REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0054AL215_1_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : ZHU-JUN 
REMARK  ---------------------------------------------------------- 
TARGET     T0054  
AUTHOR     4070-8855-4894  
METHOD     The target is compared with PDB25 database (U.Hobohm et al., 1992).  
METHOD     For each structure in PDB25, a model is built in the following way:  
METHOD     the sequence (query) is compared with NR database using transitive   
METHOD     BLAST (Neuwald et al. 1997). Similar sequences are collected and   
METHOD     purged at score 150.  Those sequences are aligned with query   
METHOD     sequence using Bayesian aligner (Zhu et al., 1998) and a   
METHOD     profile-like model is built (Lawrence et al. 1993; Gribskov et al.,  
METHOD     1987; unpublished result by Jun Zhu, Roland Luthy and Charlse E.   
METHOD     Lawrence).  Then, the target file is compared with the models   
METHOD     derived from PDB25.  
MODEL     1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 2nac_A 
ATOM      1  N   GLY    29      23.399  22.035  83.549  1.00  0.00              
ATOM      2  CA  GLY    29      24.693  22.379  83.044  1.00  0.00              
ATOM      3  C   GLY    29      25.743  22.572  84.171  1.00  0.00              
ATOM      4  O   GLY    29      26.900  22.244  84.005  1.00  0.00              
ATOM      5  N   LYS    30      25.311  23.068  85.294  1.00  0.00              
ATOM      6  CA  LYS    30      26.212  23.367  86.423  1.00  0.00              
ATOM      7  C   LYS    30      27.121  22.235  86.814  1.00  0.00              
ATOM      8  O   LYS    30      28.284  22.495  87.184  1.00  0.00              
ATOM      9  N   PRO    31      26.740  20.995  86.786  1.00  0.00              
ATOM     10  CA  PRO    31      27.514  19.831  87.083  1.00  0.00              
ATOM     11  C   PRO    31      27.680  18.785  85.978  1.00  0.00              
ATOM     12  O   PRO    31      28.055  17.631  86.184  1.00  0.00              
ATOM     13  N   VAL    32      27.347  19.165  84.705  1.00  0.00              
ATOM     14  CA  VAL    32      27.535  18.184  83.657  1.00  0.00              
ATOM     15  C   VAL    32      29.010  18.124  83.283  1.00  0.00              
ATOM     16  O   VAL    32      29.694  19.138  83.185  1.00  0.00              
ATOM     17  N   ASP    33      29.510  16.938  83.003  1.00  0.00              
ATOM     18  CA  ASP    33      30.866  16.705  82.574  1.00  0.00              
ATOM     19  C   ASP    33      30.958  16.889  81.045  1.00  0.00              
ATOM     20  O   ASP    33      31.951  17.366  80.523  1.00  0.00              
ATOM     21  N   GLY    34      29.876  16.462  80.351  1.00  0.00              
ATOM     22  CA  GLY    34      29.872  16.565  78.865  1.00  0.00              
ATOM     23  C   GLY    34      28.568  17.201  78.410  1.00  0.00              
ATOM     24  O   GLY    34      27.534  16.932  79.037  1.00  0.00              
ATOM     25  N   TYR    35      28.643  18.033  77.417  1.00  0.00              
ATOM     26  CA  TYR    35      27.435  18.675  76.847  1.00  0.00              
ATOM     27  C   TYR    35      27.499  18.361  75.347  1.00  0.00              
ATOM     28  O   TYR    35      28.516  18.472  74.702  1.00  0.00              
ATOM     29  N   GLU    36      26.374  17.876  74.872  1.00  0.00              
ATOM     30  CA  GLU    36      26.207  17.516  73.448  1.00  0.00              
ATOM     31  C   GLU    36      25.012  18.268  72.871  1.00  0.00              
ATOM     32  O   GLU    36      23.971  18.353  73.537  1.00  0.00              
ATOM     33  N   VAL    37      25.151  18.843  71.688  1.00  0.00              
ATOM     34  CA  VAL    37      23.994  19.490  71.038  1.00  0.00              
ATOM     35  C   VAL    37      24.267  19.460  69.529  1.00  0.00              
ATOM     36  O   VAL    37      25.379  19.268  69.098  1.00  0.00              
ATOM     37  N   ASN    38      23.216  19.658  68.703  1.00  0.00              
ATOM     38  CA  ASN    38      23.356  19.679  67.281  1.00  0.00              
ATOM     39  C   ASN    38      23.168  21.113  66.809  1.00  0.00              
ATOM     40  O   ASN    38      22.430  21.868  67.419  1.00  0.00              
ATOM     41  N   ARG    39      23.763  21.509  65.708  1.00  0.00              
ATOM     42  CA  ARG    39      23.624  22.835  65.126  1.00  0.00              
ATOM     43  C   ARG    39      22.172  23.201  64.753  1.00  0.00              
ATOM     44  O   ARG    39      21.788  24.370  64.696  1.00  0.00              
ATOM     45  N   ILE    40      21.320  22.197  64.569  1.00  0.00              
ATOM     46  CA  ILE    40      19.900  22.372  64.205  1.00  0.00              
ATOM     47  C   ILE    40      19.058  22.732  65.374  1.00  0.00              
ATOM     48  O   ILE    40      17.939  23.205  65.206  1.00  0.00              
ATOM     49  N   VAL    41      19.533  22.544  66.617  1.00  0.00              
ATOM     50  CA  VAL    41      18.829  22.870  67.838  1.00  0.00              
ATOM     51  C   VAL    41      19.950  23.033  68.928  1.00  0.00              
ATOM     52  O   VAL    41      20.112  22.121  69.741  1.00  0.00              
ATOM     53  N   GLY    42      20.723  24.095  68.783  1.00  0.00              
ATOM     54  CA  GLY    42      21.934  24.306  69.578  1.00  0.00              
ATOM     55  C   GLY    42      21.822  24.857  70.987  1.00  0.00              
ATOM     56  O   GLY    42      21.093  25.773  71.208  1.00  0.00              
ATOM     57  N   THR    43      22.496  24.181  71.894  1.00  0.00              
ATOM     58  CA  THR    43      22.513  24.657  73.312  1.00  0.00              
ATOM     59  C   THR    43      23.727  25.618  73.344  1.00  0.00              
ATOM     60  O   THR    43      24.893  25.153  73.289  1.00  0.00              
ATOM     61  N   TYR    44      23.565  26.909  73.363  1.00  0.00              
ATOM     62  CA  TYR    44      24.632  27.882  73.364  1.00  0.00              
ATOM     63  C   TYR    44      25.493  27.875  74.656  1.00  0.00              
ATOM     64  O   TYR    44      24.995  27.926  75.754  1.00  0.00              
ATOM     65  N   GLU    45      26.764  27.795  74.385  1.00  0.00              
ATOM     66  CA  GLU    45      27.773  27.779  75.450  1.00  0.00              
ATOM     67  C   GLU    45      28.488  29.107  75.385  1.00  0.00              
ATOM     68  O   GLU    45      29.465  29.414  74.759  1.00  0.00              
ATOM     69  N   LEU    46      27.776  30.046  75.971  1.00  0.00              
ATOM     70  CA  LEU    46      28.216  31.451  76.105  1.00  0.00              
ATOM     71  C   LEU    46      29.268  31.440  77.242  1.00  0.00              
ATOM     72  O   LEU    46      29.416  30.516  78.030  1.00  0.00              
ATOM     73  N   ALA    47      29.992  32.520  77.315  1.00  0.00              
ATOM     74  CA  ALA    47      31.025  32.721  78.371  1.00  0.00              
ATOM     75  C   ALA    47      30.467  32.522  79.754  1.00  0.00              
ATOM     76  O   ALA    47      30.997  31.811  80.604  1.00  0.00              
ATOM     77  N   GLU    48      29.312  33.107  80.029  1.00  0.00              
ATOM     78  CA  GLU    48      28.577  33.015  81.257  1.00  0.00              
ATOM     79  C   GLU    48      28.159  31.586  81.535  1.00  0.00              
ATOM     80  O   GLU    48      28.230  31.108  82.681  1.00  0.00              
ATOM     81  N   SER    49      27.707  30.840  80.501  1.00  0.00              
ATOM     82  CA  SER    49      27.344  29.458  80.836  1.00  0.00              
ATOM     83  C   SER    49      28.551  28.590  81.093  1.00  0.00              
ATOM     84  O   SER    49      28.469  27.670  81.880  1.00  0.00              
ATOM     85  N   LEU    50      29.640  28.847  80.332  1.00  0.00              
ATOM     86  CA  LEU    50      30.872  28.066  80.510  1.00  0.00              
ATOM     87  C   LEU    50      31.433  28.310  81.950  1.00  0.00              
ATOM     88  O   LEU    50      31.818  27.356  82.629  1.00  0.00              
ATOM     89  N   LEU    51      31.374  29.547  82.404  1.00  0.00              
ATOM     90  CA  LEU    51      31.800  29.962  83.726  1.00  0.00              
ATOM     91  C   LEU    51      31.002  29.226  84.818  1.00  0.00              
ATOM     92  O   LEU    51      31.597  28.775  85.806  1.00  0.00              
ATOM     93  N   LYS    52      29.695  29.059  84.601  1.00  0.00              
ATOM     94  CA  LYS    52      28.894  28.330  85.548  1.00  0.00              
ATOM     95  C   LYS    52      29.040  26.811  85.489  1.00  0.00              
ATOM     96  O   LYS    52      28.652  26.053  86.404  1.00  0.00              
ATOM     97  N   ALA    53      29.545  26.292  84.373  1.00  0.00              
ATOM     98  CA  ALA    53      29.646  24.840  84.210  1.00  0.00              
ATOM     99  C   ALA    53      30.938  24.348  84.817  1.00  0.00              
ATOM    100  O   ALA    53      31.916  24.142  84.128  1.00  0.00              
ATOM    101  N   LYS    54      30.877  24.063  86.108  1.00  0.00              
ATOM    102  CA  LYS    54      32.021  23.634  86.868  1.00  0.00              
ATOM    103  C   LYS    54      32.726  22.368  86.529  1.00  0.00              
ATOM    104  O   LYS    54      33.944  22.207  86.715  1.00  0.00              
ATOM    105  N   GLU    55      32.017  21.361  86.029  1.00  0.00              
ATOM    106  CA  GLU    55      32.610  20.100  85.685  1.00  0.00              
ATOM    107  C   GLU    55      32.814  19.965  84.175  1.00  0.00              
ATOM    108  O   GLU    55      33.199  18.891  83.819  1.00  0.00              
ATOM    109  N   LEU    56      32.519  21.026  83.470  1.00  0.00              
ATOM    110  CA  LEU    56      32.594  20.865  81.998  1.00  0.00              
ATOM    111  C   LEU    56      33.951  20.500  81.456  1.00  0.00              
ATOM    112  O   LEU    56      34.903  21.240  81.586  1.00  0.00              
END
