REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0053AL277_1_2 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : DEERFIELD 
REMARK  ---------------------------------------------------------- 
TARGET T0053  
AUTHOR 8120-3487-1357  
REMARK Matrix Used: 1aph: BS_30_25%  
REMARK Matrix Used: 1ubw: BS_90_10%   
REMARK Alignment Method Used: Quasi-Global Dynamic Programming  
METHOD Sequence-Structure alignment based on the environments  
METHOD published in: Deerfield, Holland-Minkley, Geigel, and   
METHOD Nicholas 1997. "Classification of the Environment of   
METHOD Protein Residues" J. Prot. Chem. 16:441-446.  
METHOD   
METHOD This test uses our latest (unpublished) environment   
METHOD classifications and extentions.  
MODEL  1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1ubw 
ATOM      1  N   GLY   237      26.172  20.565  85.472  1.00  0.00              
ATOM      2  CA  GLY   237      27.609  20.541  85.779  1.00  0.00              
ATOM      3  C   GLY   237      28.027  21.501  86.907  1.00  0.00              
ATOM      4  O   GLY   237      27.470  22.595  87.074  1.00  0.00              
ATOM      5  N   LEU   238      29.003  21.078  87.700  1.00  0.00              
ATOM      6  CA  LEU   238      29.479  21.918  88.790  1.00  0.00              
ATOM      7  C   LEU   238      30.355  23.024  88.215  1.00  0.00              
ATOM      8  O   LEU   238      31.361  23.414  88.830  1.00  0.00              
ATOM      9  N   GLY   239      29.988  23.482  87.016  1.00  0.00              
ATOM     10  CA  GLY   239      30.728  24.536  86.313  1.00  0.00              
ATOM     11  C   GLY   239      29.789  25.545  85.677  1.00  0.00              
ATOM     12  O   GLY   239      29.906  26.747  85.957  1.00  0.00              
ATOM     13  N   GLU   240      28.875  25.051  84.833  1.00  0.00              
ATOM     14  CA  GLU   240      27.896  25.894  84.118  1.00  0.00              
ATOM     15  C   GLU   240      26.835  26.554  84.997  1.00  0.00              
ATOM     16  O   GLU   240      26.665  27.789  85.002  1.00  0.00              
ATOM     17  N   ASN   241      26.123  25.699  85.720  1.00  0.00              
ATOM     18  CA  ASN   241      25.091  26.104  86.627  1.00  0.00              
ATOM     19  C   ASN   241      25.606  27.232  87.513  1.00  0.00              
ATOM     20  O   ASN   241      24.879  28.219  87.732  1.00  0.00              
ATOM     21  N   PRO   242      26.829  27.086  88.035  1.00  0.00              
ATOM     22  CA  PRO   242      27.393  28.140  88.888  1.00  0.00              
ATOM     23  C   PRO   242      27.829  29.361  88.057  1.00  0.00              
ATOM     24  O   PRO   242      27.758  30.521  88.517  1.00  0.00              
ATOM     25  N   ALA   243      28.210  29.078  86.814  1.00  0.00              
ATOM     26  CA  ALA   243      28.570  30.135  85.880  1.00  0.00              
ATOM     27  C   ALA   243      27.230  30.847  85.628  1.00  0.00              
ATOM     28  O   ALA   243      27.144  32.077  85.762  1.00  0.00              
ATOM     29  N   ILE   244      26.191  30.064  85.344  1.00  0.00              
ATOM     30  CA  ILE   244      24.854  30.600  85.163  1.00  0.00              
ATOM     31  C   ILE   244      24.669  31.320  86.470  1.00  0.00              
ATOM     32  O   ILE   244      24.409  32.515  86.524  1.00  0.00              
ATOM     33  N   ARG   245      24.942  30.604  87.542  1.00  0.00              
ATOM     34  CA  ARG   245      24.822  31.198  88.857  1.00  0.00              
ATOM     35  C   ARG   245      25.531  32.522  89.109  1.00  0.00              
ATOM     36  O   ARG   245      24.883  33.488  89.455  1.00  0.00              
ATOM     37  N   ALA   246      26.835  32.630  88.944  1.00  0.00              
ATOM     38  CA  ALA   246      27.440  33.931  89.205  1.00  0.00              
ATOM     39  C   ALA   246      26.968  35.152  88.355  1.00  0.00              
ATOM     40  O   ALA   246      27.037  36.323  88.819  1.00  0.00              
ATOM     41  N   MET   247      26.524  34.880  87.120  1.00  0.00              
ATOM     42  CA  MET   247      26.010  35.890  86.170  1.00  0.00              
ATOM     43  C   MET   247      24.748  36.535  86.817  1.00  0.00              
ATOM     44  O   MET   247      24.615  37.785  86.872  1.00  0.00              
ATOM     45  N   PHE   248      23.835  35.672  87.292  1.00  0.00              
ATOM     46  CA  PHE   248      22.590  36.108  87.913  1.00  0.00              
ATOM     47  C   PHE   248      22.817  37.051  89.083  1.00  0.00              
ATOM     48  O   PHE   248      22.360  38.169  89.062  1.00  0.00              
ATOM     49  N   VAL   249      23.550  36.595  90.081  1.00  0.00              
ATOM     50  CA  VAL   249      23.885  37.380  91.251  1.00  0.00              
ATOM     51  C   VAL   249      24.676  38.560  90.732  1.00  0.00              
ATOM     52  O   VAL   249      24.565  39.668  91.253  1.00  0.00              
ATOM     53  N   ALA   250      25.524  38.383  89.731  1.00  0.00              
ATOM     54  CA  ALA   250      26.277  39.573  89.334  1.00  0.00              
ATOM     55  C   ALA   250      25.366  40.686  88.788  1.00  0.00              
ATOM     56  O   ALA   250      25.815  41.844  88.645  1.00  0.00              
ATOM     57  N   HIS   251      24.123  40.319  88.454  1.00  0.00              
ATOM     58  CA  HIS   251      23.134  41.231  87.877  1.00  0.00              
ATOM     59  C   HIS   251      22.335  42.168  88.808  1.00  0.00              
ATOM     60  O   HIS   251      21.937  43.306  88.437  1.00  0.00              
ATOM     61  N   LEU   252      22.122  41.685  90.034  1.00  0.00              
ATOM     62  CA  LEU   252      21.378  42.425  91.056  1.00  0.00              
ATOM     63  C   LEU   252      21.480  43.927  91.242  1.00  0.00              
ATOM     64  O   LEU   252      20.485  44.568  91.588  1.00  0.00              
ATOM     65  N   HIS   253      22.672  44.498  91.071  1.00  0.00              
ATOM     66  CA  HIS   253      22.889  45.949  91.310  1.00  0.00              
ATOM     67  C   HIS   253      22.359  46.729  90.166  1.00  0.00              
ATOM     68  O   HIS   253      21.879  47.883  90.224  1.00  0.00              
ATOM     69  N   GLN   254      22.497  46.014  89.081  1.00  0.00              
ATOM     70  CA  GLN   254      22.093  46.590  87.858  1.00  0.00              
ATOM     71  C   GLN   254      20.635  46.820  88.076  1.00  0.00              
ATOM     72  O   GLN   254      20.140  47.935  87.929  1.00  0.00              
ATOM     73  N   ALA   255      19.961  45.776  88.521  1.00  0.00              
ATOM     74  CA  ALA   255      18.524  45.913  88.747  1.00  0.00              
ATOM     75  C   ALA   255      18.209  46.951  89.793  1.00  0.00              
ATOM     76  O   ALA   255      17.172  47.654  89.733  1.00  0.00              
ATOM     77  N   LEU   256      19.086  46.988  90.796  1.00  0.00              
ATOM     78  CA  LEU   256      18.785  47.926  91.830  1.00  0.00              
ATOM     79  C   LEU   256      18.857  49.270  91.114  1.00  0.00              
ATOM     80  O   LEU   256      17.903  50.056  91.174  1.00  0.00              
ATOM     81  N   ASN   257      19.959  49.484  90.385  1.00  0.00              
ATOM     82  CA  ASN   257      20.147  50.715  89.634  1.00  0.00              
ATOM     83  C   ASN   257      18.908  51.104  88.846  1.00  0.00              
ATOM     84  O   ASN   257      18.465  52.245  88.927  1.00  0.00              
ATOM     85  N   MET   258      18.391  50.173  88.051  1.00  0.00              
ATOM     86  CA  MET   258      17.226  50.430  87.243  1.00  0.00              
ATOM     87  C   MET   258      16.148  51.064  88.118  1.00  0.00              
ATOM     88  O   MET   258      15.621  52.172  87.879  1.00  0.00              
ATOM     89  N   ALA   259      15.901  50.374  89.219  1.00  0.00              
ATOM     90  CA  ALA   259      14.885  50.818  90.143  1.00  0.00              
ATOM     91  C   ALA   259      14.928  52.160  90.872  1.00  0.00              
ATOM     92  O   ALA   259      13.908  52.784  91.069  1.00  0.00              
ATOM     93  N   VAL   260      16.099  52.621  91.278  1.00  0.00              
ATOM     94  CA  VAL   260      16.238  53.835  92.082  1.00  0.00              
ATOM     95  C   VAL   260      17.128  54.973  91.598  1.00  0.00              
ATOM     96  O   VAL   260      17.069  56.068  92.165  1.00  0.00              
ATOM     97  N   GLU   261      17.986  54.719  90.610  1.00  0.00              
ATOM     98  CA  GLU   261      18.887  55.743  90.135  1.00  0.00              
ATOM     99  C   GLU   261      18.356  57.106  89.841  1.00  0.00              
ATOM    100  O   GLU   261      19.013  58.103  90.149  1.00  0.00              
ATOM    101  N   GLU   262      17.176  57.196  89.258  1.00  0.00              
ATOM    102  CA  GLU   262      16.697  58.548  89.014  1.00  0.00              
ATOM    103  C   GLU   262      15.896  59.023  90.213  1.00  0.00              
ATOM    104  O   GLU   262      15.972  60.190  90.605  1.00  0.00              
ATOM    105  N   ALA   263      15.139  58.084  90.778  1.00  0.00              
ATOM    106  CA  ALA   263      14.278  58.331  91.919  1.00  0.00              
ATOM    107  C   ALA   263      15.018  58.950  93.077  1.00  0.00              
ATOM    108  O   ALA   263      14.498  59.878  93.689  1.00  0.00              
ATOM    109  N   ALA   264      16.212  58.422  93.343  1.00  0.00              
ATOM    110  CA  ALA   264      17.141  58.831  94.415  1.00  0.00              
ATOM    111  C   ALA   264      17.375  60.325  94.645  1.00  0.00              
ATOM    112  O   ALA   264      17.520  60.776  95.786  1.00  0.00              
END
