

PFRMAT ABF1
TARGET T0021
AUTHOR 4926-8342-4702 D.J. Osguthorpe, University of Bath, djosg@mgu.bath.ac.uk
REMARK     t0021; KorB C-terminal domain from E.coli; 64 a.a.
REMARK Ab initio folding using simplified geometry model with specifically
REMARK parameterised flexible internals and other potentials.
REMARK Molecular dynamics with cooling used as search technique.
REMARK Methods currently working to around 100 atoms
REMARK Method development specifically excluded small proteins with
REMARK disulphide bridges because of foldability problems of such proteins.
REMARK All model atoms have been submitted - however only CA atoms and
REMARK some CB atoms and SG atoms will correspond directly to standard
REMARK PDB atoms - rest of atoms correspond to centres of coordinates of
REMARK groups of PDB atoms e.g. OG corresponds to centre of CG, OD1, OD2
REMARK for ASP.
REMARK Atoms corresponding directly to PDB atoms are labelled 1.0 in
REMARK occupancy field, 0.0 for those not corresponding directly to PDB atoms
REMARK Expected CA RMS from correct fold is 4-6 angstroms
REMARK (i.e. simulations of known structures fluctuate at this level from
REMARK       the X-ray structure)
REMARK I have observed mis-folds with similar CA RMS values - RMS does not
REMARK discriminate between folds at this level - need to use your eyes!!
BEGDAT 3.1    3  .20
REMARK   check of folding parameters                                        28.6
REMARK  DATE:                                                                   
ATOM      1  CA  GLYN    1       2.991 -30.626  33.217   .00  1.00
ATOM      2  CA  ALA     2       6.512 -29.509  32.010   .00  1.00
ATOM      3  CB  ALA     2       6.673 -30.088  30.648   .00  1.00
ATOM      4  CA  LYS     3       5.588 -25.794  31.992   .00  1.00
ATOM      5  CB  LYS     3       4.538 -25.315  30.984   .00  1.00
ATOM      6  CG  LYS     3       4.530 -24.704  28.489   .00   .00
ATOM      7  ND  LYS     3       3.551 -23.902  26.352   .00   .00
ATOM      8  CA  GLU     4       3.916 -25.615  35.383   .00  1.00
ATOM      9  CB  GLU     4       2.120 -25.984  35.853   .00   .00
ATOM     10  OG  GLU     4       -.192 -24.923  35.250   .00   .00
ATOM     11  CA  PRO     5       6.928 -27.382  36.868   .00  1.00
ATOM     12  CB  PRO     5       7.122 -28.761  36.447   .00   .00
ATOM     13  CA  ASP     6       9.343 -24.743  35.529   .00  1.00
ATOM     14  CB  ASP     6       9.689 -24.562  34.020   .00  1.00
ATOM     15  OG  ASP     6      11.093 -25.802  33.350   .00   .00
ATOM     16  CA  PRO     7       7.105 -21.910  36.637   .00  1.00
ATOM     17  CB  PRO     7       5.862 -21.636  35.967   .00   .00
ATOM     18  CA  ASP     8       6.933 -23.311  40.107   .00  1.00
ATOM     19  CB  ASP     8       6.025 -24.529  40.412   .00  1.00
ATOM     20  OG  ASP     8       4.122 -24.192  40.363   .00   .00
ATOM     21  CA  LYS     9      10.716 -23.785  40.446   .00  1.00
ATOM     22  CB  LYS     9      11.389 -24.798  39.555   .00  1.00
ATOM     23  CG  LYS     9      11.456 -27.306  39.336   .00   .00
ATOM     24  ND  LYS     9      12.059 -29.309  37.933   .00   .00
ATOM     25  CA  LEU    10      11.218 -20.081  39.367   .00  1.00
ATOM     26  CB  LEU    10      11.160 -19.791  37.869   .00  1.00
ATOM     27  CG  LEU    10      12.580 -20.422  36.863   .00   .00
ATOM     28  CA  LYS    11       8.612 -18.633  41.775   .00  1.00
ATOM     29  CB  LYS    11       7.220 -19.207  41.537   .00  1.00
ATOM     30  CG  LYS    11       5.312 -18.414  40.130   .00   .00
ATOM     31  ND  LYS    11       2.976 -18.397  39.236   .00   .00
ATOM     32  CA  LYS    12      10.183 -20.268  44.771   .00  1.00
ATOM     33  CB  LYS    12      10.190 -21.791  44.802   .00  1.00
ATOM     34  CG  LYS    12       8.412 -23.627  45.261   .00   .00
ATOM     35  ND  LYS    12       7.183 -25.788  44.942   .00   .00
ATOM     36  CA  ALA    13      13.561 -18.722  44.007   .00  1.00
ATOM     37  CB  ALA    13      14.260 -19.044  42.652   .00  1.00
ATOM     38  CA  ILE    14      12.102 -15.260  43.398   .00  1.00
ATOM     39  CB  ILE    14      11.188 -14.882  41.399   .00   .00
ATOM     40  CA  VAL    15       9.931 -15.272  46.498   .00  1.00
ATOM     41  CB  VAL    15       8.567 -16.596  46.456   .00   .00
ATOM     42  CA  GLN    16      12.804 -16.223  48.770   .00  1.00
ATOM     43  CB  GLN    16      13.575 -17.819  48.697   .00   .00
ATOM     44  CG  GLN    16      12.940 -20.401  49.362   .00   .00
ATOM     45  CA  VAL    17      15.149 -13.603  47.338   .00  1.00
ATOM     46  CB  VAL    17      15.707 -13.617  45.532   .00   .00
ATOM     47  CA  GLU    18      12.526 -10.869  47.617   .00  1.00
ATOM     48  CB  GLU    18      11.272 -10.886  46.214   .00   .00
ATOM     49  OG  GLU    18      10.751  -9.886  43.820   .00   .00
ATOM     50  CA  HIS    19      11.372 -11.794  51.134   .00  1.00
ATOM     51  CB  HIS    19      10.266 -12.792  51.397   .00  1.00
ATOM     52  CG  HIS    19       8.083 -11.978  50.127   .00   .00
ATOM     53  CA  ASP    20      14.713 -11.960  52.888   .00  1.00
ATOM     54  CB  ASP    20      15.790 -12.980  52.407   .00  1.00
ATOM     55  OG  ASP    20      15.459 -14.776  53.070   .00   .00
ATOM     56  CA  GLU    21      15.466  -8.445  51.637   .00  1.00
ATOM     57  CB  GLU    21      15.614  -6.945  52.731   .00   .00
ATOM     58  OG  GLU    21      13.967  -5.397  54.181   .00   .00
ATOM     59  CA  ARG    22      17.953  -8.370  48.758   .00  1.00
ATOM     60  CB  ARG    22      19.048  -9.426  48.601   .00  1.00
ATOM     61  CG  ARG    22      20.973 -10.220  50.084   .00   .00
ATOM     62  ND  ARG    22      20.919 -11.672  51.996   .00   .00
ATOM     63  CA  PRO    23      16.347  -6.790  45.690   .00  1.00
ATOM     64  CB  PRO    23      16.472  -5.405  45.459   .00   .00
ATOM     65  CA  ALA    24      16.108  -8.649  42.467   .00  1.00
ATOM     66  CB  ALA    24      15.038  -9.736  42.238   .00  1.00
ATOM     67  CA  ARG    25      16.967  -6.898  39.283   .00  1.00
ATOM     68  CB  ARG    25      18.159  -5.930  39.130   .00  1.00
ATOM     69  CG  ARG    25      18.606  -3.406  39.653   .00   .00
ATOM     70  ND  ARG    25      18.639  -1.125  39.188   .00   .00
ATOM     71  CA  LEU    26      17.787 -10.126  37.392   .00  1.00
ATOM     72  CB  LEU    26      19.002 -10.944  37.861   .00  1.00
ATOM     73  CG  LEU    26      20.643 -10.183  37.412   .00   .00
ATOM     74  CA  ILE    27      14.488 -11.820  38.323   .00  1.00
ATOM     75  CB  ILE    27      12.435 -10.887  38.562   .00   .00
ATOM     76  CA  LEU    28      14.131 -15.408  37.014   .00  1.00
ATOM     77  CB  LEU    28      14.157 -16.530  38.071   .00  1.00
ATOM     78  CG  LEU    28      15.847 -17.015  38.768   .00   .00
ATOM     79  CA  ASN    29      10.705 -14.604  35.623   .00  1.00
ATOM     80  CB  ASN    29       9.551 -15.090  36.481   .00  1.00
ATOM     81  CG  ASN    29       7.985 -15.536  35.386   .00   .00
ATOM     82  CA  ARG    30      10.618 -11.073  34.188   .00  1.00
ATOM     83  CB  ARG    30      10.653 -10.873  32.639   .00  1.00
ATOM     84  CG  ARG    30      11.960 -11.228  30.455   .00   .00
ATOM     85  ND  ARG    30      11.558 -11.652  28.142   .00   .00
ATOM     86  CA  ARG    31       8.505  -8.179  35.561   .00  1.00
ATOM     87  CB  ARG    31       8.701  -7.572  36.966   .00  1.00
ATOM     88  CG  ARG    31       8.356  -8.872  39.119   .00   .00
ATOM     89  ND  ARG    31       7.516  -7.969  41.033   .00   .00
ATOM     90  CA  PRO    32       9.135  -5.782  32.667   .00  1.00
ATOM     91  CB  PRO    32       8.143  -5.027  32.088   .00   .00
ATOM     92  CA  PRO    33      11.028  -3.297  34.788   .00  1.00
ATOM     93  CB  PRO    33      10.319  -2.654  35.833   .00   .00
ATOM     94  CA  ALA    34      13.160  -6.057  36.385   .00  1.00
ATOM     95  CB  ALA    34      12.777  -6.568  37.763   .00  1.00
ATOM     96  CA  GLU    35      14.744  -8.518  33.921   .00  1.00
ATOM     97  CB  GLU    35      16.415  -7.885  33.197   .00   .00
ATOM     98  OG  GLU    35      17.279  -6.058  31.521   .00   .00
ATOM     99  CA  GLY    36      14.624 -12.296  33.900   .00  1.00
ATOM    100  CA  TYR    37      17.733 -14.508  34.059   .00  1.00
ATOM    101  CB  TYR    37      19.065 -13.948  34.606   .00  1.00
ATOM    102  CG  TYR    37      19.723 -12.285  33.711   .00   .00
ATOM    103  CD  TYR    37      20.520 -10.228  32.530   .00   .00
ATOM    104  CA  ALA    38      17.397 -18.232  34.470   .00  1.00
ATOM    105  CB  ALA    38      16.778 -18.988  33.278   .00  1.00
ATOM    106  CA  TRP    39      19.410 -20.422  36.785   .00  1.00
ATOM    107  CB  TRP    39      19.929 -19.734  38.050   .00  1.00
ATOM    108  CG  TRP    39      21.466 -21.233  39.676   .00   .00
ATOM    109  CD  TRP    39      20.275 -22.385  40.986   .00   .00
ATOM    110  CA  LEU    40      17.918 -23.789  37.705   .00  1.00
ATOM    111  CB  LEU    40      16.378 -23.847  37.888   .00  1.00
ATOM    112  CG  LEU    40      15.575 -22.757  39.213   .00   .00
ATOM    113  CA  LYS    41      19.477 -27.037  36.509   .00  1.00
ATOM    114  CB  LYS    41      18.634 -28.285  36.240   .00  1.00
ATOM    115  CG  LYS    41      17.751 -30.412  37.338   .00   .00
ATOM    116  ND  LYS    41      17.169 -32.751  37.452   .00   .00
ATOM    117  CA  TYR    42      20.410 -25.363  33.189   .00  1.00
ATOM    118  CB  TYR    42      19.941 -23.915  32.954   .00  1.00
ATOM    119  CG  TYR    42      17.975 -23.666  33.178   .00   .00
ATOM    120  CD  TYR    42      15.543 -23.485  33.439   .00   .00
ATOM    121  CA  GLU    43      24.033 -26.165  32.377   .00  1.00
ATOM    122  CB  GLU    43      24.684 -27.878  32.499   .00   .00
ATOM    123  OG  GLU    43      26.895 -29.412  32.982   .00   .00
ATOM    124  CA  ASP    44      25.846 -24.261  29.674   .00  1.00
ATOM    125  CB  ASP    44      26.056 -24.932  28.323   .00  1.00
ATOM    126  OG  ASP    44      27.587 -26.152  28.193   .00   .00
ATOM    127  CA  ASP    45      23.638 -21.176  30.112   .00  1.00
ATOM    128  CB  ASP    45      22.284 -21.144  29.419   .00  1.00
ATOM    129  OG  ASP    45      22.446 -20.948  27.476   .00   .00
ATOM    130  CA  GLY    46      23.540 -21.500  33.861   .00  1.00
ATOM    131  CA  GLN    47      27.186 -20.499  34.282   .00  1.00
ATOM    132  CB  GLN    47      28.400 -21.374  33.276   .00   .00
ATOM    133  CG  GLN    47      30.116 -23.609  33.236   .00   .00
ATOM    134  CA  GLU    48      26.562 -17.335  32.220   .00  1.00
ATOM    135  CB  GLU    48      25.981 -17.406  30.529   .00   .00
ATOM    136  OG  GLU    48      28.497 -17.311  29.696   .00   .00
ATOM    137  CA  PHE    49      23.503 -16.512  34.309   .00  1.00
ATOM    138  CB  PHE    49      22.117 -17.086  34.001   .00  1.00
ATOM    139  CG  PHE    49      21.479 -16.705  32.185   .00   .00
ATOM    140  CD  PHE    49      20.848 -16.285  30.538   .00   .00
ATOM    141  CA  GLU    50      24.934 -17.514  37.660   .00  1.00
ATOM    142  CB  GLU    50      25.497 -19.170  38.055   .00   .00
ATOM    143  OG  GLU    50      25.742 -20.975  40.091   .00   .00
ATOM    144  CA  ALA    51      27.615 -14.832  37.129   .00  1.00
ATOM    145  CB  ALA    51      28.316 -14.868  35.766   .00  1.00
ATOM    146  CA  ASN    52      24.946 -12.154  36.589   .00  1.00
ATOM    147  CB  ASN    52      24.117 -12.079  35.334   .00  1.00
ATOM    148  CG  ASN    52      25.163 -11.668  33.731   .00   .00
ATOM    149  CA  LEU    53      23.004 -13.252  39.655   .00  1.00
ATOM    150  CB  LEU    53      22.560 -14.727  39.572   .00  1.00
ATOM    151  CG  LEU    53      20.904 -15.077  38.700   .00   .00
ATOM    152  CA  ALA    54      26.085 -13.107  41.758   .00  1.00
ATOM    153  CB  ALA    54      27.121 -14.158  41.453   .00  1.00
ATOM    154  CA  ASP    55      26.938  -9.601  40.464   .00  1.00
ATOM    155  CB  ASP    55      27.069  -9.381  38.946   .00  1.00
ATOM    156  OG  ASP    55      28.671 -10.184  38.148   .00   .00
ATOM    157  CA  VAL    56      23.744  -8.036  41.812   .00  1.00
ATOM    158  CB  VAL    56      22.198  -8.030  40.639   .00   .00
ATOM    159  CA  LYS    57      23.296 -10.407  44.756   .00  1.00
ATOM    160  CB  LYS    57      23.609  -9.945  46.188   .00  1.00
ATOM    161  CG  LYS    57      25.687  -9.461  47.636   .00   .00
ATOM    162  ND  LYS    57      27.847  -9.943  48.929   .00   .00
ATOM    163  CA  LEU    58      20.358 -12.808  44.534   .00  1.00
ATOM    164  CB  LEU    58      19.789 -13.329  43.196   .00  1.00
ATOM    165  CG  LEU    58      18.763 -12.062  42.270   .00   .00
ATOM    166  CA  VAL    59      19.913 -15.038  47.574   .00  1.00
ATOM    167  CB  VAL    59      18.936 -14.441  49.079   .00   .00
ATOM    168  CA  ALA    60      19.731 -18.760  46.983   .00  1.00
ATOM    169  CB  ALA    60      18.326 -19.402  46.809   .00  1.00
ATOM    170  CA  LEU    61      21.320 -18.357  43.532   .00  1.00
ATOM    171  CB  LEU    61      20.681 -17.317  42.662   .00  1.00
ATOM    172  CG  LEU    61      18.987 -17.688  41.942   .00   .00
ATOM    173  CA  ILE    62      24.530 -16.781  44.880   .00  1.00
ATOM    174  CB  ILE    62      24.397 -14.560  45.716   .00   .00
ATOM    175  CA  GLU    63      27.687 -18.549  46.005   .00  1.00
ATOM    176  CB  GLU    63      28.384 -19.967  45.067   .00   .00
ATOM    177  OG  GLU    63      27.402 -22.213  46.352   .00   .00
ATOM    178  CA  GLYC   64      30.591 -16.452  47.284   .00  1.00
TER              GLYC   64
ENDDAT 3.1
END
