PFRMAT SS 
TARGET T0055 
AUTHOR 3403-1625-5531 
METHOD New Joint Method including SSthread 
METHOD (Prediction of protein Secondary Structure using Threading) 
METHOD K. Nishikawa and T. Noguchi:  
METHOD Methods in Enzymology, Vol.202, pp.31-44 (1991).  
METHOD M. Ito, Y. Matsuo and K. Nishikawa:  
METHOD Comput. Appl. Biosci. Vol.13, pp.415-423 (1997). 
MODEL  1 
M C 1.0 
D C 1.0 
Y E 0.6 
E E 0.8 
I E 1.0 
L E 0.6 
F E 0.6 
S C 0.8 
D C 0.8 
E C 0.8 
T C 0.8 
M C 0.8 
N C 1.0 
Y H 0.1 
A H 0.1 
D H 0.1 
A H 0.1 
G H 0.1 
T H 0.1 
Y H 0.1 
C H 0.1 
Q H 0.1 
S C 0.8 
R C 0.8 
G C 0.4 
M C 0.4 
A E 0.8 
L E 0.8 
V E 0.6 
S C 0.4 
S C 0.8 
A C 0.8 
M C 0.8 
R C 0.8 
D C 0.8 
S C 0.6 
T H 0.6 
M H 0.8 
V H 0.8 
K H 0.8 
A H 0.8 
I H 0.6 
L H 0.6 
A H 0.8 
F H 0.8 
T H 0.8 
E H 0.6 
V C 0.6 
K C 1.0 
G C 1.0 
H C 1.0 
D C 0.8 
Y E 0.6 
W E 0.6 
V E 0.6 
G C 1.0 
A C 1.0 
D C 1.0 
N C 1.0 
L C 1.0 
Q C 1.0 
D C 1.0 
G C 1.0 
A C 1.0 
Y E 0.2 
N E 0.2 
F E 0.6 
L E 0.6 
W E 0.6 
N C 0.8 
D C 1.0 
G C 1.0 
V C 0.8 
S C 0.8 
L C 0.8 
P C 1.0 
T C 1.0 
D C 1.0 
S C 1.0 
D C 1.0 
L C 1.0 
W C 0.8 
S C 1.0 
P C 1.0 
N C 1.0 
E C 1.0 
P C 1.0 
S C 1.0 
N C 1.0 
P C 1.0 
Q C 1.0 
S C 1.0 
W E 0.6 
Q E 0.8 
L E 0.8 
C E 0.8 
V E 0.8 
Q E 0.8 
I E 0.2 
W C 0.2 
S C 0.8 
K C 0.8 
Y C 0.8 
N C 0.8 
L C 0.6 
L C 0.6 
D C 0.6 
D C 0.6 
V C 0.8 
G C 0.8 
C C 0.8 
G C 0.8 
G C 0.8 
A C 0.8 
R E 0.1 
R E 0.6 
V E 0.8 
I E 0.8 
C E 0.8 
E E 0.1 
K C 1.0 
E C 1.0 
L C 1.0 
D C 1.0 
D C 1.0 
END 
