PFRMAT SS 
TARGET T0057 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t57.t98_5.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 4.1488 
METHOD 
MODEL 1 
M C 0.69 
I C 0.68 
N C 0.47 
V E 0.69 
A E 0.79 
V E 0.73 
N E 0.58 
G C 0.51 
Y C 0.49 
G H 0.42 
T H 0.69 
I H 0.78 
G H 0.91 
K H 0.95 
R H 0.94 
V H 0.96 
A H 0.95 
D H 0.89 
A H 0.83 
I H 0.74 
I H 0.49 
K C 0.50 
Q C 0.84 
P C 0.93 
D C 0.82 
M E 0.61 
K E 0.91 
L E 0.97 
V E 0.97 
G E 0.95 
V E 0.89 
A E 0.72 
K C 0.51 
T C 0.78 
S C 0.92 
P C 0.88 
N C 0.59 
Y H 0.73 
E H 0.85 
A H 0.89 
F H 0.93 
I H 0.93 
A H 0.90 
H H 0.88 
R H 0.78 
R C 0.52 
G C 0.76 
I C 0.56 
R E 0.77 
I E 0.90 
Y E 0.90 
V E 0.78 
P C 0.55 
Q C 0.73 
Q C 0.58 
S H 0.55 
I H 0.63 
K H 0.62 
K H 0.59 
F H 0.57 
E H 0.55 
E C 0.51 
S C 0.81 
G C 0.84 
I C 0.53 
P E 0.70 
V E 0.66 
A E 0.50 
G C 0.42 
T C 0.59 
V H 0.88 
E H 0.96 
D H 0.96 
L H 0.94 
I H 0.87 
K H 0.61 
T C 0.62 
S C 0.78 
D C 0.58 
I E 0.85 
V E 0.94 
V E 0.91 
D E 0.78 
T C 0.62 
T C 0.89 
P C 0.79 
N C 0.61 
G C 0.73 
V C 0.79 
G C 0.76 
A C 0.57 
Q C 0.62 
Y C 0.58 
K H 0.48 
P H 0.58 
I H 0.61 
Y H 0.60 
L H 0.64 
Q H 0.61 
L C 0.44 
Q C 0.63 
R C 0.40 
N E 0.65 
A E 0.80 
I E 0.80 
F E 0.67 
Q C 0.51 
G C 0.87 
G C 0.90 
E C 0.75 
K C 0.67 
A C 0.67 
E C 0.51 
V E 0.44 
A E 0.47 
D E 0.46 
I C 0.42 
S C 0.45 
F H 0.56 
S H 0.65 
A H 0.74 
L H 0.74 
C H 0.68 
N H 0.55 
Y H 0.70 
N H 0.79 
E H 0.73 
A H 0.59 
L C 0.50 
G C 0.74 
K C 0.77 
K C 0.59 
Y E 0.79 
I E 0.95 
R E 0.97 
V E 0.98 
V E 0.96 
S E 0.89 
C E 0.55 
N C 0.78 
T C 0.59 
T H 0.46 
A H 0.44 
L H 0.61 
L H 0.72 
R H 0.71 
T H 0.72 
I H 0.80 
C H 0.73 
T H 0.71 
V H 0.70 
N H 0.48 
K H 0.52 
V C 0.47 
S C 0.59 
K C 0.49 
V H 0.46 
E H 0.50 
K H 0.53 
V H 0.52 
R H 0.42 
A E 0.49 
T E 0.59 
I E 0.63 
V E 0.50 
R E 0.40 
R C 0.36 
A C 0.54 
A C 0.77 
D C 0.89 
Q C 0.80 
K C 0.53 
E H 0.58 
V C 0.52 
K C 0.57 
K C 0.65 
G C 0.87 
P C 0.69 
I H 0.48 
N H 0.50 
S H 0.51 
L C 0.47 
V C 0.71 
P C 0.88 
D C 0.94 
P C 0.91 
A C 0.82 
T C 0.78 
V C 0.78 
P C 0.75 
S H 0.58 
H C 0.51 
H C 0.76 
A C 0.82 
K C 0.72 
D C 0.52 
V H 0.68 
N H 0.63 
S H 0.53 
V H 0.50 
I H 0.40 
R C 0.41 
N C 0.41 
L C 0.40 
D C 0.44 
I H 0.41 
A H 0.36 
T E 0.35 
M E 0.45 
A E 0.59 
V E 0.61 
I E 0.50 
A C 0.57 
P C 0.55 
T H 0.59 
T H 0.76 
L H 0.74 
M H 0.64 
H H 0.47 
M C 0.52 
H C 0.58 
F C 0.51 
I E 0.66 
N E 0.85 
I E 0.89 
T E 0.88 
L E 0.75 
K C 0.56 
D C 0.72 
K C 0.74 
V C 0.72 
E C 0.71 
K H 0.59 
K H 0.84 
D H 0.89 
I H 0.93 
L H 0.94 
S H 0.93 
V H 0.91 
L H 0.80 
E C 0.48 
N C 0.69 
T C 0.94 
P C 0.90 
R E 0.66 
I E 0.95 
V E 0.98 
L E 0.98 
I E 0.93 
S E 0.71 
S C 0.58 
K C 0.71 
Y C 0.83 
D C 0.88 
A C 0.65 
E C 0.57 
A C 0.54 
T H 0.76 
A H 0.93 
E H 0.95 
L H 0.97 
V H 0.99 
E H 0.98 
V H 0.98 
A H 0.98 
R H 0.98 
D H 0.95 
L H 0.93 
K H 0.92 
R H 0.89 
D H 0.74 
R H 0.67 
N C 0.54 
D H 0.56 
I H 0.59 
P H 0.47 
E H 0.38 
V E 0.50 
M E 0.64 
I E 0.70 
F E 0.61 
S E 0.44 
D C 0.55 
S C 0.62 
I C 0.54 
Y C 0.49 
V C 0.46 
K C 0.57 
D C 0.71 
D C 0.75 
E C 0.45 
V E 0.44 
M E 0.59 
L E 0.63 
M E 0.57 
Y E 0.62 
A E 0.54 
V C 0.37 
H C 0.58 
Q C 0.52 
E C 0.53 
S C 0.65 
I C 0.58 
V C 0.61 
V C 0.64 
P H 0.47 
E H 0.76 
N H 0.78 
I H 0.94 
D H 0.96 
A H 0.95 
I H 0.96 
R H 0.96 
A H 0.93 
S H 0.92 
M H 0.91 
K H 0.84 
L H 0.76 
M H 0.64 
S C 0.65 
A C 0.68 
E C 0.52 
D C 0.47 
S H 0.55 
M H 0.71 
R H 0.64 
I H 0.45 
T C 0.56 
N C 0.62 
E C 0.55 
S C 0.48 
L C 0.47 
G C 0.47 
I E 0.41 
L E 0.41 
K E 0.37 
G E 0.35 
Y C 0.39 
L C 0.43 
I C 0.54 
END 
