PFRMAT SS 
TARGET T0052 
AUTHOR 4438-1214-3249 
REMARK 
METHOD jackknife statistics from 680 chains of PDBselect list 
METHOD NO multiple sequence alignment used in this prediction 
METHOD no pre or post-processing of prediction. 
METHOD Citation 1.  (use of multiple sequence alignment) 
METHOD M.J. Thompson & R.A. Goldstein (1997), 
METHOD Predicting Protein Secondary Structure 
METHOD Using Probabilistic Substitution Schemata, 
METHOD Protein Science 6, 1963-1975 
METHOD Citation 2.  (original theory development) 
METHOD M.J. Thompson & R.A. Goldstein (1996), 
METHOD Predicting Solvent Accessibility: Higher 
METHOD Accuracy Using Bayesian Statistics and 
METHOD Optimized Residue Substitution Classes, Proteins 25, 38-47 
MODEL 1 
 L  C  0.67 
 G  C  0.58 
 K  C  0.40 
 F  C  0.00 
 S  E  0.00 
 Q  E  0.00 
 T  E  0.33 
 C  E  0.00 
 Y  C  1.00 
 N  C  1.00 
 S  C  0.56 
 A  C  0.40 
 I  C  0.60 
 Q  C  0.50 
 G  C  0.58 
 S  C  0.56 
 V  E  0.00 
 L  E  1.00 
 T  E  0.33 
 S  E  0.00 
 T  C  0.00 
 C  C  0.00 
 E  C  1.00 
 R  C  0.60 
 T  C  0.00 
 N  C  1.00 
 G  C  0.58 
 G  C  0.58 
 Y  C  1.00 
 N  C  1.00 
 T  C  0.00 
 S  C  0.56 
 S  C  0.56 
 I  C  0.60 
 D  C  0.80 
 L  C  0.67 
 N  C  1.00 
 S  C  0.56 
 V  E  0.00 
 I  E  1.00 
 E  E  0.00 
 N  C  1.00 
 V  C  0.50 
 D  C  0.80 
 G  C  0.58 
 S  C  0.56 
 L  C  0.67 
 K  C  0.40 
 W  C  0.00 
 Q  C  0.50 
 P  C  0.67 
 S  C  0.56 
 N  C  1.00 
 F  C  0.00 
 I  E  1.00 
 E  E  0.00 
 T  H  0.50 
 C  C  0.00 
 R  C  0.60 
 N  C  1.00 
 T  C  0.00 
 N  C  1.00 
 L  C  0.67 
 A  C  0.40 
 G  C  0.58 
 S  C  0.56 
 S  H  0.00 
 E  H  1.00 
 L  H  0.00 
 A  H  0.00 
 A  H  0.00 
 E  H  1.00 
 C  H  0.00 
 K  H  0.00 
 T  H  0.50 
 R  H  1.00 
 A  H  0.00 
 Q  H  0.00 
 Q  H  0.00 
 F  H  0.00 
 V  E  0.00 
 S  C  0.56 
 T  C  0.00 
 K  C  0.40 
 I  C  0.60 
 N  C  1.00 
 L  C  0.67 
 D  C  0.80 
 D  C  0.80 
 H  C  0.83 
 I  E  1.00 
 A  E  0.00 
 N  C  1.00 
 I  C  0.60 
 D  C  0.80 
 G  C  0.58 
 T  E  0.33 
 L  C  0.67 
 K  E  0.00 
 Y  E  0.00 
 E  E  0.00 
END 
