REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0052AL084_3 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : DIFRANCESCO 
REMARK  ---------------------------------------------------------- 
TARGET T0052  
AUTHOR 7278-7379-8158  
METHOD The method is based on a combination of hidden Markov models and 	  
METHOD secondary structure prediction. Each HMM represents a structural family   
METHOD of proteins and it is trained from known secondary structure sequences   
METHOD of proteins belonging to the structural family.  
METHOD Secondary structure prediction is performed for the target sequence   
METHOD using several types of prediction algorithms (GOR, QL, PHD, etc.). The   
METHOD predicted fold of the target protein is the fold described by the HMM   
METHOD that fits one (or most) of the predicted secondary structure sequences   
METHOD the best.  
METHOD At present the library consists of about 300 HMMs  
METHOD Di Francesco et al. JMB (1997) 267, 446-463  
METHOD Di Francesco et al. Proteins, Supplement 1 (1997) 123-128  
REMARK Chosen model: OB Fold model  
REMARK PHD prediction used for the alignment  
MODEL 3  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 3il8 
ATOM      1  N   ASN    10       3.144  33.259  11.164  1.00  0.00              
ATOM      2  CA  ASN    10       4.563  33.027  11.202  1.00  0.00              
ATOM      3  C   ASN    10       4.908  32.128  12.401  1.00  0.00              
ATOM      4  O   ASN    10       4.280  32.212  13.468  1.00  0.00              
ATOM      5  N   SER    11       5.995  31.395  12.285  1.00  0.00              
ATOM      6  CA  SER    11       6.456  30.490  13.345  1.00  0.00              
ATOM      7  C   SER    11       7.944  30.309  13.083  1.00  0.00              
ATOM      8  O   SER    11       8.465  30.621  12.016  1.00  0.00              
ATOM      9  N   ALA    12       8.585  29.812  14.093  1.00  0.00              
ATOM     10  CA  ALA    12      10.018  29.592  14.105  1.00  0.00              
ATOM     11  C   ALA    12      10.419  28.353  13.327  1.00  0.00              
ATOM     12  O   ALA    12       9.724  27.335  13.443  1.00  0.00              
ATOM     13  N   ILE    13      11.479  28.490  12.546  1.00  0.00              
ATOM     14  CA  ILE    13      11.976  27.405  11.699  1.00  0.00              
ATOM     15  C   ILE    13      12.422  26.199  12.498  1.00  0.00              
ATOM     16  O   ILE    13      12.597  25.110  11.929  1.00  0.00              
ATOM     17  N   GLN    14      12.588  26.348  13.806  1.00  0.00              
ATOM     18  CA  GLN    14      13.039  25.150  14.584  1.00  0.00              
ATOM     19  C   GLN    14      11.951  24.108  14.649  1.00  0.00              
ATOM     20  O   GLN    14      12.210  22.943  14.941  1.00  0.00              
ATOM     21  N   GLY    15      10.715  24.542  14.315  1.00  0.00              
ATOM     22  CA  GLY    15       9.632  23.571  14.392  1.00  0.00              
ATOM     23  C   GLY    15       9.544  22.702  13.135  1.00  0.00              
ATOM     24  O   GLY    15       8.729  21.794  13.160  1.00  0.00              
ATOM     25  N   SER    16      10.384  23.007  12.150  1.00  0.00              
ATOM     26  CA  SER    16      10.268  22.205  10.900  1.00  0.00              
ATOM     27  C   SER    16      11.322  21.127  10.883  1.00  0.00              
ATOM     28  O   SER    16      12.479  21.422  11.228  1.00  0.00              
ATOM     29  N   VAL    17      10.933  19.943  10.479  1.00  0.00              
ATOM     30  CA  VAL    17      11.961  18.902  10.398  1.00  0.00              
ATOM     31  C   VAL    17      12.031  18.400   8.938  1.00  0.00              
ATOM     32  O   VAL    17      12.962  17.671   8.626  1.00  0.00              
ATOM     33  N   LEU    18      11.002  18.728   8.159  1.00  0.00              
ATOM     34  CA  LEU    18      11.085  18.288   6.737  1.00  0.00              
ATOM     35  C   LEU    18      10.344  19.282   5.860  1.00  0.00              
ATOM     36  O   LEU    18       9.345  19.854   6.300  1.00  0.00              
ATOM     37  N   THR    19      10.890  19.547   4.701  1.00  0.00              
ATOM     38  CA  THR    19      10.321  20.496   3.743  1.00  0.00              
ATOM     39  C   THR    19      10.087  19.831   2.384  1.00  0.00              
ATOM     40  O   THR    19      11.000  19.145   1.884  1.00  0.00              
ATOM     41  N   SER    20       8.966  20.048   1.781  1.00  0.00              
ATOM     42  CA  SER    20       8.748  19.511   0.433  1.00  0.00              
ATOM     43  C   SER    20       8.241  20.690  -0.441  1.00  0.00              
ATOM     44  O   SER    20       7.269  21.356   0.008  1.00  0.00              
ATOM     45  N   THR    21       8.898  20.904  -1.545  1.00  0.00              
ATOM     46  CA  THR    21       8.462  22.024  -2.470  1.00  0.00              
ATOM     47  C   THR    21       8.091  21.348  -3.788  1.00  0.00              
ATOM     48  O   THR    21       8.957  20.637  -4.366  1.00  0.00              
ATOM     49  N   CYS    22       6.845  21.436  -4.225  1.00  0.00              
ATOM     50  CA  CYS    22       6.427  20.774  -5.500  1.00  0.00              
ATOM     51  C   CYS    22       6.083  21.888  -6.495  1.00  0.00              
ATOM     52  O   CYS    22       5.139  22.649  -6.226  1.00  0.00              
ATOM     53  N   GLU    23       6.825  22.037  -7.570  1.00  0.00              
ATOM     54  CA  GLU    23       6.540  23.122  -8.529  1.00  0.00              
ATOM     55  C   GLU    23       5.199  22.868  -9.231  1.00  0.00              
ATOM     56  O   GLU    23       4.771  21.723  -9.333  1.00  0.00              
ATOM     57  N   ARG    24       4.492  23.932  -9.623  1.00  0.00              
ATOM     58  CA  ARG    24       3.194  23.805 -10.324  1.00  0.00              
ATOM     59  C   ARG    24       3.469  23.050 -11.659  1.00  0.00              
ATOM     60  O   ARG    24       4.610  23.020 -12.119  1.00  0.00              
ATOM     61  N   THR    25       2.377  22.492 -12.166  1.00  0.00              
ATOM     62  CA  THR    25       2.520  21.693 -13.441  1.00  0.00              
ATOM     63  C   THR    25       1.120  21.162 -13.683  1.00  0.00              
ATOM     64  O   THR    25       0.122  21.659 -13.139  1.00  0.00              
ATOM     65  N   ASN    26       1.035  20.180 -14.520  1.00  0.00              
ATOM     66  CA  ASN    26      -0.292  19.640 -14.895  1.00  0.00              
ATOM     67  C   ASN    26      -1.089  19.111 -13.730  1.00  0.00              
ATOM     68  O   ASN    26      -2.331  19.101 -13.721  1.00  0.00              
ATOM     69  N   GLY    27      -0.352  18.620 -12.724  1.00  0.00              
ATOM     70  CA  GLY    27      -0.898  18.033 -11.504  1.00  0.00              
ATOM     71  C   GLY    27      -1.566  19.003 -10.534  1.00  0.00              
ATOM     72  O   GLY    27      -2.523  18.622  -9.816  1.00  0.00              
ATOM     73  N   GLY    28      -1.117  20.222 -10.512  1.00  0.00              
ATOM     74  CA  GLY    28      -1.637  21.271  -9.582  1.00  0.00              
ATOM     75  C   GLY    28      -1.168  22.583 -10.104  1.00  0.00              
ATOM     76  O   GLY    28       0.059  22.845 -10.333  1.00  0.00              
ATOM     77  N   TYR    29      -2.124  23.531 -10.242  1.00  0.00              
ATOM     78  CA  TYR    29      -1.773  24.833 -10.813  1.00  0.00              
ATOM     79  C   TYR    29      -0.887  25.658  -9.926  1.00  0.00              
ATOM     80  O   TYR    29      -0.322  26.661 -10.381  1.00  0.00              
ATOM     81  N   ASN    30      -0.815  25.278  -8.644  1.00  0.00              
ATOM     82  CA  ASN    30       0.022  26.068  -7.720  1.00  0.00              
ATOM     83  C   ASN    30       1.236  25.242  -7.294  1.00  0.00              
ATOM     84  O   ASN    30       1.182  24.002  -7.219  1.00  0.00              
ATOM     85  N   THR    31       2.235  26.062  -6.997  1.00  0.00              
ATOM     86  CA  THR    31       3.457  25.547  -6.390  1.00  0.00              
ATOM     87  C   THR    31       3.021  25.295  -4.922  1.00  0.00              
ATOM     88  O   THR    31       2.260  26.117  -4.378  1.00  0.00              
ATOM     89  N   SER    32       3.403  24.151  -4.391  1.00  0.00              
ATOM     90  CA  SER    32       2.949  23.904  -2.994  1.00  0.00              
ATOM     91  C   SER    32       4.165  23.692  -2.114  1.00  0.00              
ATOM     92  O   SER    32       5.158  23.059  -2.591  1.00  0.00              
ATOM     93  N   SER    33       4.040  24.179  -0.905  1.00  0.00              
ATOM     94  CA  SER    33       5.164  23.999   0.088  1.00  0.00              
ATOM     95  C   SER    33       4.528  23.244   1.247  1.00  0.00              
ATOM     96  O   SER    33       3.566  23.736   1.858  1.00  0.00              
ATOM     97  N   ILE    34       5.048  22.055   1.527  1.00  0.00              
ATOM     98  CA  ILE    34       4.515  21.209   2.610  1.00  0.00              
ATOM     99  C   ILE    34       5.650  20.961   3.627  1.00  0.00              
ATOM    100  O   ILE    34       6.735  20.559   3.239  1.00  0.00              
ATOM    101  N   ASP    35       5.353  21.382   4.861  1.00  0.00              
ATOM    102  CA  ASP    35       6.368  21.130   5.925  1.00  0.00              
ATOM    103  C   ASP    35       5.823  20.110   6.920  1.00  0.00              
ATOM    104  O   ASP    35       4.617  20.055   7.218  1.00  0.00              
ATOM    105  N   LEU    36       6.755  19.308   7.418  1.00  0.00              
ATOM    106  CA  LEU    36       6.432  18.301   8.497  1.00  0.00              
ATOM    107  C   LEU    36       7.080  18.934   9.748  1.00  0.00              
ATOM    108  O   LEU    36       8.246  19.395   9.739  1.00  0.00              
ATOM    109  N   ASN    37       6.205  19.154  10.759  1.00  0.00              
ATOM    110  CA  ASN    37       6.715  19.787  12.022  1.00  0.00              
ATOM    111  C   ASN    37       7.423  18.758  12.905  1.00  0.00              
ATOM    112  O   ASN    37       7.287  17.567  12.709  1.00  0.00              
ATOM    113  N   SER    38       8.114  19.289  13.930  1.00  0.00              
ATOM    114  CA  SER    38       8.840  18.422  14.899  1.00  0.00              
ATOM    115  C   SER    38       7.953  17.320  15.453  1.00  0.00              
ATOM    116  O   SER    38       8.467  16.222  15.629  1.00  0.00              
ATOM    117  N   VAL    43       6.655  17.575  15.685  1.00  0.00              
ATOM    118  CA  VAL    43       5.746  16.571  16.213  1.00  0.00              
ATOM    119  C   VAL    43       5.109  15.660  15.165  1.00  0.00              
ATOM    120  O   VAL    43       4.270  14.808  15.537  1.00  0.00              
ATOM    121  N   ASP    44       5.483  15.827  13.898  1.00  0.00              
ATOM    122  CA  ASP    44       4.918  15.004  12.825  1.00  0.00              
ATOM    123  C   ASP    44       3.700  15.548  12.141  1.00  0.00              
ATOM    124  O   ASP    44       3.152  14.880  11.218  1.00  0.00              
ATOM    125  N   GLY    45       3.134  16.680  12.551  1.00  0.00              
ATOM    126  CA  GLY    45       1.932  17.215  11.858  1.00  0.00              
ATOM    127  C   GLY    45       2.451  17.836  10.551  1.00  0.00              
ATOM    128  O   GLY    45       3.635  18.199  10.512  1.00  0.00              
ATOM    129  N   SER    46       1.609  18.034   9.586  1.00  0.00              
ATOM    130  CA  SER    46       2.100  18.711   8.350  1.00  0.00              
ATOM    131  C   SER    46       1.315  19.988   8.140  1.00  0.00              
ATOM    132  O   SER    46       0.140  20.003   8.528  1.00  0.00              
ATOM    133  N   LEU    47       1.860  20.991   7.513  1.00  0.00              
ATOM    134  CA  LEU    47       1.166  22.204   7.145  1.00  0.00              
ATOM    135  C   LEU    47       1.605  22.578   5.690  1.00  0.00              
ATOM    136  O   LEU    47       2.771  22.297   5.324  1.00  0.00              
ATOM    137  N   LYS    48       0.789  23.373   5.069  1.00  0.00              
ATOM    138  CA  LYS    48       1.131  23.946   3.757  1.00  0.00              
ATOM    139  C   LYS    48       1.431  25.396   4.009  1.00  0.00              
ATOM    140  O   LYS    48       0.727  26.014   4.831  1.00  0.00              
ATOM    141  N   TRP    49       2.405  25.953   3.300  1.00  0.00              
ATOM    142  CA  TRP    49       2.761  27.350   3.427  1.00  0.00              
ATOM    143  C   TRP    49       2.614  27.979   1.996  1.00  0.00              
ATOM    144  O   TRP    49       2.722  27.214   1.022  1.00  0.00              
ATOM    145  N   GLN    50       2.371  29.247   2.016  1.00  0.00              
ATOM    146  CA  GLN    50       2.172  30.038   0.782  1.00  0.00              
ATOM    147  C   GLN    50       3.535  30.521   0.358  1.00  0.00              
ATOM    148  O   GLN    50       4.198  31.335   1.026  1.00  0.00              
ATOM    149  N   PRO    51       4.004  29.978  -0.779  1.00  0.00              
ATOM    150  CA  PRO    51       5.304  30.348  -1.301  1.00  0.00              
ATOM    151  C   PRO    51       5.475  31.828  -1.615  1.00  0.00              
ATOM    152  O   PRO    51       6.597  32.360  -1.729  1.00  0.00              
ATOM    153  N   SER    52       4.360  32.532  -1.780  1.00  0.00              
ATOM    154  CA  SER    52       4.451  33.972  -2.120  1.00  0.00              
ATOM    155  C   SER    52       4.726  34.822  -0.869  1.00  0.00              
ATOM    156  O   SER    52       5.212  35.937  -1.024  1.00  0.00              
ATOM    157  N   ASN    53       4.331  34.307   0.297  1.00  0.00              
ATOM    158  CA  ASN    53       4.538  35.174   1.500  1.00  0.00              
ATOM    159  C   ASN    53       5.993  35.326   1.810  1.00  0.00              
ATOM    160  O   ASN    53       6.814  34.385   1.819  1.00  0.00              
ATOM    161  N   GLU    68       6.404  36.540   2.113  1.00  0.00              
ATOM    162  CA  GLU    68       7.790  36.841   2.480  1.00  0.00              
ATOM    163  C   GLU    68       8.218  36.053   3.717  1.00  0.00              
ATOM    164  O   GLU    68       9.409  35.625   3.782  1.00  0.00              
ATOM    165  N   LEU    69       7.343  35.905   4.707  1.00  0.00              
ATOM    166  CA  LEU    69       7.763  35.215   5.957  1.00  0.00              
ATOM    167  C   LEU    69       8.030  33.746   5.655  1.00  0.00              
ATOM    168  O   LEU    69       8.924  33.150   6.260  1.00  0.00              
ATOM    169  N   ALA    70       7.263  33.154   4.754  1.00  0.00              
ATOM    170  CA  ALA    70       7.470  31.740   4.370  1.00  0.00              
ATOM    171  C   ALA    70       8.846  31.536   3.751  1.00  0.00              
ATOM    172  O   ALA    70       9.658  30.639   3.957  1.00  0.00              
ATOM    173  N   ALA    71       9.105  32.505   2.818  1.00  0.00              
ATOM    174  CA  ALA    71      10.423  32.434   2.128  1.00  0.00              
ATOM    175  C   ALA    71      11.523  32.501   3.159  1.00  0.00              
ATOM    176  O   ALA    71      12.555  31.795   3.084  1.00  0.00              
ATOM    177  N   GLU    72      11.383  33.365   4.163  1.00  0.00              
ATOM    178  CA  GLU    72      12.419  33.502   5.225  1.00  0.00              
ATOM    179  C   GLU    72      12.530  32.281   6.094  1.00  0.00              
ATOM    180  O   GLU    72      13.623  31.910   6.527  1.00  0.00              
ATOM    181  N   CYS    73      11.408  31.665   6.393  1.00  0.00              
ATOM    182  CA  CYS    73      11.434  30.429   7.221  1.00  0.00              
ATOM    183  C   CYS    73      12.119  29.304   6.428  1.00  0.00              
ATOM    184  O   CYS    73      12.920  28.528   6.993  1.00  0.00              
ATOM    185  N   LYS    74      11.802  29.196   5.168  1.00  0.00              
ATOM    186  CA  LYS    74      12.378  28.129   4.298  1.00  0.00              
ATOM    187  C   LYS    74      13.878  28.246   4.233  1.00  0.00              
ATOM    188  O   LYS    74      14.734  27.351   4.344  1.00  0.00              
ATOM    189  N   THR    75      14.327  29.473   4.021  1.00  0.00              
ATOM    190  CA  THR    75      15.750  29.789   3.937  1.00  0.00              
ATOM    191  C   THR    75      16.460  29.449   5.216  1.00  0.00              
ATOM    192  O   THR    75      17.552  28.858   5.190  1.00  0.00              
ATOM    193  N   ARG    76      15.868  29.808   6.376  1.00  0.00              
ATOM    194  CA  ARG    76      16.530  29.517   7.680  1.00  0.00              
ATOM    195  C   ARG    76      16.636  28.036   7.946  1.00  0.00              
ATOM    196  O   ARG    76      17.665  27.571   8.423  1.00  0.00              
ATOM    197  N   ALA    77      15.529  27.375   7.724  1.00  0.00              
ATOM    198  CA  ALA    77      15.467  25.909   7.880  1.00  0.00              
ATOM    199  C   ALA    77      16.602  25.295   7.040  1.00  0.00              
ATOM    200  O   ALA    77      17.314  24.396   7.528  1.00  0.00              
ATOM    201  N   GLN    78      16.679  25.756   5.776  1.00  0.00              
ATOM    202  CA  GLN    78      17.735  25.184   4.912  1.00  0.00              
ATOM    203  C   GLN    78      19.161  25.461   5.417  1.00  0.00              
ATOM    204  O   GLN    78      20.079  24.612   5.280  1.00  0.00              
ATOM    205  N   GLN    79      19.361  26.651   5.968  1.00  0.00              
ATOM    206  CA  GLN    79      20.735  27.027   6.446  1.00  0.00              
ATOM    207  C   GLN    79      21.084  26.152   7.610  1.00  0.00              
ATOM    208  O   GLN    79      22.196  25.649   7.812  1.00  0.00              
ATOM    209  N   PHE    80      20.080  25.873   8.423  1.00  0.00              
ATOM    210  CA  PHE    80      20.268  25.019   9.604  1.00  0.00              
ATOM    211  C   PHE    80      20.629  23.589   9.219  1.00  0.00              
ATOM    212  O   PHE    80      21.688  23.032   9.477  1.00  0.00              
ATOM    213  N   VAL    81      19.657  22.970   8.572  1.00  0.00              
ATOM    214  CA  VAL    81      19.689  21.581   8.136  1.00  0.00              
ATOM    215  C   VAL    81      20.917  21.320   7.286  1.00  0.00              
ATOM    216  O   VAL    81      21.473  20.200   7.357  1.00  0.00              
ATOM    217  N   SER    82      21.320  22.300   6.493  1.00  0.00              
ATOM    218  CA  SER    82      22.480  22.069   5.625  1.00  0.00              
ATOM    219  C   SER    82      23.726  21.727   6.405  1.00  0.00              
ATOM    220  O   SER    82      24.454  20.835   5.942  1.00  0.00              
ATOM    221  N   THR    83      23.976  22.419   7.510  1.00  0.00              
ATOM    222  CA  THR    83      25.172  22.157   8.317  1.00  0.00              
ATOM    223  C   THR    83      24.807  21.358   9.568  1.00  0.00              
ATOM    224  O   THR    83      25.376  21.659  10.629  1.00  0.00              
ATOM    225  N   LYS    84      23.940  20.383   9.384  1.00  0.00              
ATOM    226  CA  LYS    84      23.455  19.491  10.450  1.00  0.00              
ATOM    227  C   LYS    84      24.194  18.157  10.457  1.00  0.00              
ATOM    228  O   LYS    84      23.544  17.120  10.199  1.00  0.00              
END
