOM    110  CA  CYS    41     -12.430  49.027  18.491  1.00  0.00              
ATOM    111  C   CYS    41     -11.200  49.372  17.579  1.00  0.00              
ATOM    112  O   CYS    41     -10.994  50.284  16.779  1.00  0.00              
ATOM    113  N   GLN    42     -10.405  48.350  17.922  1.00  0.00              
ATOM    114  CA  GLN    42      -9.126  47.938  17.423  1.00  0.00              
ATOM    115  C   GLN    42      -8.282  47.124  18.418  1.00  0.00              
ATOM    116  O   GLN    42      -7.341  47.783  18.943  1.00  0.00              
ATOM    117  N   MET    43      -8.530  45.823  18.626  1.00  0.00              
ATOM    118  CA  MET    43      -7.552  45.072  19.462  1.00  0.00              
ATOM    119  C   MET    43      -7.375  43.818  18.620  1.00  0.00              
ATOM    120  O   MET    43      -8.468  43.411  18.196  1.00  0.00              
ATOM    121  N   SER    44      -6.202  43.331  18.359  1.00  0.00              
ATOM    122  CA  SER    44      -6.255  42.141  17.532  1.00  0.00              
ATOM    123  C   SER    44      -4.824  41.683  17.469  1.00  0.00              
ATOM    124  O   SER    44      -3.921  42.413  17.769  1.00  0.00              
ATOM    125  N   ILE    46      -4.748  40.515  16.967  1.00  0.00              
ATOM    126  CA  ILE    46      -3.440  39.907  16.788  1.00  0.00              
ATOM    127  C   ILE    46      -3.685  39.006  15.579  1.00  0.00              
ATOM    128  O   ILE    46      -4.740  38.358  15.663  1.00  0.00              
ATOM    129  N   THR    47      -2.802  39.026  14.570  1.00  0.00              
ATOM    130  CA  THR    47      -2.980  38.078  13.442  1.00  0.00              
ATOM    131  C   THR    47      -1.873  37.038  13.592  1.00  0.00              
ATOM    132  O   THR    47      -0.776  37.530  13.929  1.00  0.00              
ATOM    133  N   GLY    53       1.364  24.366  22.278  1.00  0.00              
ATOM    134  CA  GLY    53      -0.008  24.618  22.073  1.00  0.00              
ATOM    135  C   GLY    53      -0.915  25.731  21.812  1.00  0.00              
ATOM    136  O   GLY    53      -2.133  25.412  21.690  1.00  0.00              
ATOM    137  N   ARG    54      -0.402  26.866  21.491  1.00  0.00              
ATOM    138  CA  ARG    54      -1.313  27.935  21.146  1.00  0.00              
ATOM    139  C   ARG    54      -1.888  28.347  22.529  1.00  0.00              
ATOM    140  O   ARG    54      -2.955  27.855  22.960  1.00  0.00              
ATOM    141  N   VAL    55      -1.115  29.239  23.094  1.00  0.00              
ATOM    142  CA  VAL    55      -1.653  29.779  24.336  1.00  0.00              
ATOM    143  C   VAL    55      -1.528  31.259  24.025  1.00  0.00              
ATOM    144  O   VAL    55      -0.545  31.634  23.383  1.00  0.00              
ATOM    145  N   ALA    56      -2.512  32.019  24.407  1.00  0.00              
ATOM    146  CA  ALA    56      -2.514  33.470  24.207  1.00  0.00              
ATOM    147  C   ALA    56      -2.393  33.941  25.639  1.00  0.00              
ATOM    148  O   ALA    56      -2.988  33.397  26.552  1.00  0.00              
ATOM    149  N   GLN    57      -1.622  34.952  25.896  1.00  0.00              
ATOM    150  CA  GLN    57      -1.472  35.313  27.360  1.00  0.00              
ATOM    151  C   GLN    57      -1.665  36.769  27.488  1.00  0.00              
ATOM    152  O   GLN    57      -0.810  37.285  26.765  1.00  0.00              
ATOM    153  N   LEU    58      -2.584  37.412  28.145  1.00  0.00              
ATOM    154  CA  LEU    58      -2.611  38.917  28.248  1.00  0.00              
ATOM    155  C   LEU    58      -1.721  39.084  29.462  1.00  0.00              
ATOM    156  O   LEU    58      -1.988  38.354  30.419  1.00  0.00              
ATOM    157  N   GLU    59      -0.645  39.867  29.504  1.00  0.00              
ATOM    158  CA  GLU    59       0.313  39.792  30.614  1.00  0.00              
ATOM    159  C   GLU    59       0.434  40.550  31.914  1.00  0.00              
ATOM    160  O   GLU    59       1.284  40.155  32.811  1.00  0.00              
ATOM    161  N   GLN    60      -0.359  41.590  32.087  1.00  0.00              
ATOM    162  CA  GLN    60      -0.198  42.327  33.395  1.00  0.00              
ATOM    163  C   GLN    60      -1.526  43.036  33.284  1.00  0.00              
ATOM    164  O   GLN    60      -1.565  44.133  32.820  1.00  0.00              
ATOM    165  N   VAL    61      -2.508  42.199  33.646  1.00  0.00              
ATOM    166  CA  VAL    61      -3.928  42.515  33.677  1.00  0.00              
ATOM    167  C   VAL    61      -4.320  43.796  34.353  1.00  0.00              
ATOM    168  O   VAL    61      -3.608  44.346  35.195  1.00  0.00              
ATOM    169  N   TYR    62      -5.471  44.305  33.899  1.00  0.00              
ATOM    170  CA  TYR    62      -5.943  45.609  34.509  1.00  0.00              
ATOM    171  C   TYR    62      -7.440  45.684  34.287  1.00  0.00              
ATOM    172  O   TYR    62      -7.919  45.029  33.390  1.00  0.00              
ATOM    173  N   ILE    63      -8.261  46.294  35.115  1.00  0.00              
ATOM    174  CA  ILE    63      -9.696  46.395  35.022  1.00  0.00              
ATOM    175  C   ILE    63     -10.056  46.984  33.652  1.00  0.00              
ATOM    176  O   ILE    63     -11.178  46.726  33.168  1.00  0.00              
ATOM    177  N   ARG    64      -9.083  47.711  33.165  1.00  0.00              
ATOM    178  CA  ARG    64      -9.319  48.366  31.855  1.00  0.00              
ATOM    179  C   ARG    64      -9.259  47.391  30.692  1.00  0.00              
ATOM    180  O   ARG    64      -9.849  47.860  29.695  1.00  0.00              
ATOM    181  N   GLY    65     -13.100  42.393  29.421  1.00  0.00              
ATOM    182  CA  GLY    65     -14.163  42.359  28.427  1.00  0.00              
ATOM    183  C   GLY    65     -14.005  40.940  27.818  1.00  0.00              
ATOM    184  O   GLY    65     -13.553  40.086  28.587  1.00  0.00              
ATOM    185  N   SER    66     -14.307  40.694  26.558  1.00  0.00              
ATOM    186  CA  SER    66     -14.067  39.373  25.942  1.00  0.00              
ATOM    187  C   SER    66     -13.832  39.514  24.428  1.00  0.00              
ATOM    188  O   SER    66     -13.946  40.664  23.953  1.00  0.00              
ATOM    189  N   LYS    67     -13.486  38.416  23.810  1.00  0.00              
ATOM    190  CA  LYS    67     -13.175  38.487  22.382  1.00  0.00              
ATOM    191  C   LYS    67     -13.258  37.151  21.730  1.00  0.00              
ATOM    192  O   LYS    67     -13.350  36.230  22.541  1.00  0.00              
ATOM    193  N   ILE    68     -13.213  37.059  20.424  1.00  0.00              
ATOM    194  CA  ILE    68     -13.348  35.678  19.841  1.00  0.00              
ATOM    195  C   ILE    68     -12.047  35.314  19.166  1.00  0.00              
ATOM    196  O   ILE    68     -11.343  36.150  18.642  1.00  0.00              
ATOM    197  N   ARG    69     -11.614  34.112  19.140  1.00  0.00              
ATOM    198  CA  ARG    69     -10.407  33.639  18.521  1.00  0.00              
ATOM    199  C   ARG    69     -10.959  32.730  17.411  1.00  0.00              
ATOM    200  O   ARG    69     -11.393  31.594  17.669  1.00  0.00              
ATOM    201  N   PHE    70     -10.894  33.297  16.207  1.00  0.00              
ATOM    202  CA  PHE    70     -11.339  32.726  14.903  1.00  0.00              
ATOM    203  C   PHE    70     -10.182  31.944  14.347  1.00  0.00              
ATOM    204  O   PHE    70      -9.025  32.409  14.344  1.00  0.00              
ATOM    205  N   LEU    71     -10.449  30.753  13.969  1.00  0.00              
ATOM    206  CA  LEU    71      -9.366  29.906  13.386  1.00  0.00              
ATOM    207  C   LEU    71      -9.907  29.572  11.967  1.00  0.00              
ATOM    208  O   LEU    71     -11.134  29.371  11.655  1.00  0.00              
ATOM    209  N   ILE    72      -8.912  29.510  11.072  1.00  0.00              
ATOM    210  CA  ILE    72      -9.274  29.252   9.679  1.00  0.00              
ATOM    211  C   ILE    72      -8.561  28.130   8.934  1.00  0.00              
ATOM    212  O   ILE    72      -7.403  27.716   8.923  1.00  0.00              
ATOM    213  N   LEU    73      -9.476  27.640   8.116  1.00  0.00              
ATOM    214  CA  LEU    73      -9.667  26.686   7.058  1.00  0.00              
ATOM    215  C   LEU    73      -8.594  25.603   6.944  1.00  0.00              
ATOM    216  O   LEU    73      -7.875  24.949   6.197  1.00  0.00              
END
