PFRMAT TS 
TARGET T0054 
AUTHOR 1486-5617-7589 
REMARK NO SIGNIFICANT HIT WAS IDENTIFIED BY THREADER2 
REMARK ZSCORES WERE LESS THAN 3.0 AND DECREASED ON SEQUENCE SHUFFLING 
REMARK WEIGHTING THE ALIGNMENT BY SECONDARY STRUCTURE PREDICTION  
REMARK GAVE NO IMPROVEMENT 
METHOD SECONDARY STRUCTURE PREDICTED AS A CONSENSUS FROM PHD AND DSC 
METHOD THREADER2 RUNS WITH AND WITHOUT DOMAIN SEARCHING USING  
METHOD DEFAULT PARAMETERS AND A CATH DOMAIN BASED DATABASE  
METHOD INITIAL HITS WERE CHECKED BY SEQUENCE SHUFFLING 
METHOD THREADER2 RUNS WITH SECONDARY STRUCTURE CONSTRAINTS  
METHOD (CONFIDENCE LEVEL 0.7) WERE ALSO ATTEMPTED 
MODEL  1 
PARENT NONE 
TER 
END  
