

PFRMAT ABF1
TARGET T0037
AUTHOR 6792-8330-8583 D.Gerloff & F.Cohen, UCSF, gerloff@cgl.ucsf.edu
AUTHOR           and  Marcin Joachimiak, UCSF (graduate student Cohen lab)
AUTHOR 9774-5781-2699 S.Benner, UF and ETH, benner@chem.ethz.ch
REMARK (This prediction results from collaboration between the two groups Benner&Cohen.)
REMARK Secondary structure was predicted according to Benner & Gerloff REMARK Probabilities for the three-state secondary structure prediction reflect
REMARK (a) center or ending positions in a predicted sec.str. element,
REMARK (b) possible sec.str. alternatives
REMARK Due to revision of the models shortly before the deadline,
REMARK this secondary structure is predicted first,
REMARK followed by a supersecondary structure suggestion in a few minutes
REMARK (no computer modeling, only an educated packing guess again!)
BEGDAT 1.1  1  1.00
SS 109
K C  0.80
S C  0.80
A C  0.80
K C  0.60
D H  0.80
A H  1.00
L H  1.00
L H  1.00
L H  1.00
W H  1.00
C H  1.00
Q H  1.00
M H  1.00
K H  1.00
T H  0.80
A H  0.80
G C  0.80
Y C  0.80
P C  1.00
N C  0.80
V C  0.50
N H  0.50
I H  0.80
H H  0.80
N H  1.00
F H  1.00
T H  1.00
T H  1.00
S H  1.00
W H  1.00
R H  0.80
D C  0.80
G C  0.80
M H  0.80
A H  0.80
F H  0.80
N H  0.80
A H  0.80
L H  0.80
I H  0.80
H H  0.80
K C  0.50
H C  0.50
R C  0.80
P C  1.00
D C  1.00
L C  0.50
I C  0.50
D C  0.50
F C  0.50
D C  0.50
K C  0.50
L C  0.50
K C  0.50
K C  0.50
S C  0.80
N C  0.80
A H  0.70
H H  0.70
Y H  0.70
N H  0.90
L H  0.90
Q H  1.00
N H  1.00
A H  1.00
F H  1.00
N H  1.00
L H  1.00
A H  1.00
E H  1.00
Q H  1.00
H H  1.00
L H  0.70
G H  0.70
L C  0.80
T C  0.80
K C  0.50
L E  0.60
L E  0.60
D C  1.00
P C  1.00
E C  0.80
D C  0.80
I E  0.50
S E  0.60
V E  0.60
D C  0.50
H C  0.80
P C  1.00
D C  1.00
E C  0.80
K H  0.80
S H  0.80
I H  0.80
I H  0.80
T H  0.80
Y H  0.80
V H  0.80
V H  0.80
T H  0.80
Y H  0.60
Y H  0.50
H H  0.50
Y H  0.50
F H  0.50
S H  0.50
K H  0.50
M C  0.80
K C  0.80
ENDDAT 1.1
END
