REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0046AL212_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : BRYANT 
REMARK  ---------------------------------------------------------- 
TARGET T0046  
REMARK =======================================================================  
AUTHOR 2738-1421-4442  
REMARK This prediction was prepared by Anna Panchenko,  
REMARK Aron Marchler-Bauer, and Steve Bryant, NCBI.   
REMARK =======================================================================  
METHOD Predictions were made with the potential and alignment model used in   
METHOD CASP1 and CASP2 predictions, as described by Madej et al. in Proteins   
METHOD 23:356-369, 1995. Convergence control has been added to the Gibbs-  
METHOD Sampling alignment model. In addition to contact-based threading   
METHOD potentials, PSSMs summarizing sequence conservation in the family   
METHOD represented by the template structure are used to score threading  
METHOD alignments. Threading "cores" summarizing the conserved substructure   
METHOD in the templates used for models below have been based on structure  
METHOD superpositions generated by VAST (Gibrat et al., Curr Opin Struct  
METHOD Biol 1996 Jun;6(3):377-385 ).  
METHOD The alignments have been calculated with the Gibbs Sampling threading  
METHOD engine. Models 1-3 have been calculated with PSSMs and a weight of  
METHOD 0.5. Models 4 and 5 have been calculated using contact-based scoring   
METHOD parameters. The models represent the top scoring hits in database  
METHOD searches with different parameters.  
REMARK =======================================================================  
MODEL  1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 3dpa 
ATOM      1  CA  SER     3      30.631  22.736  12.709  1.00  0.00              
ATOM      2  CA  ILE     4      30.593  23.611  16.365  1.00  0.00              
ATOM      3  CA  THR     5      31.517  27.233  16.779  1.00  0.00              
ATOM      4  CA  ALA     6      32.213  29.260  20.023  1.00  0.00              
ATOM      5  CA  TYR     7      30.654  32.472  21.233  1.00  0.00              
ATOM      6  CA  SER     8      34.013  34.309  21.338  1.00  0.00              
ATOM      7  CA  LEU    12      37.491  34.673  19.916  1.00  0.00              
ATOM      8  CA  LYS    13      39.689  35.015  23.054  1.00  0.00              
ATOM      9  CA  ILE    14      38.636  34.586  26.690  1.00  0.00              
ATOM     10  CA  GLU    15      39.560  36.164  29.988  1.00  0.00              
ATOM     11  CA  PHE    16      39.086  34.030  33.105  1.00  0.00              
ATOM     12  CA  THR    17      38.455  36.367  36.029  1.00  0.00              
ATOM     13  CA  PHE    18      40.336  34.931  38.997  1.00  0.00              
ATOM     14  CA  VAL    27      34.153  29.116  37.173  1.00  0.00              
ATOM     15  CA  THR    28      32.747  30.673  34.094  1.00  0.00              
ATOM     16  CA  VAL    29      31.125  29.198  30.917  1.00  0.00              
ATOM     17  CA  ILE    30      31.588  29.273  27.147  1.00  0.00              
ATOM     18  CA  THR    31      28.612  28.863  24.803  1.00  0.00              
ATOM     19  CA  ILE    32      29.127  26.565  21.775  1.00  0.00              
ATOM     20  CA  GLN    33      26.793  25.610  18.847  1.00  0.00              
ATOM     21  CA  ALA    34      26.424  22.929  16.203  1.00  0.00              
ATOM     22  CA  SER    35      25.676  25.283  13.281  1.00  0.00              
ATOM     23  CA  MET    42      21.752  18.248   9.658  1.00  0.00              
ATOM     24  CA  THR    43      24.834  16.319  11.048  1.00  0.00              
ATOM     25  CA  ASP    44      25.196  15.695  14.859  1.00  0.00              
ATOM     26  CA  PHE    45      28.779  16.313  16.181  1.00  0.00              
ATOM     27  CA  VAL    46      30.783  15.286  19.196  1.00  0.00              
ATOM     28  CA  PHE    47      32.537  18.373  20.684  1.00  0.00              
ATOM     29  CA  GLN    48      35.721  17.839  22.746  1.00  0.00              
ATOM     30  CA  ALA    49      37.069  20.408  25.183  1.00  0.00              
ATOM     31  CA  ALA    50      40.439  20.561  26.807  1.00  0.00              
ATOM     32  CA  VAL    51      42.920  23.042  28.161  1.00  0.00              
ATOM     33  CA  THR    54      44.840  24.430  37.440  1.00  0.00              
ATOM     34  CA  PHE    55      41.911  25.257  35.005  1.00  0.00              
ATOM     35  CA  GLN    56      39.656  22.406  33.822  1.00  0.00              
ATOM     36  CA  LEU    57      36.919  22.360  31.084  1.00  0.00              
ATOM     37  CA  GLN    58      33.806  20.296  31.746  1.00  0.00              
ATOM     38  CA  LEU    59      32.357  18.305  29.875  1.00  0.00              
ATOM     39  CA  PRO    62      35.348  16.757  28.097  1.00  0.00              
ATOM     40  CA  SER    63      32.934  15.433  25.422  1.00  0.00              
ATOM     41  CA  SER    64      29.319  15.940  24.471  1.00  0.00              
ATOM     42  CA  SER    65      27.093  15.291  21.389  1.00  0.00              
ATOM     43  CA  VAL    66      25.554  18.440  19.865  1.00  0.00              
ATOM     44  CA  VAL    67      22.448  17.448  17.779  1.00  0.00              
ATOM     45  CA  PRO    68      22.114  19.504  14.488  1.00  0.00              
ATOM     46  CA  THR    74      21.509  23.174  15.512  1.00  0.00              
ATOM     47  CA  ILE    75      21.820  22.622  19.335  1.00  0.00              
ATOM     48  CA  THR    76      23.493  25.193  21.551  1.00  0.00              
ATOM     49  CA  GLN    77      25.332  24.206  24.779  1.00  0.00              
ATOM     50  CA  VAL    78      28.022  25.206  27.267  1.00  0.00              
ATOM     51  CA  ILE    79      31.480  24.183  28.531  1.00  0.00              
ATOM     52  CA  LYS    80      32.263  25.116  32.133  1.00  0.00              
ATOM     53  CA  VAL    81      35.879  26.299  32.944  1.00  0.00              
ATOM     54  CA  LEU    82      36.613  25.810  36.656  1.00  0.00              
ATOM     55  CA  ASN    83      39.894  26.175  38.581  1.00  0.00              
ATOM     56  CA  LEU    89      48.862  33.533  32.881  1.00  0.00              
ATOM     57  CA  ARG    90      48.103  32.190  29.353  1.00  0.00              
ATOM     58  CA  MET    91      46.293  28.951  28.600  1.00  0.00              
ATOM     59  CA  ARG    92      44.528  27.698  25.438  1.00  0.00              
ATOM     60  CA  ILE    93      40.994  26.411  25.255  1.00  0.00              
ATOM     61  CA  LYS    94      40.557  23.797  22.561  1.00  0.00              
ATOM     62  CA  LEU    95      37.443  22.425  21.061  1.00  0.00              
ATOM     63  CA  THR    96      37.437  19.639  18.381  1.00  0.00              
ATOM     64  CA  TYR    97      34.477  18.344  16.247  1.00  0.00              
ATOM     65  CA  ASN    98      34.245  14.637  15.806  1.00  0.00              
ATOM     66  CA  HIS    99      32.001  13.814  12.844  1.00  0.00              
ATOM     67  CA  SER   102      37.392  16.666   9.048  1.00  0.00              
ATOM     68  CA  ALA   103      37.798  16.991  12.735  1.00  0.00              
ATOM     69  CA  MET   104      37.965  20.754  12.868  1.00  0.00              
ATOM     70  CA  GLN   105      39.694  22.294  15.815  1.00  0.00              
ATOM     71  CA  ASP   106      39.127  25.806  17.300  1.00  0.00              
ATOM     72  CA  LEU   107      41.903  27.006  19.596  1.00  0.00              
ATOM     73  CA  ALA   108      41.401  30.327  21.524  1.00  0.00              
ATOM     74  CA  GLU   109      43.545  32.266  24.012  1.00  0.00              
ATOM     75  CA  VAL   110      42.391  32.136  27.678  1.00  0.00              
ATOM     76  CA  ASN   111      43.954  34.838  29.854  1.00  0.00              
ATOM     77  CA  ASN   112      43.793  33.898  33.419  1.00  0.00              
ATOM     78  CA  PHE   113      43.530  37.268  35.121  1.00  0.00              
ATOM     79  CA  PRO   114      43.964  36.894  38.954  1.00  0.00              
ATOM     80  CA  PRO   115      41.720  38.945  41.143  1.00  0.00              
ATOM     81  CA  GLN   116      44.667  41.217  42.443  1.00  0.00              
ATOM     82  CA  SER   117      45.220  42.745  39.035  1.00  0.00              
ATOM     83  CA  TRP   118      41.476  42.972  38.102  1.00  0.00              
ATOM     84  CA  GLN   119      40.815  45.682  35.530  1.00  0.00              
END
