REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0056AL212_4 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : BRYANT 
REMARK  ---------------------------------------------------------- 
TARGET T0056  
REMARK =======================================================================  
AUTHOR 2738-1421-4442  
REMARK This prediction was prepared by Anna Panchenko, Aron Marchler-Bauer,  
REMARK and Steve Bryant, NCBI.  
REMARK =======================================================================  
METHOD Predictions were made with the potential and alignment model used in  
METHOD CASP1 and CASP2 predictions, as described by Madej et al. in Proteins  
METHOD 23:356-369, 1995. Convergence control has been added to the Gibbs-  
METHOD Sampling alignment model. In addition to contact-based threading  
METHOD potentials, PSSMs summarizing sequence conservation in the family  
METHOD represented by the template structure are used to score threading  
METHOD alignments. Threading "cores" summarizing the conserved substructure  
METHOD in the templates used for models below have been based on structure  
METHOD superpositions generated by VAST (Gibrat et al., Curr Opin Struct  
METHOD Biol 1996 Jun;6(3):377-385 ).  
METHOD The alignments have been calculated with the Gibbs Sampling threading  
METHOD engine. No single template has been identified in threading database  
METHOD searches with unambiguous scores/p-values. We therefore submit "NONE"  
METHOD as model no. 1, indicating that the automated search methods have not  
METHOD indicated a clearly favored template. Additional models represent   
METHOD top-scoring hits from threading database searches, which  
METHOD have been calculated using PSSM-based scoring, weight 0.5 (models 2  
METHOD and 3), as well as with the contact based threader (models 4 and 5).  
REMARK =======================================================================  
MODEL  4  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1pjr 
ATOM      1  N   GLY    38      75.617  -0.166   1.786  1.00  0.00              
ATOM      2  CA  GLY    38      76.996   0.311   1.919  1.00  0.00              
ATOM      3  C   GLY    38      77.032   1.812   2.224  1.00  0.00              
ATOM      4  O   GLY    38      78.000   2.492   1.909  1.00  0.00              
ATOM      5  N   GLY    39      76.010   2.386   2.876  1.00  0.00              
ATOM      6  CA  GLY    39      76.002   3.805   3.240  1.00  0.00              
ATOM      7  C   GLY    39      77.240   4.246   4.038  1.00  0.00              
ATOM      8  O   GLY    39      77.855   3.424   4.754  1.00  0.00              
ATOM      9  N   LEU    40      77.618   5.516   3.958  1.00  0.00              
ATOM     10  CA  LEU    40      78.725   6.073   4.718  1.00  0.00              
ATOM     11  C   LEU    40      78.272   6.900   5.926  1.00  0.00              
ATOM     12  O   LEU    40      77.186   7.498   5.902  1.00  0.00              
ATOM     13  N   MET    41      79.056   6.942   7.012  1.00  0.00              
ATOM     14  CA  MET    41      78.642   7.660   8.210  1.00  0.00              
ATOM     15  C   MET    41      79.517   8.884   8.205  1.00  0.00              
ATOM     16  O   MET    41      80.724   8.804   7.980  1.00  0.00              
ATOM     17  N   LEU    42      78.874  10.018   8.357  1.00  0.00              
ATOM     18  CA  LEU    42      79.546  11.298   8.354  1.00  0.00              
ATOM     19  C   LEU    42      80.377  11.538   9.600  1.00  0.00              
ATOM     20  O   LEU    42      79.848  11.373  10.703  1.00  0.00              
ATOM     21  N   ASP    43      81.645  11.920   9.470  1.00  0.00              
ATOM     22  CA  ASP    43      82.471  12.380  10.588  1.00  0.00              
ATOM     23  C   ASP    43      81.999  13.820  10.874  1.00  0.00              
ATOM     24  O   ASP    43      81.510  14.524   9.970  1.00  0.00              
ATOM     25  N   ASN    44      82.095  14.346  12.112  1.00  0.00              
ATOM     26  CA  ASN    44      81.722  15.711  12.461  1.00  0.00              
ATOM     27  C   ASN    44      82.312  16.835  11.621  1.00  0.00              
ATOM     28  O   ASN    44      81.869  17.982  11.754  1.00  0.00              
ATOM     29  N   GLU    45      83.313  16.586  10.788  1.00  0.00              
ATOM     30  CA  GLU    45      83.897  17.609   9.943  1.00  0.00              
ATOM     31  C   GLU    45      83.232  17.571   8.577  1.00  0.00              
ATOM     32  O   GLU    45      82.990  18.626   7.978  1.00  0.00              
ATOM     33  N   ARG    46      82.914  16.381   8.064  1.00  0.00              
ATOM     34  CA  ARG    46      82.130  16.226   6.845  1.00  0.00              
ATOM     35  C   ARG    46      80.813  16.936   7.083  1.00  0.00              
ATOM     36  O   ARG    46      80.364  17.780   6.297  1.00  0.00              
ATOM     37  N   TRP    47      80.250  16.621   8.253  1.00  0.00              
ATOM     38  CA  TRP    47      78.985  17.161   8.706  1.00  0.00              
ATOM     39  C   TRP    47      78.999  18.686   8.645  1.00  0.00              
ATOM     40  O   TRP    47      78.071  19.342   8.163  1.00  0.00              
ATOM     41  N   ASP    48      80.133  19.254   9.053  1.00  0.00              
ATOM     42  CA  ASP    48      80.354  20.682   9.025  1.00  0.00              
ATOM     43  C   ASP    48      80.579  21.189   7.602  1.00  0.00              
ATOM     44  O   ASP    48      80.210  22.323   7.293  1.00  0.00              
ATOM     45  N   ASP    49      81.194  20.443   6.680  1.00  0.00              
ATOM     46  CA  ASP    49      81.364  20.899   5.307  1.00  0.00              
ATOM     47  C   ASP    49      80.015  21.044   4.642  1.00  0.00              
ATOM     48  O   ASP    49      79.715  22.138   4.152  1.00  0.00              
ATOM     49  N   VAL    50      79.193  19.989   4.727  1.00  0.00              
ATOM     50  CA  VAL    50      77.830  19.958   4.191  1.00  0.00              
ATOM     51  C   VAL    50      77.046  21.132   4.747  1.00  0.00              
ATOM     52  O   VAL    50      76.400  21.863   3.990  1.00  0.00              
ATOM     53  N   ALA    51      77.155  21.342   6.057  1.00  0.00              
ATOM     54  CA  ALA    51      76.482  22.438   6.718  1.00  0.00              
ATOM     55  C   ALA    51      76.905  23.797   6.194  1.00  0.00              
ATOM     56  O   ALA    51      76.039  24.622   5.878  1.00  0.00              
ATOM     57  N   GLU    52      78.216  24.042   6.034  1.00  0.00              
ATOM     58  CA  GLU    52      78.693  25.330   5.544  1.00  0.00              
ATOM     59  C   GLU    52      78.238  25.581   4.129  1.00  0.00              
ATOM     60  O   GLU    52      77.764  26.675   3.841  1.00  0.00              
ATOM     61  N   ARG    53      78.291  24.571   3.265  1.00  0.00              
ATOM     62  CA  ARG    53      77.848  24.701   1.890  1.00  0.00              
ATOM     63  C   ARG    53      76.358  25.052   1.830  1.00  0.00              
ATOM     64  O   ARG    53      76.029  26.012   1.143  1.00  0.00              
ATOM     65  N   VAL    54      75.450  24.432   2.596  1.00  0.00              
ATOM     66  CA  VAL    54      74.025  24.791   2.606  1.00  0.00              
ATOM     67  C   VAL    54      73.889  26.243   3.011  1.00  0.00              
ATOM     68  O   VAL    54      73.117  27.013   2.440  1.00  0.00              
ATOM     69  N   VAL    55      74.693  26.609   3.999  1.00  0.00              
ATOM     70  CA  VAL    55      74.689  27.957   4.480  1.00  0.00              
ATOM     71  C   VAL    55      75.174  28.945   3.435  1.00  0.00              
ATOM     72  O   VAL    55      74.492  29.943   3.210  1.00  0.00              
ATOM     73  N   ALA    56      76.271  28.647   2.732  1.00  0.00              
ATOM     74  CA  ALA    56      76.829  29.518   1.717  1.00  0.00              
ATOM     75  C   ALA    56      75.751  29.663   0.653  1.00  0.00              
ATOM     76  O   ALA    56      75.391  30.786   0.322  1.00  0.00              
ATOM     77  N   ARG    65      78.636  25.301  13.578  1.00  0.00              
ATOM     78  CA  ARG    65      78.749  24.401  14.728  1.00  0.00              
ATOM     79  C   ARG    65      77.561  24.576  15.670  1.00  0.00              
ATOM     80  O   ARG    65      77.047  23.571  16.177  1.00  0.00              
ATOM     81  N   HIS    66      77.033  25.783  15.884  1.00  0.00              
ATOM     82  CA  HIS    66      75.850  25.992  16.708  1.00  0.00              
ATOM     83  C   HIS    66      74.621  25.329  16.073  1.00  0.00              
ATOM     84  O   HIS    66      73.864  24.651  16.776  1.00  0.00              
ATOM     85  N   ILE    67      74.390  25.491  14.755  1.00  0.00              
ATOM     86  CA  ILE    67      73.213  24.916  14.098  1.00  0.00              
ATOM     87  C   ILE    67      73.214  23.382  14.069  1.00  0.00              
ATOM     88  O   ILE    67      72.203  22.783  14.468  1.00  0.00              
ATOM     89  N   PHE    68      74.272  22.665  13.665  1.00  0.00              
ATOM     90  CA  PHE    68      74.134  21.222  13.673  1.00  0.00              
ATOM     91  C   PHE    68      74.090  20.653  15.083  1.00  0.00              
ATOM     92  O   PHE    68      73.648  19.519  15.290  1.00  0.00              
ATOM     93  N   THR    69      74.465  21.474  16.066  1.00  0.00              
ATOM     94  CA  THR    69      74.259  21.173  17.471  1.00  0.00              
ATOM     95  C   THR    69      72.756  21.151  17.725  1.00  0.00              
ATOM     96  O   THR    69      72.254  20.190  18.315  1.00  0.00              
ATOM     97  N   GLU    70      71.972  22.132  17.263  1.00  0.00              
ATOM     98  CA  GLU    70      70.530  22.140  17.473  1.00  0.00              
ATOM     99  C   GLU    70      69.859  20.975  16.767  1.00  0.00              
ATOM    100  O   GLU    70      68.922  20.356  17.289  1.00  0.00              
ATOM    101  N   MET    71      70.376  20.639  15.586  1.00  0.00              
ATOM    102  CA  MET    71      69.893  19.520  14.798  1.00  0.00              
ATOM    103  C   MET    71      70.132  18.258  15.606  1.00  0.00              
ATOM    104  O   MET    71      69.175  17.512  15.815  1.00  0.00              
ATOM    105  N   ALA    72      71.335  18.055  16.143  1.00  0.00              
ATOM    106  CA  ALA    72      71.652  16.867  16.910  1.00  0.00              
ATOM    107  C   ALA    72      70.672  16.659  18.061  1.00  0.00              
ATOM    108  O   ALA    72      70.057  15.595  18.233  1.00  0.00              
ATOM    109  N   ARG    73      70.392  17.721  18.809  1.00  0.00              
ATOM    110  CA  ARG    73      69.438  17.657  19.903  1.00  0.00              
ATOM    111  C   ARG    73      68.022  17.321  19.445  1.00  0.00              
ATOM    112  O   ARG    73      67.249  16.683  20.174  1.00  0.00              
ATOM    113  N   LEU    74      67.645  17.745  18.240  1.00  0.00              
ATOM    114  CA  LEU    74      66.339  17.415  17.690  1.00  0.00              
ATOM    115  C   LEU    74      66.304  15.922  17.366  1.00  0.00              
ATOM    116  O   LEU    74      65.378  15.232  17.791  1.00  0.00              
ATOM    117  N   GLN    75      67.319  15.348  16.707  1.00  0.00              
ATOM    118  CA  GLN    75      67.366  13.932  16.364  1.00  0.00              
ATOM    119  C   GLN    75      67.434  13.055  17.609  1.00  0.00              
ATOM    120  O   GLN    75      66.788  12.009  17.695  1.00  0.00              
ATOM    121  N   ILE    81      62.971  14.083  16.722  1.00  0.00              
ATOM    122  CA  ILE    81      62.197  15.093  16.037  1.00  0.00              
ATOM    123  C   ILE    81      62.748  15.193  14.633  1.00  0.00              
ATOM    124  O   ILE    81      63.856  15.706  14.468  1.00  0.00              
ATOM    125  N   ASP    82      62.051  14.665  13.613  1.00  0.00              
ATOM    126  CA  ASP    82      62.437  14.781  12.204  1.00  0.00              
ATOM    127  C   ASP    82      62.102  16.165  11.622  1.00  0.00              
ATOM    128  O   ASP    82      61.234  16.825  12.225  1.00  0.00              
ATOM    129  N   LEU    83      62.662  16.670  10.490  1.00  0.00              
ATOM    130  CA  LEU    83      62.478  18.040   9.993  1.00  0.00              
ATOM    131  C   LEU    83      61.050  18.566  10.023  1.00  0.00              
ATOM    132  O   LEU    83      60.791  19.624  10.593  1.00  0.00              
ATOM    133  N   ILE    84      60.131  17.733   9.547  1.00  0.00              
ATOM    134  CA  ILE    84      58.698  17.977   9.458  1.00  0.00              
ATOM    135  C   ILE    84      58.113  18.357  10.803  1.00  0.00              
ATOM    136  O   ILE    84      57.378  19.334  10.888  1.00  0.00              
ATOM    137  N   THR    85      58.460  17.640  11.874  1.00  0.00              
ATOM    138  CA  THR    85      57.968  17.903  13.227  1.00  0.00              
ATOM    139  C   THR    85      58.598  19.134  13.853  1.00  0.00              
ATOM    140  O   THR    85      57.961  19.859  14.632  1.00  0.00              
ATOM    141  N   LEU    86      59.897  19.252  13.589  1.00  0.00              
ATOM    142  CA  LEU    86      60.708  20.314  14.119  1.00  0.00              
ATOM    143  C   LEU    86      60.183  21.635  13.604  1.00  0.00              
ATOM    144  O   LEU    86      59.908  22.518  14.406  1.00  0.00              
ATOM    145  N   ALA    87      59.929  21.771  12.303  1.00  0.00              
ATOM    146  CA  ALA    87      59.442  23.004  11.694  1.00  0.00              
ATOM    147  C   ALA    87      58.041  23.428  12.115  1.00  0.00              
ATOM    148  O   ALA    87      57.524  24.451  11.668  1.00  0.00              
ATOM    149  N   GLU    88      57.440  22.659  13.004  1.00  0.00              
ATOM    150  CA  GLU    88      56.077  22.815  13.430  1.00  0.00              
ATOM    151  C   GLU    88      56.108  22.901  14.957  1.00  0.00              
ATOM    152  O   GLU    88      55.265  22.303  15.651  1.00  0.00              
ATOM    153  N   LEU    96      63.126  28.943  12.135  1.00  0.00              
ATOM    154  CA  LEU    96      62.627  28.541  10.834  1.00  0.00              
ATOM    155  C   LEU    96      63.828  28.439   9.920  1.00  0.00              
ATOM    156  O   LEU    96      63.940  27.410   9.262  1.00  0.00              
ATOM    157  N   ASP    97      64.772  29.379   9.871  1.00  0.00              
ATOM    158  CA  ASP    97      65.950  29.249   9.006  1.00  0.00              
ATOM    159  C   ASP    97      66.708  27.980   9.389  1.00  0.00              
ATOM    160  O   ASP    97      67.371  27.338   8.567  1.00  0.00              
ATOM    161  N   SER    98      66.596  27.633  10.674  1.00  0.00              
ATOM    162  CA  SER    98      67.129  26.384  11.169  1.00  0.00              
ATOM    163  C   SER    98      66.260  25.242  10.655  1.00  0.00              
ATOM    164  O   SER    98      66.859  24.338  10.090  1.00  0.00              
ATOM    165  N   VAL    99      64.927  25.137  10.691  1.00  0.00              
ATOM    166  CA  VAL    99      64.259  23.986  10.081  1.00  0.00              
ATOM    167  C   VAL    99      64.299  23.977   8.563  1.00  0.00              
ATOM    168  O   VAL    99      63.895  23.041   7.879  1.00  0.00              
ATOM    169  N   GLY   100      64.817  25.081   8.056  1.00  0.00              
ATOM    170  CA  GLY   100      65.061  25.273   6.659  1.00  0.00              
ATOM    171  C   GLY   100      66.358  24.562   6.355  1.00  0.00              
ATOM    172  O   GLY   100      66.419  23.708   5.464  1.00  0.00              
ATOM    173  N   GLY   101      67.424  24.919   7.086  1.00  0.00              
ATOM    174  CA  GLY   101      68.695  24.257   6.900  1.00  0.00              
ATOM    175  C   GLY   101      68.607  22.811   7.419  1.00  0.00              
ATOM    176  O   GLY   101      69.319  21.958   6.894  1.00  0.00              
ATOM    177  N   PHE   102      67.720  22.423   8.350  1.00  0.00              
ATOM    178  CA  PHE   102      67.610  21.039   8.806  1.00  0.00              
ATOM    179  C   PHE   102      66.967  20.197   7.697  1.00  0.00              
ATOM    180  O   PHE   102      67.496  19.144   7.306  1.00  0.00              
ATOM    181  N   ALA   103      65.869  20.702   7.124  1.00  0.00              
ATOM    182  CA  ALA   103      65.159  20.043   6.040  1.00  0.00              
ATOM    183  C   ALA   103      66.104  19.779   4.871  1.00  0.00              
ATOM    184  O   ALA   103      66.184  18.642   4.406  1.00  0.00              
ATOM    185  N   TYR   104      66.901  20.755   4.422  1.00  0.00              
ATOM    186  CA  TYR   104      67.841  20.577   3.322  1.00  0.00              
ATOM    187  C   TYR   104      69.008  19.674   3.706  1.00  0.00              
ATOM    188  O   TYR   104      69.391  18.775   2.945  1.00  0.00              
ATOM    189  N   LEU   105      69.569  19.829   4.907  1.00  0.00              
ATOM    190  CA  LEU   105      70.677  19.008   5.376  1.00  0.00              
ATOM    191  C   LEU   105      70.345  17.521   5.277  1.00  0.00              
ATOM    192  O   LEU   105      71.154  16.733   4.775  1.00  0.00              
ATOM    193  N   ALA   106      69.127  17.152   5.682  1.00  0.00              
ATOM    194  CA  ALA   106      68.689  15.779   5.574  1.00  0.00              
ATOM    195  C   ALA   106      68.670  15.314   4.148  1.00  0.00              
ATOM    196  O   ALA   106      69.222  14.248   3.846  1.00  0.00              
ATOM    197  N   GLU   107      68.098  16.136   3.260  1.00  0.00              
ATOM    198  CA  GLU   107      67.990  15.818   1.834  1.00  0.00              
ATOM    199  C   GLU   107      69.337  15.561   1.195  1.00  0.00              
ATOM    200  O   GLU   107      69.559  14.589   0.457  1.00  0.00              
ATOM    201  N   LEU   108      70.270  16.443   1.512  1.00  0.00              
ATOM    202  CA  LEU   108      71.597  16.294   0.999  1.00  0.00              
ATOM    203  C   LEU   108      72.196  14.977   1.476  1.00  0.00              
ATOM    204  O   LEU   108      72.863  14.292   0.704  1.00  0.00              
ATOM    205  N   ALA   115      73.402   8.992   0.156  1.00  0.00              
ATOM    206  CA  ALA   115      73.401   7.767   0.956  1.00  0.00              
ATOM    207  C   ALA   115      74.420   7.794   2.085  1.00  0.00              
ATOM    208  O   ALA   115      75.348   6.998   2.217  1.00  0.00              
ATOM    209  N   ALA   116      74.181   8.798   2.903  1.00  0.00              
ATOM    210  CA  ALA   116      75.028   9.132   4.005  1.00  0.00              
ATOM    211  C   ALA   116      74.158   9.238   5.239  1.00  0.00              
ATOM    212  O   ALA   116      72.992   9.650   5.104  1.00  0.00              
ATOM    213  N   ASN   117      74.660   8.830   6.419  1.00  0.00              
ATOM    214  CA  ASN   117      73.932   9.008   7.682  1.00  0.00              
ATOM    215  C   ASN   117      74.899   9.699   8.629  1.00  0.00              
ATOM    216  O   ASN   117      76.110   9.439   8.530  1.00  0.00              
ATOM    217  N   ILE   118      74.508  10.624   9.492  1.00  0.00              
ATOM    218  CA  ILE   118      75.473  11.119  10.460  1.00  0.00              
ATOM    219  C   ILE   118      75.328  10.244  11.706  1.00  0.00              
ATOM    220  O   ILE   118      74.546   9.284  11.703  1.00  0.00              
ATOM    221  N   SER   119      76.012  10.507  12.813  1.00  0.00              
ATOM    222  CA  SER   119      75.956   9.618  13.970  1.00  0.00              
ATOM    223  C   SER   119      74.613   9.583  14.650  1.00  0.00              
ATOM    224  O   SER   119      74.204   8.492  15.079  1.00  0.00              
ATOM    225  N   ALA   120      73.899  10.716  14.719  1.00  0.00              
ATOM    226  CA  ALA   120      72.598  10.754  15.377  1.00  0.00              
ATOM    227  C   ALA   120      71.531  10.075  14.544  1.00  0.00              
ATOM    228  O   ALA   120      70.480   9.670  15.069  1.00  0.00              
END
