REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0046AL201_2 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : TATSUYA-AKUTSU 
REMARK  ---------------------------------------------------------- 
TARGET T0046  
AUTHOR 7648-2940-6918  
REMARK 2nd candidate for t0046.  
REMARK   
METHOD We align a target sequence with structurally aligned sequences  
METHOD (i.e., multiple structure alignment), where a multiple structure  
METHOD alignment is computed from results of pairwise structure alignments  
METHOD for similar structures.   
METHOD Pairwise structure alignments are computed using a computer  
METHOD program STRALIGN [1] developed by the group-leader and they are  
METHOD combined into a multiple structure alignment using a method like  
METHOD center-star alignment.  
METHOD A simple dynamic programming procedure (Smith-Waterman like procedure)  
METHOD is used for computing an alignment between a target sequence and  
METHOD the aligned sequences.  
METHOD Finally, an alignment between a target and one of the aligned  
METHOD sequences (i.e., template sequence) is extracted and refined.  
METHOD Human knowledge is also used to find template structures and  
METHOD to refine alignments.  
METHOD  
METHOD [1] T. Akutsu: Protein structure alignment using dynamic programming  
METHOD and iterative alignment, IEICE Transactions on Information and Systems,  
METHOD vol. E79-D, pp. 1629--1636, 1996.  
METHOD  
METHOD Program code of STRALIGN is available via  
METHOD http://www.hgc.ims.u-tokyo.ac.jp/service/tooldoc/stralign/intro.html  
MODEL  2  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1agx 
ATOM      1  N   SER     3      -0.274  21.701  38.724  1.00  0.00              
ATOM      2  CA  SER     3       0.753  22.188  37.798  1.00  0.00              
ATOM      3  C   SER     3       2.159  21.931  38.341  1.00  0.00              
ATOM      4  O   SER     3       3.054  21.510  37.564  1.00  0.00              
ATOM      5  N   ILE     4       2.396  22.196  39.612  1.00  0.00              
ATOM      6  CA  ILE     4       3.727  21.980  40.208  1.00  0.00              
ATOM      7  C   ILE     4       4.201  20.525  39.933  1.00  0.00              
ATOM      8  O   ILE     4       5.274  20.188  39.465  1.00  0.00              
ATOM      9  N   THR     5       3.252  19.687  40.342  1.00  0.00              
ATOM     10  CA  THR     5       3.345  18.223  40.299  1.00  0.00              
ATOM     11  C   THR     5       3.521  17.751  38.878  1.00  0.00              
ATOM     12  O   THR     5       4.365  16.869  38.667  1.00  0.00              
ATOM     13  N   ALA     6       2.795  18.328  37.941  1.00  0.00              
ATOM     14  CA  ALA     6       2.905  18.026  36.514  1.00  0.00              
ATOM     15  C   ALA     6       4.303  18.433  36.028  1.00  0.00              
ATOM     16  O   ALA     6       4.948  17.548  35.424  1.00  0.00              
ATOM     17  N   TYR     7       4.748  19.632  36.277  1.00  0.00              
ATOM     18  CA  TYR     7       6.077  20.178  35.954  1.00  0.00              
ATOM     19  C   TYR     7       7.239  19.447  36.628  1.00  0.00              
ATOM     20  O   TYR     7       8.245  19.211  35.930  1.00  0.00              
ATOM     21  N   SER     8       7.206  19.058  37.897  1.00  0.00              
ATOM     22  CA  SER     8       8.287  18.317  38.563  1.00  0.00              
ATOM     23  C   SER     8       8.489  16.993  37.787  1.00  0.00              
ATOM     24  O   SER     8       9.559  16.502  37.387  1.00  0.00              
ATOM     25  N   LYS     9       7.358  16.319  37.678  1.00  0.00              
ATOM     26  CA  LYS     9       7.190  15.017  37.025  1.00  0.00              
ATOM     27  C   LYS     9       7.604  15.066  35.563  1.00  0.00              
ATOM     28  O   LYS     9       7.841  13.994  34.958  1.00  0.00              
ATOM     29  N   ASN    10       7.714  16.249  34.993  1.00  0.00              
ATOM     30  CA  ASN    10       8.125  16.444  33.596  1.00  0.00              
ATOM     31  C   ASN    10       9.625  16.728  33.535  1.00  0.00              
ATOM     32  O   ASN    10      10.271  16.670  32.481  1.00  0.00              
ATOM     33  N   GLY    11      10.152  17.096  34.703  1.00  0.00              
ATOM     34  CA  GLY    11      11.581  17.336  34.800  1.00  0.00              
ATOM     35  C   GLY    11      12.043  18.750  34.554  1.00  0.00              
ATOM     36  O   GLY    11      13.032  18.998  33.852  1.00  0.00              
ATOM     37  N   LEU    12      11.329  19.662  35.191  1.00  0.00              
ATOM     38  CA  LEU    12      11.752  21.068  35.158  1.00  0.00              
ATOM     39  C   LEU    12      12.601  21.203  36.432  1.00  0.00              
ATOM     40  O   LEU    12      12.431  20.680  37.544  1.00  0.00              
ATOM     41  N   LYS    13      13.626  22.045  36.266  1.00  0.00              
ATOM     42  CA  LYS    13      14.602  22.373  37.308  1.00  0.00              
ATOM     43  C   LYS    13      14.098  23.354  38.346  1.00  0.00              
ATOM     44  O   LYS    13      14.523  23.208  39.511  1.00  0.00              
ATOM     45  N   SER    26      12.494  16.298  45.413  1.00  0.00              
ATOM     46  CA  SER    26      12.755  16.177  43.975  1.00  0.00              
ATOM     47  C   SER    26      13.692  17.272  43.482  1.00  0.00              
ATOM     48  O   SER    26      13.829  17.384  42.245  1.00  0.00              
ATOM     49  N   VAL    27      14.293  18.035  44.366  1.00  0.00              
ATOM     50  CA  VAL    27      15.248  19.101  44.118  1.00  0.00              
ATOM     51  C   VAL    27      14.876  20.301  43.280  1.00  0.00              
ATOM     52  O   VAL    27      15.791  21.009  42.750  1.00  0.00              
ATOM     53  N   THR    28      13.556  20.586  43.173  1.00  0.00              
ATOM     54  CA  THR    28      13.022  21.689  42.382  1.00  0.00              
ATOM     55  C   THR    28      13.530  23.049  42.909  1.00  0.00              
ATOM     56  O   THR    28      13.569  23.093  44.150  1.00  0.00              
ATOM     57  N   VAL    29      13.806  24.051  42.109  1.00  0.00              
ATOM     58  CA  VAL    29      14.208  25.365  42.687  1.00  0.00              
ATOM     59  C   VAL    29      12.902  26.163  42.826  1.00  0.00              
ATOM     60  O   VAL    29      12.021  25.973  41.959  1.00  0.00              
ATOM     61  N   ILE    30      12.793  27.050  43.804  1.00  0.00              
ATOM     62  CA  ILE    30      11.526  27.806  43.901  1.00  0.00              
ATOM     63  C   ILE    30      11.707  29.304  43.946  1.00  0.00              
ATOM     64  O   ILE    30      12.141  29.868  44.951  1.00  0.00              
ATOM     65  N   THR    31      11.328  30.001  42.897  1.00  0.00              
ATOM     66  CA  THR    31      11.416  31.468  42.776  1.00  0.00              
ATOM     67  C   THR    31      10.019  32.034  43.016  1.00  0.00              
ATOM     68  O   THR    31       9.091  31.740  42.267  1.00  0.00              
ATOM     69  N   ILE    32       9.912  32.828  44.024  1.00  0.00              
ATOM     70  CA  ILE    32       8.713  33.541  44.478  1.00  0.00              
ATOM     71  C   ILE    32       8.605  34.929  43.809  1.00  0.00              
ATOM     72  O   ILE    32       9.315  35.912  44.140  1.00  0.00              
ATOM     73  N   GLN    33       7.776  35.015  42.777  1.00  0.00              
ATOM     74  CA  GLN    33       7.576  36.308  42.051  1.00  0.00              
ATOM     75  C   GLN    33       6.125  36.727  42.239  1.00  0.00              
ATOM     76  O   GLN    33       5.423  36.052  43.022  1.00  0.00              
ATOM     77  N   SER    35       5.653  37.756  41.501  1.00  0.00              
ATOM     78  CA  SER    35       4.228  38.063  41.597  1.00  0.00              
ATOM     79  C   SER    35       3.520  38.346  40.267  1.00  0.00              
ATOM     80  O   SER    35       4.082  38.375  39.178  1.00  0.00              
ATOM     81  N   ASN    36       2.243  38.502  40.500  1.00  0.00              
ATOM     82  CA  ASN    36       1.184  38.761  39.527  1.00  0.00              
ATOM     83  C   ASN    36       0.840  40.254  39.513  1.00  0.00              
ATOM     84  O   ASN    36       0.121  40.742  38.593  1.00  0.00              
ATOM     85  N   SER    37       1.426  40.925  40.492  1.00  0.00              
ATOM     86  CA  SER    37       1.389  42.381  40.755  1.00  0.00              
ATOM     87  C   SER    37       2.464  43.041  39.933  1.00  0.00              
ATOM     88  O   SER    37       3.599  42.523  40.107  1.00  0.00              
ATOM     89  N   PHE    45       8.246  45.275  44.369  1.00  0.00              
ATOM     90  CA  PHE    45       9.013  44.027  44.183  1.00  0.00              
ATOM     91  C   PHE    45       8.799  43.150  45.391  1.00  0.00              
ATOM     92  O   PHE    45       8.289  43.571  46.425  1.00  0.00              
ATOM     93  N   VAL    46       9.148  41.930  45.181  1.00  0.00              
ATOM     94  CA  VAL    46       9.056  40.853  46.143  1.00  0.00              
ATOM     95  C   VAL    46      10.351  40.854  46.954  1.00  0.00              
ATOM     96  O   VAL    46      11.514  40.665  46.558  1.00  0.00              
ATOM     97  N   PHE    47      10.145  41.253  48.217  1.00  0.00              
ATOM     98  CA  PHE    47      11.137  41.331  49.264  1.00  0.00              
ATOM     99  C   PHE    47      11.454  39.918  49.739  1.00  0.00              
ATOM    100  O   PHE    47      10.590  39.063  50.089  1.00  0.00              
ATOM    101  N   GLN    48      12.745  39.595  49.807  1.00  0.00              
ATOM    102  CA  GLN    48      13.081  38.238  50.328  1.00  0.00              
ATOM    103  C   GLN    48      12.755  38.191  51.816  1.00  0.00              
ATOM    104  O   GLN    48      12.782  39.207  52.521  1.00  0.00              
ATOM    105  N   ALA    49      12.434  37.042  52.344  1.00  0.00              
ATOM    106  CA  ALA    49      12.116  36.659  53.708  1.00  0.00              
ATOM    107  C   ALA    49      10.801  37.266  54.246  1.00  0.00              
ATOM    108  O   ALA    49      10.434  36.869  55.369  1.00  0.00              
ATOM    109  N   ALA    50      10.192  38.139  53.514  1.00  0.00              
ATOM    110  CA  ALA    50       8.951  38.817  53.821  1.00  0.00              
ATOM    111  C   ALA    50       7.695  38.020  54.127  1.00  0.00              
ATOM    112  O   ALA    50       7.220  37.836  55.262  1.00  0.00              
ATOM    113  N   GLY    73      14.817  27.576  51.602  1.00  0.00              
ATOM    114  CA  GLY    73      15.766  27.427  50.491  1.00  0.00              
ATOM    115  C   GLY    73      15.150  28.023  49.228  1.00  0.00              
ATOM    116  O   GLY    73      15.520  27.496  48.159  1.00  0.00              
ATOM    117  N   THR    74      14.294  29.035  49.309  1.00  0.00              
ATOM    118  CA  THR    74      13.703  29.660  48.084  1.00  0.00              
ATOM    119  C   THR    74      14.388  30.927  47.610  1.00  0.00              
ATOM    120  O   THR    74      15.297  31.396  48.354  1.00  0.00              
ATOM    121  N   ILE    75      13.943  31.538  46.537  1.00  0.00              
ATOM    122  CA  ILE    75      14.509  32.796  46.004  1.00  0.00              
ATOM    123  C   ILE    75      13.479  33.927  45.862  1.00  0.00              
ATOM    124  O   ILE    75      12.359  33.593  45.416  1.00  0.00              
ATOM    125  N   VAL    78      13.780  35.178  46.218  1.00  0.00              
ATOM    126  CA  VAL    78      12.915  36.345  46.070  1.00  0.00              
ATOM    127  C   VAL    78      13.256  36.946  44.686  1.00  0.00              
ATOM    128  O   VAL    78      14.373  37.529  44.526  1.00  0.00              
ATOM    129  N   ILE    79      12.333  36.759  43.713  1.00  0.00              
ATOM    130  CA  ILE    79      12.696  37.369  42.424  1.00  0.00              
ATOM    131  C   ILE    79      12.675  38.860  42.243  1.00  0.00              
ATOM    132  O   ILE    79      12.565  39.363  41.075  1.00  0.00              
ATOM    133  N   LYS    80      12.764  39.612  43.318  1.00  0.00              
ATOM    134  CA  LYS    80      12.823  41.078  43.313  1.00  0.00              
ATOM    135  C   LYS    80      11.770  41.713  42.445  1.00  0.00              
ATOM    136  O   LYS    80      10.587  41.552  42.806  1.00  0.00              
ATOM    137  N   VAL    81      12.071  42.390  41.343  1.00  0.00              
ATOM    138  CA  VAL    81      11.106  43.106  40.498  1.00  0.00              
ATOM    139  C   VAL    81      10.929  42.615  39.071  1.00  0.00              
ATOM    140  O   VAL    81      10.469  43.428  38.211  1.00  0.00              
ATOM    141  N   LEU    82      11.287  41.368  38.827  1.00  0.00              
ATOM    142  CA  LEU    82      11.170  40.713  37.521  1.00  0.00              
ATOM    143  C   LEU    82       9.746  40.149  37.391  1.00  0.00              
ATOM    144  O   LEU    82       9.523  39.364  38.303  1.00  0.00              
ATOM    145  N   ASN    83       9.016  40.406  36.348  1.00  0.00              
ATOM    146  CA  ASN    83       7.668  39.782  36.181  1.00  0.00              
ATOM    147  C   ASN    83       7.914  38.309  35.881  1.00  0.00              
ATOM    148  O   ASN    83       9.031  37.949  35.479  1.00  0.00              
ATOM    149  N   PRO    84       6.902  37.478  36.061  1.00  0.00              
ATOM    150  CA  PRO    84       7.089  36.021  35.892  1.00  0.00              
ATOM    151  C   PRO    84       7.872  35.667  34.660  1.00  0.00              
ATOM    152  O   PRO    84       8.928  35.034  34.775  1.00  0.00              
ATOM    153  N   GLN    85       7.460  36.060  33.472  1.00  0.00              
ATOM    154  CA  GLN    85       8.145  35.739  32.215  1.00  0.00              
ATOM    155  C   GLN    85       9.660  35.985  32.366  1.00  0.00              
ATOM    156  O   GLN    85      10.457  35.114  31.963  1.00  0.00              
ATOM    157  N   LYS    86      10.033  37.176  32.775  1.00  0.00              
ATOM    158  CA  LYS    86      11.384  37.580  32.903  1.00  0.00              
ATOM    159  C   LYS    86      12.171  36.824  33.953  1.00  0.00              
ATOM    160  O   LYS    86      13.346  36.522  33.703  1.00  0.00              
ATOM    161  N   GLN    87      11.545  36.584  35.083  1.00  0.00              
ATOM    162  CA  GLN    87      12.166  35.794  36.156  1.00  0.00              
ATOM    163  C   GLN    87      12.491  34.415  35.528  1.00  0.00              
ATOM    164  O   GLN    87      13.604  33.998  35.808  1.00  0.00              
ATOM    165  N   GLN    88      11.616  33.818  34.781  1.00  0.00              
ATOM    166  CA  GLN    88      11.630  32.583  34.052  1.00  0.00              
ATOM    167  C   GLN    88      12.975  32.514  33.303  1.00  0.00              
ATOM    168  O   GLN    88      13.695  31.512  33.510  1.00  0.00              
ATOM    169  N   LEU    89      13.251  33.553  32.525  1.00  0.00              
ATOM    170  CA  LEU    89      14.510  33.587  31.786  1.00  0.00              
ATOM    171  C   LEU    89      15.746  33.719  32.637  1.00  0.00              
ATOM    172  O   LEU    89      16.806  33.133  32.296  1.00  0.00              
ATOM    173  N   ARG    90      15.713  34.472  33.736  1.00  0.00              
ATOM    174  CA  ARG    90      16.950  34.622  34.546  1.00  0.00              
ATOM    175  C   ARG    90      17.307  33.256  35.140  1.00  0.00              
ATOM    176  O   ARG    90      18.480  32.840  35.069  1.00  0.00              
ATOM    177  N   MET    91      16.317  32.594  35.691  1.00  0.00              
ATOM    178  CA  MET    91      16.446  31.271  36.327  1.00  0.00              
ATOM    179  C   MET    91      16.965  30.286  35.292  1.00  0.00              
ATOM    180  O   MET    91      17.920  29.605  35.703  1.00  0.00              
ATOM    181  N   ARG    92      16.401  30.217  34.093  1.00  0.00              
ATOM    182  CA  ARG    92      16.882  29.275  33.058  1.00  0.00              
ATOM    183  C   ARG    92      18.369  29.538  32.843  1.00  0.00              
ATOM    184  O   ARG    92      19.097  28.570  32.779  1.00  0.00              
ATOM    185  N   ILE    93      18.784  30.785  32.696  1.00  0.00              
ATOM    186  CA  ILE    93      20.184  31.196  32.513  1.00  0.00              
ATOM    187  C   ILE    93      20.997  30.946  33.810  1.00  0.00              
ATOM    188  O   ILE    93      22.180  30.518  33.736  1.00  0.00              
ATOM    189  N   LYS    94      20.424  31.155  34.999  1.00  0.00              
ATOM    190  CA  LYS    94      21.010  30.953  36.323  1.00  0.00              
ATOM    191  C   LYS    94      21.476  29.501  36.503  1.00  0.00              
ATOM    192  O   LYS    94      22.629  29.263  36.919  1.00  0.00              
ATOM    193  N   LEU    95      20.563  28.563  36.260  1.00  0.00              
ATOM    194  CA  LEU    95      20.830  27.150  36.399  1.00  0.00              
ATOM    195  C   LEU    95      21.740  26.681  35.272  1.00  0.00              
ATOM    196  O   LEU    95      21.775  25.459  35.056  1.00  0.00              
ATOM    197  N   THR    96      22.421  27.532  34.517  1.00  0.00              
ATOM    198  CA  THR    96      23.400  27.077  33.503  1.00  0.00              
ATOM    199  C   THR    96      24.759  27.222  34.215  1.00  0.00              
ATOM    200  O   THR    96      25.792  26.675  33.898  1.00  0.00              
ATOM    201  N   TYR    97      24.752  28.045  35.266  1.00  0.00              
ATOM    202  CA  TYR    97      25.975  28.329  36.022  1.00  0.00              
ATOM    203  C   TYR    97      26.013  27.833  37.470  1.00  0.00              
ATOM    204  O   TYR    97      27.154  27.570  37.939  1.00  0.00              
ATOM    205  N   ASN    98      24.932  27.758  38.212  1.00  0.00              
ATOM    206  CA  ASN    98      24.838  27.303  39.593  1.00  0.00              
ATOM    207  C   ASN    98      23.483  26.628  39.923  1.00  0.00              
ATOM    208  O   ASN    98      22.471  26.721  39.236  1.00  0.00              
ATOM    209  N   HIS    99      23.515  26.000  41.092  1.00  0.00              
ATOM    210  CA  HIS    99      22.351  25.289  41.662  1.00  0.00              
ATOM    211  C   HIS    99      22.156  25.840  43.085  1.00  0.00              
ATOM    212  O   HIS    99      21.273  25.489  43.856  1.00  0.00              
ATOM    213  N   LYS   100      23.089  26.690  43.407  1.00  0.00              
ATOM    214  CA  LYS   100      23.234  27.393  44.653  1.00  0.00              
ATOM    215  C   LYS   100      22.249  28.579  44.778  1.00  0.00              
ATOM    216  O   LYS   100      22.440  29.663  44.184  1.00  0.00              
ATOM    217  N   GLY   101      21.195  28.445  45.528  1.00  0.00              
ATOM    218  CA  GLY   101      20.095  29.321  45.822  1.00  0.00              
ATOM    219  C   GLY   101      20.454  30.726  46.255  1.00  0.00              
ATOM    220  O   GLY   101      19.680  31.662  45.924  1.00  0.00              
ATOM    221  N   SER   102      21.559  30.941  46.938  1.00  0.00              
ATOM    222  CA  SER   102      22.055  32.257  47.370  1.00  0.00              
ATOM    223  C   SER   102      22.776  32.970  46.224  1.00  0.00              
ATOM    224  O   SER   102      22.680  34.204  46.138  1.00  0.00              
ATOM    225  N   ALA   103      23.553  32.286  45.404  1.00  0.00              
ATOM    226  CA  ALA   103      24.280  32.930  44.325  1.00  0.00              
ATOM    227  C   ALA   103      23.291  33.390  43.257  1.00  0.00              
ATOM    228  O   ALA   103      23.528  34.412  42.608  1.00  0.00              
ATOM    229  N   MET   104      22.194  32.655  43.132  1.00  0.00              
ATOM    230  CA  MET   104      21.111  32.977  42.173  1.00  0.00              
ATOM    231  C   MET   104      20.271  34.146  42.693  1.00  0.00              
ATOM    232  O   MET   104      19.921  35.084  41.964  1.00  0.00              
ATOM    233  N   GLN   105      19.982  34.070  43.972  1.00  0.00              
ATOM    234  CA  GLN   105      19.274  35.116  44.710  1.00  0.00              
ATOM    235  C   GLN   105      20.093  36.372  44.433  1.00  0.00              
ATOM    236  O   GLN   105      19.608  37.444  44.111  1.00  0.00              
ATOM    237  N   ASP   106      21.404  36.130  44.415  1.00  0.00              
ATOM    238  CA  ASP   106      22.316  37.267  44.131  1.00  0.00              
ATOM    239  C   ASP   106      22.109  37.818  42.740  1.00  0.00              
ATOM    240  O   ASP   106      22.243  39.053  42.630  1.00  0.00              
ATOM    241  N   LEU   107      21.769  37.111  41.708  1.00  0.00              
ATOM    242  CA  LEU   107      21.584  37.637  40.352  1.00  0.00              
ATOM    243  C   LEU   107      20.252  38.363  40.246  1.00  0.00              
ATOM    244  O   LEU   107      20.146  39.309  39.435  1.00  0.00              
END
