PFRMAT SS 
TARGET T0044 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded3-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t44.remote_4.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 12.9925 
METHOD 
MODEL 1 
M C 0.85 
V C 0.82 
K C 0.86 
R C 0.63 
M E 0.78 
I E 0.92 
A E 0.94 
L E 0.86 
D E 0.57 
G C 0.63 
A C 0.64 
Q C 0.48 
G H 0.43 
E C 0.43 
G C 0.77 
G C 0.84 
G C 0.60 
Q H 0.55 
I H 0.59 
L H 0.73 
R H 0.78 
S H 0.79 
A H 0.82 
L H 0.90 
S H 0.92 
L H 0.92 
S H 0.91 
M H 0.87 
I H 0.69 
T C 0.57 
G C 0.86 
Q C 0.93 
P C 0.82 
F E 0.61 
T E 0.89 
I E 0.95 
T E 0.94 
S E 0.93 
I E 0.89 
R E 0.79 
A E 0.49 
G C 0.83 
R C 0.88 
A C 0.90 
K C 0.94 
P C 0.95 
G C 0.86 
L C 0.61 
L C 0.51 
R C 0.60 
Q C 0.59 
H H 0.54 
L H 0.75 
T H 0.85 
A H 0.95 
V H 0.98 
K H 0.99 
A H 0.98 
A H 0.99 
T H 0.98 
E H 0.96 
I H 0.82 
C C 0.65 
G C 0.81 
A C 0.75 
T C 0.54 
V E 0.61 
E E 0.68 
G E 0.59 
A C 0.49 
E E 0.50 
L E 0.49 
G C 0.57 
S C 0.53 
Q E 0.72 
R E 0.87 
L E 0.91 
L E 0.88 
F E 0.64 
R C 0.80 
P C 0.89 
G C 0.84 
T C 0.65 
V C 0.55 
R C 0.61 
G C 0.83 
G C 0.88 
D C 0.69 
Y E 0.52 
R E 0.60 
F E 0.57 
A E 0.49 
I C 0.60 
G C 0.83 
S C 0.71 
A C 0.63 
G C 0.64 
S C 0.51 
C H 0.65 
T H 0.76 
L H 0.82 
V H 0.82 
L H 0.88 
Q H 0.82 
T H 0.76 
V H 0.75 
L H 0.69 
P H 0.56 
A H 0.53 
L H 0.49 
W H 0.43 
F C 0.39 
A C 0.58 
D C 0.83 
G C 0.91 
P C 0.91 
S C 0.57 
R E 0.87 
V E 0.95 
E E 0.97 
V E 0.92 
S E 0.67 
G E 0.50 
G C 0.55 
T C 0.57 
D C 0.63 
N C 0.77 
P C 0.86 
S C 0.82 
A C 0.89 
P C 0.94 
P C 0.79 
A C 0.44 
D H 0.57 
F H 0.65 
I H 0.78 
R H 0.84 
R H 0.83 
V H 0.74 
L H 0.87 
E H 0.89 
P H 0.87 
L H 0.90 
L H 0.92 
A H 0.85 
K H 0.69 
I C 0.64 
G C 0.88 
I C 0.72 
H C 0.60 
Q C 0.46 
Q E 0.58 
T E 0.71 
T E 0.81 
L E 0.80 
L E 0.75 
R E 0.63 
H C 0.51 
G C 0.69 
F C 0.79 
Y C 0.86 
P C 0.75 
A C 0.64 
G C 0.92 
G C 0.97 
G C 0.91 
V E 0.67 
V E 0.93 
A E 0.96 
T E 0.96 
E E 0.94 
V E 0.75 
S C 0.69 
P C 0.65 
V C 0.48 
A C 0.50 
S C 0.54 
F C 0.69 
N C 0.86 
T C 0.71 
L C 0.55 
Q C 0.44 
L C 0.38 
G C 0.45 
E C 0.50 
R C 0.66 
G C 0.78 
N C 0.54 
I E 0.65 
V E 0.78 
Q E 0.89 
M E 0.86 
R E 0.76 
G E 0.69 
E E 0.69 
V E 0.71 
L E 0.63 
L E 0.52 
A C 0.54 
G C 0.71 
V C 0.81 
P C 0.62 
R H 0.87 
H H 0.96 
V H 0.96 
A H 0.98 
E H 0.99 
R H 1.00 
E H 0.99 
I H 0.99 
A H 1.00 
T H 0.99 
L H 0.99 
A H 0.98 
G H 0.96 
S H 0.92 
F H 0.76 
S C 0.50 
L C 0.70 
H C 0.75 
E C 0.66 
Q C 0.61 
N C 0.52 
I C 0.42 
H C 0.45 
N C 0.53 
L C 0.62 
P C 0.72 
R C 0.84 
D C 0.89 
Q C 0.91 
G C 0.95 
P C 0.88 
G C 0.82 
N C 0.56 
T E 0.84 
V E 0.96 
S E 0.98 
L E 0.98 
E E 0.95 
V E 0.84 
E E 0.51 
S C 0.76 
E C 0.91 
N C 0.90 
I C 0.58 
T E 0.64 
E E 0.69 
R E 0.66 
F E 0.52 
F E 0.43 
V C 0.44 
V C 0.56 
G C 0.68 
E C 0.68 
K C 0.78 
R C 0.84 
V C 0.82 
S C 0.67 
A H 0.77 
E H 0.92 
V H 0.97 
V H 0.92 
A H 0.98 
A H 0.99 
Q H 1.00 
L H 0.99 
V H 0.99 
K H 1.00 
E H 1.00 
V H 0.99 
K H 0.99 
R H 0.98 
Y H 0.95 
L H 0.83 
A C 0.55 
S C 0.75 
T C 0.88 
A C 0.81 
A C 0.67 
V C 0.62 
G H 0.48 
E H 0.74 
Y H 0.73 
L H 0.78 
A H 0.82 
D H 0.88 
Q H 0.91 
L H 0.93 
V H 0.92 
L H 0.91 
P H 0.88 
M H 0.81 
A H 0.75 
L H 0.58 
A C 0.71 
G C 0.84 
A C 0.89 
G C 0.84 
E C 0.61 
F E 0.56 
T E 0.69 
V E 0.68 
A E 0.57 
H E 0.48 
P C 0.49 
S C 0.43 
C H 0.46 
H C 0.47 
L H 0.43 
L H 0.47 
T C 0.44 
N H 0.46 
I H 0.58 
A H 0.65 
V H 0.60 
V H 0.79 
E H 0.83 
R H 0.79 
F H 0.61 
L C 0.50 
P C 0.70 
V C 0.47 
R E 0.70 
F E 0.76 
S E 0.77 
L E 0.72 
I E 0.56 
E C 0.57 
T C 0.67 
D C 0.72 
G C 0.78 
V C 0.75 
T C 0.75 
R C 0.66 
V C 0.58 
S C 0.57 
I C 0.47 
E H 0.49 
G C 0.45 
S C 0.47 
H C 0.44 
H C 0.46 
H C 0.57 
H C 0.68 
H C 0.80 
H C 0.89 
END 
