PFRMAT SS 
TARGET T0053 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t53.t98_6.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 3.70378 
METHOD 
MODEL 1 
M C 0.82 
K C 0.80 
K C 0.51 
A E 0.83 
L E 0.95 
L E 0.98 
V E 0.98 
V E 0.95 
S E 0.82 
F E 0.53 
G C 0.74 
T C 0.69 
S C 0.62 
Y C 0.64 
H C 0.68 
D C 0.54 
T C 0.65 
C C 0.64 
E C 0.57 
K C 0.65 
N C 0.76 
I C 0.53 
V E 0.38 
A C 0.43 
C C 0.48 
E H 0.60 
R H 0.78 
D H 0.82 
L H 0.84 
A H 0.76 
A H 0.57 
S C 0.64 
C C 0.92 
P C 0.96 
D C 0.59 
R H 0.74 
D H 0.84 
L H 0.88 
F H 0.90 
R H 0.84 
A H 0.75 
F H 0.58 
T C 0.62 
S C 0.65 
G C 0.46 
M H 0.63 
I H 0.68 
I H 0.84 
R H 0.89 
K H 0.89 
L H 0.84 
R H 0.67 
Q H 0.51 
R C 0.72 
D C 0.91 
G C 0.82 
I C 0.65 
D C 0.53 
I E 0.42 
D C 0.48 
T C 0.71 
P C 0.58 
L H 0.85 
Q H 0.92 
A H 0.89 
L H 0.91 
Q H 0.94 
K H 0.97 
L H 0.96 
A H 0.94 
A H 0.87 
Q H 0.67 
G H 0.49 
Y C 0.50 
Q H 0.43 
D H 0.49 
V H 0.42 
A H 0.42 
I H 0.38 
Q E 0.38 
S E 0.45 
L E 0.51 
H E 0.58 
I E 0.57 
I C 0.53 
N C 0.75 
G C 0.84 
D H 0.59 
E H 0.75 
Y H 0.86 
E H 0.92 
K H 0.92 
I H 0.87 
V H 0.83 
R H 0.74 
E H 0.68 
V H 0.79 
Q H 0.75 
L H 0.68 
L H 0.65 
R H 0.55 
P H 0.54 
L H 0.72 
F H 0.67 
T H 0.60 
R H 0.49 
L H 0.42 
T C 0.60 
L C 0.70 
G C 0.70 
V C 0.66 
P C 0.67 
L C 0.43 
L C 0.41 
S C 0.60 
S C 0.77 
H C 0.74 
N C 0.68 
D H 0.67 
Y H 0.88 
V H 0.96 
Q H 0.98 
L H 0.98 
M H 0.99 
Q H 0.99 
A H 0.98 
L H 0.98 
R H 0.96 
Q H 0.91 
Q H 0.64 
M C 0.65 
P C 0.80 
S C 0.57 
L C 0.47 
R C 0.50 
Q C 0.51 
T C 0.56 
E C 0.47 
K E 0.65 
V E 0.84 
V E 0.88 
F E 0.84 
M E 0.67 
G C 0.70 
H C 0.87 
G C 0.81 
A C 0.58 
S H 0.58 
H H 0.82 
H H 0.88 
A H 0.93 
F H 0.96 
A H 0.95 
A H 0.94 
Y H 0.93 
A H 0.87 
C H 0.82 
L H 0.87 
D H 0.82 
H H 0.83 
M H 0.79 
M H 0.74 
T H 0.77 
A H 0.74 
Q H 0.58 
R C 0.51 
F C 0.70 
P C 0.76 
A C 0.58 
R C 0.43 
V C 0.48 
G C 0.69 
A C 0.52 
V C 0.51 
E C 0.63 
S C 0.75 
Y C 0.90 
P C 0.86 
E C 0.59 
V C 0.49 
D C 0.40 
I E 0.53 
L E 0.58 
I E 0.46 
D C 0.51 
S C 0.56 
L C 0.58 
R C 0.67 
D C 0.75 
E C 0.87 
G C 0.80 
V C 0.68 
T C 0.49 
G H 0.39 
V H 0.45 
H H 0.46 
L H 0.42 
M C 0.57 
P H 0.50 
L H 0.58 
M H 0.58 
L H 0.50 
V C 0.43 
A C 0.76 
G C 0.90 
D C 0.83 
H C 0.63 
A C 0.64 
I C 0.53 
N C 0.49 
D C 0.45 
M C 0.49 
A C 0.52 
S C 0.67 
D C 0.83 
D C 0.87 
G C 0.90 
D C 0.86 
S C 0.69 
W C 0.46 
K E 0.59 
M E 0.71 
R E 0.77 
F E 0.61 
N C 0.60 
A C 0.53 
A C 0.47 
G C 0.50 
I C 0.66 
P C 0.68 
A C 0.62 
T C 0.74 
P C 0.62 
W C 0.42 
L E 0.43 
S C 0.45 
G C 0.56 
L C 0.76 
G C 0.87 
E C 0.83 
N C 0.84 
P C 0.63 
A C 0.46 
I H 0.44 
R H 0.55 
A H 0.73 
M H 0.73 
F H 0.85 
V H 0.91 
A H 0.94 
H H 0.91 
L H 0.93 
H H 0.93 
Q H 0.94 
A H 0.91 
L H 0.90 
N H 0.88 
M H 0.92 
A H 0.90 
V H 0.93 
E H 0.94 
E H 0.91 
A H 0.85 
A H 0.64 
END 
