REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0046AL215_1_2 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : ZHU-JUN 
REMARK  ---------------------------------------------------------- 
TARGET     T0046  
AUTHOR     4070-8855-4894  
METHOD     The target is compared with PDB25 database (U.Hobohm et al., 1992).  
METHOD     For each structure in PDB25, a model is built in the following way:  
METHOD     the sequence (query) is compared with NR database using transitive   
METHOD     BLAST (Neuwald et al. 1997). Similar sequences are collected and   
METHOD     purged at score 150.  Those sequences are aligned with query   
METHOD     sequence using Bayesian aligner (Zhu et al., 1998) and a   
METHOD     profile-like model is built (Lawrence et al. 1993; Gribskov et al.,  
METHOD     1987; unpublished result by Jun Zhu, Roland Luthy and Charlse E.   
METHOD     Lawrence).  Then, the target file is compared with the models   
METHOD     derived from PDB25.  
MODEL     1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1cid 
ATOM      1  N   VAL    27      -8.632  55.309  55.298  1.00  0.00              
ATOM      2  CA  VAL    27      -8.744  54.082  56.169  1.00  0.00              
ATOM      3  C   VAL    27     -10.152  53.941  56.762  1.00  0.00              
ATOM      4  O   VAL    27     -10.426  53.328  57.802  1.00  0.00              
ATOM      5  N   THR    28     -11.020  54.564  56.000  1.00  0.00              
ATOM      6  CA  THR    28     -12.459  54.552  56.238  1.00  0.00              
ATOM      7  C   THR    28     -12.891  53.634  55.068  1.00  0.00              
ATOM      8  O   THR    28     -13.932  52.978  55.242  1.00  0.00              
ATOM      9  N   VAL    29     -12.012  53.696  54.054  1.00  0.00              
ATOM     10  CA  VAL    29     -12.425  52.858  52.939  1.00  0.00              
ATOM     11  C   VAL    29     -11.613  51.622  52.699  1.00  0.00              
ATOM     12  O   VAL    29     -10.402  51.696  52.906  1.00  0.00              
ATOM     13  N   ILE    30     -12.261  50.561  52.271  1.00  0.00              
ATOM     14  CA  ILE    30     -11.797  49.249  51.835  1.00  0.00              
ATOM     15  C   ILE    30     -12.728  49.014  50.587  1.00  0.00              
ATOM     16  O   ILE    30     -13.904  49.122  50.937  1.00  0.00              
ATOM     17  N   THR    31     -12.188  48.796  49.403  1.00  0.00              
ATOM     18  CA  THR    31     -13.088  48.650  48.280  1.00  0.00              
ATOM     19  C   THR    31     -12.856  47.415  47.431  1.00  0.00              
ATOM     20  O   THR    31     -11.692  46.981  47.387  1.00  0.00              
ATOM     21  N   ILE    32     -13.862  46.880  46.785  1.00  0.00              
ATOM     22  CA  ILE    32     -13.469  45.744  45.956  1.00  0.00              
ATOM     23  C   ILE    32     -14.281  45.964  44.717  1.00  0.00              
ATOM     24  O   ILE    32     -15.445  46.227  45.025  1.00  0.00              
ATOM     25  N   GLN    33     -13.665  46.002  43.529  1.00  0.00              
ATOM     26  CA  GLN    33     -14.470  46.164  42.332  1.00  0.00              
ATOM     27  C   GLN    33     -13.900  45.167  41.305  1.00  0.00              
ATOM     28  O   GLN    33     -12.710  44.863  41.324  1.00  0.00              
ATOM     29  N   ALA    34     -14.889  44.759  40.533  1.00  0.00              
ATOM     30  CA  ALA    34     -14.630  43.768  39.453  1.00  0.00              
ATOM     31  C   ALA    34     -15.096  44.297  38.095  1.00  0.00              
ATOM     32  O   ALA    34     -16.043  45.135  38.008  1.00  0.00              
ATOM     33  N   SER    35     -14.528  43.890  36.987  1.00  0.00              
ATOM     34  CA  SER    35     -15.015  44.405  35.696  1.00  0.00              
ATOM     35  C   SER    35     -14.956  43.339  34.627  1.00  0.00              
ATOM     36  O   SER    35     -13.991  42.564  34.655  1.00  0.00              
ATOM     37  N   ASN    36     -15.937  43.350  33.761  1.00  0.00              
ATOM     38  CA  ASN    36     -15.858  42.290  32.703  1.00  0.00              
ATOM     39  C   ASN    36     -17.156  41.523  32.846  1.00  0.00              
ATOM     40  O   ASN    36     -17.991  41.861  33.696  1.00  0.00              
ATOM     41  N   SER    37     -17.286  40.491  32.046  1.00  0.00              
ATOM     42  CA  SER    37     -18.451  39.598  31.971  1.00  0.00              
ATOM     43  C   SER    37     -18.865  38.684  33.126  1.00  0.00              
ATOM     44  O   SER    37     -18.505  37.471  33.308  1.00  0.00              
ATOM     45  N   THR    38     -19.762  39.338  33.895  1.00  0.00              
ATOM     46  CA  THR    38     -20.306  38.621  35.073  1.00  0.00              
ATOM     47  C   THR    38     -21.789  38.303  34.961  1.00  0.00              
ATOM     48  O   THR    38     -22.487  39.245  34.530  1.00  0.00              
ATOM     49  N   GLU    39     -22.165  37.110  35.379  1.00  0.00              
ATOM     50  CA  GLU    39     -23.580  36.709  35.476  1.00  0.00              
ATOM     51  C   GLU    39     -24.253  37.577  36.541  1.00  0.00              
ATOM     52  O   GLU    39     -23.507  38.035  37.407  1.00  0.00              
ATOM     53  N   LEU    40     -25.549  37.724  36.617  1.00  0.00              
ATOM     54  CA  LEU    40     -26.300  38.460  37.659  1.00  0.00              
ATOM     55  C   LEU    40     -26.693  37.587  38.867  1.00  0.00              
ATOM     56  O   LEU    40     -27.428  37.976  39.792  1.00  0.00              
ATOM     57  N   ASP    41     -26.259  36.349  38.881  1.00  0.00              
ATOM     58  CA  ASP    41     -26.310  35.368  39.973  1.00  0.00              
ATOM     59  C   ASP    41     -24.799  35.248  40.377  1.00  0.00              
ATOM     60  O   ASP    41     -24.091  34.207  40.457  1.00  0.00              
ATOM     61  N   MET    42     -24.207  36.433  40.552  1.00  0.00              
ATOM     62  CA  MET    42     -22.802  36.718  40.903  1.00  0.00              
ATOM     63  C   MET    42     -22.806  37.883  41.936  1.00  0.00              
ATOM     64  O   MET    42     -23.443  38.922  41.608  1.00  0.00              
ATOM     65  N   THR    43     -22.154  37.605  43.085  1.00  0.00              
ATOM     66  CA  THR    43     -22.141  38.679  44.097  1.00  0.00              
ATOM     67  C   THR    43     -20.723  38.849  44.596  1.00  0.00              
ATOM     68  O   THR    43     -20.011  37.873  44.384  1.00  0.00              
ATOM     69  N   ASP    44     -20.465  39.991  45.127  1.00  0.00              
ATOM     70  CA  ASP    44     -19.157  40.338  45.664  1.00  0.00              
ATOM     71  C   ASP    44     -19.286  40.334  47.209  1.00  0.00              
ATOM     72  O   ASP    44     -20.328  40.697  47.795  1.00  0.00              
ATOM     73  N   PHE    45     -18.197  39.889  47.778  1.00  0.00              
ATOM     74  CA  PHE    45     -18.132  39.668  49.207  1.00  0.00              
ATOM     75  C   PHE    45     -16.820  40.140  49.778  1.00  0.00              
ATOM     76  O   PHE    45     -15.773  39.704  49.296  1.00  0.00              
ATOM     77  N   VAL    46     -16.890  40.940  50.801  1.00  0.00              
ATOM     78  CA  VAL    46     -15.753  41.462  51.577  1.00  0.00              
ATOM     79  C   VAL    46     -15.938  40.768  52.940  1.00  0.00              
ATOM     80  O   VAL    46     -17.001  40.857  53.526  1.00  0.00              
ATOM     81  N   PHE    47     -15.053  39.976  53.435  1.00  0.00              
ATOM     82  CA  PHE    47     -14.921  39.170  54.590  1.00  0.00              
ATOM     83  C   PHE    47     -13.586  39.445  55.299  1.00  0.00              
ATOM     84  O   PHE    47     -12.652  40.014  54.716  1.00  0.00              
ATOM     85  N   GLN    48     -13.532  38.971  56.538  1.00  0.00              
ATOM     86  CA  GLN    48     -12.254  39.181  57.293  1.00  0.00              
ATOM     87  C   GLN    48     -11.481  37.916  56.963  1.00  0.00              
ATOM     88  O   GLN    48     -12.228  36.926  56.865  1.00  0.00              
ATOM     89  N   ALA    49     -10.188  37.894  56.811  1.00  0.00              
ATOM     90  CA  ALA    49      -9.528  36.693  56.429  1.00  0.00              
ATOM     91  C   ALA    49     -10.229  35.386  56.754  1.00  0.00              
ATOM     92  O   ALA    49     -10.466  34.735  55.672  1.00  0.00              
ATOM     93  N   ALA    50     -10.481  34.992  57.984  1.00  0.00              
ATOM     94  CA  ALA    50     -11.090  33.612  58.094  1.00  0.00              
ATOM     95  C   ALA    50     -12.497  33.422  58.651  1.00  0.00              
ATOM     96  O   ALA    50     -13.036  32.332  58.904  1.00  0.00              
ATOM     97  N   VAL    51     -13.119  34.512  58.942  1.00  0.00              
ATOM     98  CA  VAL    51     -14.403  34.827  59.494  1.00  0.00              
ATOM     99  C   VAL    51     -15.443  34.795  58.384  1.00  0.00              
ATOM    100  O   VAL    51     -15.192  34.127  57.371  1.00  0.00              
ATOM    101  N   PRO    52     -16.591  35.391  58.585  1.00  0.00              
ATOM    102  CA  PRO    52     -17.763  35.366  57.737  1.00  0.00              
ATOM    103  C   PRO    52     -18.040  36.555  56.884  1.00  0.00              
ATOM    104  O   PRO    52     -17.384  37.602  57.114  1.00  0.00              
ATOM    105  N   LYS    53     -18.905  36.456  55.906  1.00  0.00              
ATOM    106  CA  LYS    53     -19.021  37.619  54.998  1.00  0.00              
ATOM    107  C   LYS    53     -19.519  38.792  55.730  1.00  0.00              
ATOM    108  O   LYS    53     -20.606  38.666  56.274  1.00  0.00              
ATOM    109  N   THR    54     -18.875  39.895  55.681  1.00  0.00              
ATOM    110  CA  THR    54     -19.369  41.169  56.316  1.00  0.00              
ATOM    111  C   THR    54     -20.369  41.797  55.381  1.00  0.00              
ATOM    112  O   THR    54     -21.534  41.891  55.750  1.00  0.00              
ATOM    113  N   PHE    55     -20.084  42.124  54.166  1.00  0.00              
ATOM    114  CA  PHE    55     -20.868  42.625  53.046  1.00  0.00              
ATOM    115  C   PHE    55     -21.023  41.540  51.983  1.00  0.00              
ATOM    116  O   PHE    55     -19.982  40.916  51.772  1.00  0.00              
ATOM    117  N   GLN    56     -22.128  41.350  51.361  1.00  0.00              
ATOM    118  CA  GLN    56     -22.316  40.355  50.283  1.00  0.00              
ATOM    119  C   GLN    56     -23.362  41.112  49.477  1.00  0.00              
ATOM    120  O   GLN    56     -24.538  41.048  49.729  1.00  0.00              
ATOM    121  N   LEU    57     -22.870  41.916  48.581  1.00  0.00              
ATOM    122  CA  LEU    57     -23.794  42.734  47.731  1.00  0.00              
ATOM    123  C   LEU    57     -23.751  42.107  46.337  1.00  0.00              
ATOM    124  O   LEU    57     -22.753  41.484  45.896  1.00  0.00              
ATOM    125  N   GLN    58     -24.871  42.291  45.692  1.00  0.00              
ATOM    126  CA  GLN    58     -24.977  41.761  44.308  1.00  0.00              
ATOM    127  C   GLN    58     -24.846  42.841  43.230  1.00  0.00              
ATOM    128  O   GLN    58     -25.674  43.141  42.352  1.00  0.00              
END
